Wall clock time and date at job start Wed Apr 1 2020 03:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.52389 * 2 1 4 4 C 1.53191 * 109.49475 * 120.07925 * 2 1 3 5 5 N 1.46928 * 108.77343 * 174.58721 * 4 2 1 6 6 C 1.34784 * 120.62829 * 126.41175 * 5 4 2 7 7 O 1.21280 * 119.99866 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99526 * 179.97438 * 6 5 4 9 9 C 1.50702 * 109.46553 * 180.02562 * 8 6 5 10 10 N 1.32612 * 125.18426 * 269.68952 * 9 8 6 11 11 C 1.32828 * 109.75778 * 179.88696 * 10 9 8 12 12 N 1.33816 * 132.50491 * 180.11327 * 11 10 9 13 13 C 1.31355 * 120.86541 * 180.28885 * 12 11 10 14 14 C 1.40049 * 120.30952 * 0.02562 * 13 12 11 15 15 C 1.35782 * 119.24158 * 359.97438 * 14 13 12 16 16 N 1.35976 * 119.02019 * 0.02562 * 15 14 13 17 17 N 1.31186 * 125.18756 * 90.00281 * 9 8 6 18 18 C 1.46919 * 118.73982 * 306.39079 * 5 4 2 19 19 C 1.53195 * 108.89273 * 53.53793 * 18 5 4 20 20 C 1.53039 * 109.49929 * 239.91849 * 2 1 3 21 21 H 1.09007 * 109.45640 * 298.70737 * 20 2 1 22 22 N 1.46499 * 109.46160 * 58.66119 * 20 2 1 23 23 C 1.36928 * 120.00250 * 205.00378 * 22 20 2 24 24 H 1.08000 * 120.00193 * 359.97438 * 23 22 20 25 25 C 1.38812 * 120.00515 * 180.02562 * 23 22 20 26 26 N 1.31626 * 119.99431 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00596 * 179.97438 * 25 23 22 28 28 H 1.48507 * 109.46788 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47413 * 119.99496 * 27 25 23 30 30 H 1.48498 * 109.46785 * 239.99788 * 27 25 23 31 31 H 1.08996 * 109.47522 * 299.92308 * 1 2 3 32 32 H 1.09006 * 109.47027 * 59.92218 * 1 2 3 33 33 H 1.08998 * 109.46892 * 179.91700 * 1 2 3 34 34 H 1.08998 * 109.58966 * 54.79787 * 4 2 1 35 35 H 1.08999 * 109.58758 * 294.37144 * 4 2 1 36 36 H 1.08996 * 109.47104 * 299.99859 * 8 6 5 37 37 H 1.08994 * 109.47167 * 60.00297 * 8 6 5 38 38 H 1.07997 * 119.84232 * 180.02562 * 13 12 11 39 39 H 1.08001 * 120.37550 * 180.02562 * 14 13 12 40 40 H 1.07995 * 120.48574 * 180.02562 * 15 14 13 41 41 H 1.09002 * 109.58751 * 173.39743 * 18 5 4 42 42 H 1.08996 * 109.58750 * 293.67928 * 18 5 4 43 43 H 1.08997 * 109.50046 * 65.38734 * 19 18 5 44 44 H 1.09003 * 109.49733 * 185.48713 * 19 18 5 45 45 H 0.97007 * 119.99658 * 24.99911 * 22 20 2 46 46 H 0.97006 * 119.99397 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8291 1.1696 6 6 4.2811 -0.3863 2.1784 7 8 3.7730 0.1052 3.1639 8 6 5.7805 -0.5019 2.0816 9 6 6.4093 0.0609 3.3302 10 7 6.7789 1.3235 3.4973 11 6 7.2943 1.4837 4.7109 12 7 7.7980 2.5484 5.3460 13 6 8.2613 2.4456 6.5708 14 6 8.2357 1.2129 7.2350 15 6 7.7264 0.1270 6.5986 16 7 7.2547 0.2664 5.3309 17 7 6.6797 -0.6246 4.4155 18 6 4.1053 -1.4267 -0.0306 19 6 3.5713 -0.6980 -1.2679 20 6 2.0409 -0.7231 -1.2483 21 1 1.6967 -1.7573 -1.2352 22 7 1.5266 -0.0530 -2.4453 23 6 1.3965 -0.7493 -3.6171 24 1 1.6734 -1.7923 -3.6592 25 6 0.9097 -0.1143 -4.7515 26 7 0.5727 1.1571 -4.7004 27 14 0.7328 -1.0639 -6.3503 28 1 1.1770 -2.4660 -6.1449 29 1 -0.6891 -1.0523 -6.7783 30 1 1.5706 -0.4282 -7.3988 31 1 -0.3634 0.5126 0.8906 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0277 -0.0015 34 1 1.6052 -1.7215 1.2981 35 1 1.7638 -0.1579 2.1389 36 1 6.0580 -1.5507 1.9765 37 1 6.1327 0.0559 1.2139 38 1 8.6638 3.3158 7.0680 39 1 8.6160 1.1272 8.2423 40 1 7.6965 -0.8332 7.0919 41 1 5.1896 -1.3246 0.0139 42 1 3.8397 -2.4824 -0.0852 43 1 3.9164 0.3358 -1.2585 44 1 3.9340 -1.1951 -2.1676 45 1 1.2782 0.8839 -2.4076 46 1 0.2322 1.6007 -5.4930 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036303105.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:00 Heat of formation + Delta-G solvation = 119.057365 kcal Electronic energy + Delta-G solvation = -29416.658281 eV Core-core repulsion = 25344.464013 eV Total energy + Delta-G solvation = -4072.194268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.23060 -40.22897 -39.13893 -37.63239 -34.94456 -34.63795 -33.16463 -32.45162 -31.46434 -31.04297 -29.89225 -29.22306 -26.34086 -25.18723 -24.84845 -24.09059 -22.85798 -21.81539 -21.54751 -19.86320 -18.98224 -18.77215 -18.39028 -17.41329 -17.05993 -16.72980 -16.58890 -15.80677 -15.41785 -14.95498 -14.93521 -14.14719 -13.97240 -13.80656 -13.73139 -13.68585 -13.33512 -13.25359 -13.00113 -12.94884 -12.50982 -12.36112 -12.24793 -12.13376 -11.73069 -11.57652 -11.16226 -10.94609 -10.80896 -10.63219 -10.46487 -10.39707 -10.37813 -10.16211 -10.12355 -9.76576 -9.66277 -9.61103 -9.16202 -8.90737 -8.49662 -6.96088 -5.77298 -3.05994 0.00477 0.32767 1.51504 2.12645 2.61352 2.82112 3.02570 3.18408 3.42264 3.47729 3.50242 3.53670 3.82769 4.10750 4.36420 4.48170 4.56998 4.57946 4.83163 5.01896 5.02488 5.11804 5.26434 5.28366 5.36392 5.38888 5.52869 5.59541 5.69445 5.75496 5.78223 5.86591 5.89795 5.97359 6.09431 6.16044 6.31044 6.38485 6.44846 6.53034 6.64339 6.81866 6.93133 7.03960 7.06544 7.45195 7.61751 7.69121 8.16327 8.40845 9.52318 10.10112 10.44857 11.45185 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.025678 B = 0.002002 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.170156 B =13983.853774 C =14168.371547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.122 3.878 5 N -0.603 5.603 6 C 0.525 3.475 7 O -0.540 6.540 8 C -0.054 4.054 9 C 0.303 3.697 10 N -0.509 5.509 11 C 0.442 3.558 12 N -0.452 5.452 13 C 0.204 3.796 14 C -0.227 4.227 15 C 0.174 3.826 16 N -0.326 5.326 17 N -0.323 5.323 18 C 0.104 3.896 19 C -0.153 4.153 20 C 0.184 3.816 21 H 0.048 0.952 22 N -0.721 5.721 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.014 4.014 26 N -0.931 5.931 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.191 0.809 39 H 0.175 0.825 40 H 0.182 0.818 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.794 -3.878 25.259 30.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.089 0.911 4 C -0.001 4.001 5 N -0.336 5.336 6 C 0.311 3.689 7 O -0.417 6.417 8 C -0.096 4.096 9 C 0.022 3.978 10 N -0.240 5.240 11 C 0.082 3.918 12 N -0.166 5.166 13 C 0.017 3.983 14 C -0.252 4.252 15 C 0.036 3.964 16 N -0.106 5.106 17 N -0.154 5.154 18 C -0.019 4.019 19 C -0.194 4.194 20 C 0.073 3.927 21 H 0.066 0.934 22 N -0.361 5.361 23 C -0.368 4.368 24 H 0.088 0.912 25 C -0.210 4.210 26 N -0.579 5.579 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.207 0.793 39 H 0.192 0.808 40 H 0.199 0.801 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.096 0.904 45 H 0.218 0.782 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.157 -3.572 24.641 29.681 hybrid contribution 0.009 -0.769 -0.355 0.847 sum 16.166 -4.341 24.286 29.496 Atomic orbital electron populations 1.21656 0.94100 1.01745 1.01859 1.21745 0.96592 1.00150 0.94533 0.91141 1.21722 0.78037 1.00859 0.99441 1.48088 1.07278 1.60308 1.17899 1.19932 0.87920 0.78063 0.82954 1.90716 1.75174 1.44540 1.31284 1.20118 0.92958 1.03843 0.92686 1.23549 0.92917 0.87137 0.94199 1.70709 1.22257 1.17866 1.13178 1.22733 0.96227 0.82522 0.90361 1.68016 1.12885 1.25487 1.10239 1.23599 0.88637 0.97973 0.88055 1.21955 1.06864 0.92535 1.03860 1.22168 0.90620 1.02192 0.81456 1.48785 1.38765 1.10890 1.12111 1.78524 1.24121 1.12406 1.00335 1.21941 0.97566 0.97619 0.84783 1.22708 1.00424 1.00600 0.95703 1.20199 0.90366 0.95692 0.86429 0.93411 1.42419 1.76443 1.11464 1.05751 1.19255 1.35796 0.94116 0.87668 0.91162 1.24742 1.02141 0.96030 0.98068 1.69677 1.50012 1.09477 1.28774 0.86152 0.77289 0.78837 0.84095 1.20604 1.21957 1.21960 0.93852 0.90720 0.93056 0.91455 0.89428 0.85787 0.85118 0.79258 0.80811 0.80062 0.90427 0.91104 0.91971 0.90381 0.78188 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.02 37.16 0.34 -1.91 16 2 C -0.11 -1.84 2.46 -90.50 -0.22 -2.06 16 3 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 4 C 0.12 1.81 5.72 -3.71 -0.02 1.79 16 5 N -0.60 -8.48 2.97 -172.77 -0.51 -9.00 16 6 C 0.53 7.95 7.69 -10.98 -0.08 7.87 16 7 O -0.54 -10.29 15.45 5.56 0.09 -10.21 16 8 C -0.05 -0.65 4.67 -29.03 -0.14 -0.78 16 9 C 0.30 4.49 6.59 -157.01 -1.03 3.46 16 10 N -0.51 -8.37 11.25 -11.80 -0.13 -8.51 16 11 C 0.44 6.26 8.99 -323.13 -2.91 3.35 16 12 N -0.45 -5.15 10.48 -13.82 -0.14 -5.30 16 13 C 0.20 1.10 11.27 -17.08 -0.19 0.91 16 14 C -0.23 -0.75 10.07 -39.78 -0.40 -1.15 16 15 C 0.17 1.09 11.32 -16.59 -0.19 0.90 16 16 N -0.33 -3.92 3.91 -13.84 -0.05 -3.97 16 17 N -0.32 -4.55 12.78 32.39 0.41 -4.14 16 18 C 0.10 1.27 6.34 -3.71 -0.02 1.25 16 19 C -0.15 -2.47 5.67 -26.59 -0.15 -2.62 16 20 C 0.18 3.42 2.19 -67.87 -0.15 3.27 16 21 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 22 N -0.72 -17.19 4.41 -53.37 -0.24 -17.43 16 23 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 24 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 26 N -0.93 -27.70 13.06 55.49 0.72 -26.98 16 27 Si 0.90 22.01 29.55 -169.99 -5.02 16.99 16 28 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 30 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.44 7.36 -51.93 -0.38 1.06 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.39 7.00 -51.93 -0.36 1.02 16 36 H 0.12 1.08 7.94 -51.93 -0.41 0.67 16 37 H 0.13 1.36 7.69 -51.93 -0.40 0.96 16 38 H 0.19 0.15 8.06 -52.49 -0.42 -0.27 16 39 H 0.17 -0.21 8.06 -52.49 -0.42 -0.64 16 40 H 0.18 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.38 9.97 7.50 -40.82 -0.31 9.66 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 381.42 15.07 5.75 5.75 Total: -1.00 -38.58 381.42 -10.92 -49.50 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.37 Total: 5.95 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: -5.42 Total: 7.33 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: 0.06 Total: -75.32 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.58 -10.92 -49.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036303105.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.556 kcal (2) G-P(sol) polarization free energy of solvation -38.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds