Wall clock time and date at job start Wed Apr 1 2020 03:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.49546 * 2 1 4 4 C 1.53187 * 109.49799 * 120.10119 * 2 1 3 5 5 N 1.46931 * 108.77309 * 174.58667 * 4 2 1 6 6 C 1.34772 * 120.62926 * 126.41675 * 5 4 2 7 7 O 1.21280 * 120.00243 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99949 * 180.02562 * 6 5 4 9 9 C 1.50700 * 109.47273 * 179.97438 * 8 6 5 10 10 N 1.32611 * 125.19086 * 90.01853 * 9 8 6 11 11 C 1.32825 * 109.75813 * 179.97438 * 10 9 8 12 12 N 1.33823 * 132.50014 * 180.02562 * 11 10 9 13 13 C 1.31354 * 120.86339 * 179.97438 * 12 11 10 14 14 C 1.40050 * 120.31059 * 0.02562 * 13 12 11 15 15 C 1.35779 * 119.24102 * 0.02562 * 14 13 12 16 16 N 1.35980 * 119.02294 * 359.97438 * 15 14 13 17 17 N 1.31190 * 125.18198 * 269.71372 * 9 8 6 18 18 C 1.46923 * 118.73730 * 306.38501 * 5 4 2 19 19 C 1.53195 * 108.77575 * 53.61542 * 18 5 4 20 20 C 1.53043 * 109.49393 * 239.93668 * 2 1 3 21 21 H 1.08998 * 109.46060 * 58.66545 * 20 2 1 22 22 N 1.46496 * 109.44915 * 298.69525 * 20 2 1 23 23 C 1.36949 * 119.99616 * 154.94210 * 22 20 2 24 24 H 1.07999 * 119.99880 * 359.97438 * 23 22 20 25 25 C 1.38805 * 119.99695 * 179.97438 * 23 22 20 26 26 N 1.31624 * 120.00137 * 359.97438 * 25 23 22 27 27 Si 1.86797 * 120.00095 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.47056 * 359.97438 * 27 25 23 29 29 H 1.48503 * 109.47507 * 119.99882 * 27 25 23 30 30 H 1.48502 * 109.47297 * 240.00065 * 27 25 23 31 31 H 1.09000 * 109.46682 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46678 * 300.05876 * 1 2 3 33 33 H 1.08991 * 109.47219 * 60.06166 * 1 2 3 34 34 H 1.09001 * 109.58881 * 294.37192 * 4 2 1 35 35 H 1.08996 * 109.58907 * 54.66000 * 4 2 1 36 36 H 1.09002 * 109.47044 * 299.99355 * 8 6 5 37 37 H 1.09001 * 109.47565 * 59.99202 * 8 6 5 38 38 H 1.07995 * 119.84298 * 179.97438 * 13 12 11 39 39 H 1.07998 * 120.37295 * 179.97438 * 14 13 12 40 40 H 1.07990 * 120.48787 * 179.97438 * 15 14 13 41 41 H 1.08996 * 109.59375 * 293.82604 * 18 5 4 42 42 H 1.09006 * 109.58686 * 173.39604 * 18 5 4 43 43 H 1.08990 * 109.49959 * 185.41234 * 19 18 5 44 44 H 1.08999 * 109.49609 * 65.30943 * 19 18 5 45 45 H 0.96998 * 120.00391 * 334.93653 * 22 20 2 46 46 H 0.97007 * 119.99805 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7242 1.2493 5 7 3.5047 -0.8295 1.1692 6 6 4.2812 -0.3872 2.1780 7 8 3.7732 0.1038 3.1638 8 6 5.7806 -0.5016 2.0807 9 6 6.4096 0.0615 3.3290 10 7 6.6843 -0.6314 4.4258 11 6 7.2335 0.1661 5.3350 12 7 7.6784 -0.0518 6.5781 13 6 8.1918 0.9248 7.2909 14 6 8.2818 2.2170 6.7583 15 6 7.8320 2.4477 5.4981 16 7 7.3059 1.4156 4.7861 17 7 6.7740 1.3109 3.4943 18 6 4.1053 -1.4267 -0.0313 19 6 3.5709 -0.6946 -1.2664 20 6 2.0408 -0.7227 -1.2486 21 1 1.6581 -0.2238 -2.1390 22 7 1.5783 -2.1127 -1.2311 23 6 1.4468 -2.8053 -2.4052 24 1 1.6836 -2.3267 -3.3439 25 6 1.0091 -4.1224 -2.3886 26 7 0.7210 -4.7059 -1.2445 27 14 0.8290 -5.0671 -3.9900 28 1 1.2125 -4.1919 -5.1268 29 1 1.7128 -6.2602 -3.9632 30 1 -0.5821 -5.5000 -4.1534 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3632 0.5148 0.8895 33 1 -0.3633 0.5128 -0.8905 34 1 1.7638 -0.1587 2.1388 35 1 1.6034 -1.7211 1.2987 36 1 6.0589 -1.5502 1.9746 37 1 6.1322 0.0571 1.2133 38 1 8.5455 0.7306 8.2927 39 1 8.7033 3.0207 7.3436 40 1 7.8912 3.4363 5.0677 41 1 3.8376 -2.4818 -0.0877 42 1 5.1896 -1.3246 0.0131 43 1 3.9333 -1.1890 -2.1675 44 1 3.9159 0.3392 -1.2541 45 1 1.3653 -2.5424 -0.3880 46 1 0.4147 -5.6263 -1.2330 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036303104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:57 Heat of formation + Delta-G solvation = 121.416244 kcal Electronic energy + Delta-G solvation = -29837.513103 eV Core-core repulsion = 25765.421123 eV Total energy + Delta-G solvation = -4072.091979 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.16667 -40.12735 -39.09245 -37.65705 -34.88523 -34.29879 -33.07257 -32.41958 -31.39397 -30.97879 -29.74323 -29.15279 -26.22806 -25.16117 -24.76544 -24.00053 -23.46661 -21.74268 -21.59374 -19.58205 -18.72963 -18.40078 -18.14957 -17.41878 -17.14469 -16.65469 -16.47890 -15.64880 -15.36040 -14.92389 -14.60334 -14.30715 -13.96561 -13.83439 -13.73239 -13.53131 -13.33200 -13.15272 -12.94586 -12.83914 -12.52624 -12.28275 -12.23001 -12.10002 -11.51749 -11.36604 -11.18054 -10.92157 -10.79132 -10.48791 -10.47334 -10.40524 -10.32281 -10.15561 -10.03218 -9.83437 -9.56371 -9.52090 -9.10268 -8.93608 -8.23673 -6.97657 -5.78903 -3.07577 0.05794 0.38628 1.57929 2.20434 2.77310 2.90352 3.09545 3.32466 3.41524 3.47608 3.49813 3.61862 3.87754 4.18130 4.41714 4.57421 4.62381 4.65615 4.88751 5.11640 5.17947 5.21519 5.32480 5.37594 5.44758 5.52150 5.58930 5.71950 5.81413 5.82570 5.89883 5.94643 5.98068 6.07578 6.10421 6.25843 6.31869 6.40920 6.50991 6.62936 6.69053 6.76394 6.93322 7.00650 7.09325 7.66885 7.68413 7.69222 8.33359 8.39491 9.51191 10.07896 10.42864 11.43433 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.022874 B = 0.002231 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.804203 B =12547.439974 C =12963.621500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.121 3.879 5 N -0.597 5.597 6 C 0.524 3.476 7 O -0.545 6.545 8 C -0.054 4.054 9 C 0.305 3.695 10 N -0.509 5.509 11 C 0.441 3.559 12 N -0.452 5.452 13 C 0.203 3.797 14 C -0.228 4.228 15 C 0.174 3.826 16 N -0.326 5.326 17 N -0.322 5.322 18 C 0.110 3.890 19 C -0.150 4.150 20 C 0.178 3.822 21 H 0.051 0.949 22 N -0.719 5.719 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.904 3.096 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.293 1.293 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.190 0.810 39 H 0.174 0.826 40 H 0.182 0.818 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.508 16.472 13.563 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.001 4.001 5 N -0.329 5.329 6 C 0.310 3.690 7 O -0.423 6.423 8 C -0.096 4.096 9 C 0.024 3.976 10 N -0.240 5.240 11 C 0.081 3.919 12 N -0.167 5.167 13 C 0.017 3.983 14 C -0.253 4.253 15 C 0.036 3.964 16 N -0.106 5.106 17 N -0.153 5.153 18 C -0.012 4.012 19 C -0.191 4.191 20 C 0.068 3.932 21 H 0.069 0.931 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.579 5.579 27 Si 0.735 3.265 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.207 0.793 39 H 0.191 0.809 40 H 0.199 0.801 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.219 0.781 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 15.823 15.807 13.400 26.073 hybrid contribution 0.059 0.140 -0.741 0.756 sum 15.882 15.947 12.659 25.823 Atomic orbital electron populations 1.21666 0.94230 1.03213 1.00407 1.21706 0.96509 0.98832 0.95754 0.91645 1.21651 0.78217 1.01686 0.98590 1.48041 1.07216 1.59714 1.17969 1.19887 0.87847 0.78309 0.83004 1.90702 1.75199 1.45307 1.31092 1.20122 0.93143 1.04430 0.91899 1.23583 0.92740 0.86989 0.94286 1.70705 1.22655 1.30232 1.00425 1.22736 0.96203 0.80656 0.92347 1.68012 1.13301 1.33886 1.01459 1.23584 0.88171 0.87383 0.99204 1.21940 1.07388 1.00680 0.95323 1.22163 0.90094 0.93210 0.90919 1.48792 1.38844 1.10384 1.12547 1.78542 1.24825 1.19368 0.92579 1.21818 0.96315 0.99381 0.83697 1.22532 1.00536 0.98659 0.97414 1.20218 0.90794 0.87387 0.94837 0.93085 1.42495 1.78978 1.07695 1.06962 1.19256 1.37169 0.93832 0.86567 0.91193 1.24712 1.02305 0.97219 0.96581 1.69663 1.51707 1.12994 1.23582 0.86171 0.77276 0.79977 0.83046 1.20662 1.21980 1.22019 0.90998 0.93814 0.92802 0.89884 0.90471 0.85255 0.85824 0.79310 0.80858 0.80089 0.89279 0.91137 0.90583 0.93216 0.78066 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.05 37.16 0.34 -1.90 16 2 C -0.11 -1.78 2.67 -90.50 -0.24 -2.02 16 3 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 4 C 0.12 2.09 5.42 -3.71 -0.02 2.07 16 5 N -0.60 -9.74 2.97 -172.77 -0.51 -10.25 16 6 C 0.52 8.80 7.69 -10.99 -0.08 8.71 16 7 O -0.54 -11.16 15.45 5.56 0.09 -11.08 16 8 C -0.05 -0.72 4.67 -29.04 -0.14 -0.86 16 9 C 0.31 4.83 6.59 -157.00 -1.03 3.79 16 10 N -0.51 -8.75 11.25 -11.80 -0.13 -8.89 16 11 C 0.44 6.52 8.99 -323.13 -2.91 3.62 16 12 N -0.45 -5.38 10.48 -13.82 -0.14 -5.52 16 13 C 0.20 1.19 11.27 -17.08 -0.19 1.00 16 14 C -0.23 -0.88 10.07 -39.78 -0.40 -1.28 16 15 C 0.17 1.20 11.32 -16.59 -0.19 1.02 16 16 N -0.33 -4.15 3.91 -13.84 -0.05 -4.20 16 17 N -0.32 -4.84 12.78 32.39 0.41 -4.43 16 18 C 0.11 1.67 6.08 -3.71 -0.02 1.65 16 19 C -0.15 -2.38 5.78 -26.61 -0.15 -2.53 16 20 C 0.18 3.26 2.53 -67.89 -0.17 3.09 16 21 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 22 N -0.72 -16.31 3.64 -53.38 -0.19 -16.50 16 23 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 24 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 25 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 26 N -0.93 -27.01 13.06 55.49 0.72 -26.29 16 27 Si 0.90 21.72 29.55 -169.99 -5.02 16.69 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 30 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 31 H 0.07 1.35 7.54 -51.93 -0.39 0.96 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.48 7.01 -51.93 -0.36 1.11 16 35 H 0.08 1.47 6.64 -51.93 -0.34 1.13 16 36 H 0.13 1.51 7.94 -51.93 -0.41 1.09 16 37 H 0.12 1.30 7.69 -51.93 -0.40 0.90 16 38 H 0.19 0.23 8.06 -52.49 -0.42 -0.19 16 39 H 0.17 -0.13 8.06 -52.49 -0.42 -0.55 16 40 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.09 1.61 7.74 -51.93 -0.40 1.21 16 42 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.38 9.41 5.93 -40.82 -0.24 9.17 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -37.26 377.47 -10.82 -48.08 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -6.21 Total: 7.02 kcal Atomic # 6 Polarization: 15.14 SS G_CDS: -5.46 Total: 9.68 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: 0.10 Total: -76.09 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -37.26 -10.82 -48.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036303104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.497 kcal (2) G-P(sol) polarization free energy of solvation -37.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds