Wall clock time and date at job start Wed Apr 1 2020 03:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.52699 * 2 1 4 4 C 1.53196 * 109.48804 * 239.90760 * 2 1 3 5 5 N 1.46924 * 108.76800 * 185.40124 * 4 2 1 6 6 C 1.34773 * 120.63215 * 233.60116 * 5 4 2 7 7 O 1.21282 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.00001 * 180.02562 * 6 5 4 9 9 C 1.50697 * 109.47153 * 179.97438 * 8 6 5 10 10 N 1.32615 * 125.19007 * 269.69525 * 9 8 6 11 11 C 1.32819 * 109.75774 * 179.87985 * 10 9 8 12 12 N 1.33823 * 132.50406 * 180.10797 * 11 10 9 13 13 C 1.31345 * 120.86908 * 180.29714 * 12 11 10 14 14 C 1.40045 * 120.31255 * 359.97438 * 13 12 11 15 15 C 1.35784 * 119.23825 * 0.02562 * 14 13 12 16 16 N 1.35973 * 119.02026 * 359.97438 * 15 14 13 17 17 N 1.31186 * 125.18237 * 90.00160 * 9 8 6 18 18 C 1.46932 * 118.73828 * 53.61710 * 5 4 2 19 19 C 1.53196 * 108.77384 * 306.39467 * 18 5 4 20 20 C 1.53036 * 109.31536 * 54.63418 * 19 18 5 21 21 H 1.09007 * 109.46211 * 58.63452 * 20 19 18 22 22 N 1.46496 * 109.46261 * 178.61527 * 20 19 18 23 23 C 1.36945 * 119.99718 * 275.02605 * 22 20 19 24 24 H 1.07997 * 119.99756 * 359.97438 * 23 22 20 25 25 C 1.38805 * 119.99878 * 179.97438 * 23 22 20 26 26 N 1.31624 * 120.00257 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99929 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47174 * 270.00277 * 27 25 23 29 29 H 1.48501 * 109.47062 * 30.00228 * 27 25 23 30 30 H 1.48499 * 109.46981 * 150.00382 * 27 25 23 31 31 H 1.09002 * 109.47271 * 299.92312 * 1 2 3 32 32 H 1.09001 * 109.46821 * 59.91874 * 1 2 3 33 33 H 1.08993 * 109.47267 * 179.91522 * 1 2 3 34 34 H 1.09005 * 109.57902 * 65.62432 * 4 2 1 35 35 H 1.08993 * 109.72026 * 305.26324 * 4 2 1 36 36 H 1.08990 * 109.47106 * 299.99661 * 8 6 5 37 37 H 1.09007 * 109.46881 * 59.99892 * 8 6 5 38 38 H 1.07997 * 119.84556 * 179.97438 * 13 12 11 39 39 H 1.07997 * 120.38501 * 180.02562 * 14 13 12 40 40 H 1.07998 * 120.48825 * 180.02562 * 15 14 13 41 41 H 1.08990 * 109.58621 * 186.60591 * 18 5 4 42 42 H 1.09004 * 109.69937 * 66.25035 * 18 5 4 43 43 H 1.08996 * 109.49437 * 294.68012 * 19 18 5 44 44 H 1.09000 * 109.52019 * 174.60075 * 19 18 5 45 45 H 0.96996 * 120.00499 * 95.02336 * 22 20 19 46 46 H 0.97001 * 119.99885 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0410 -0.7241 -1.2495 5 7 3.5043 -0.8292 -1.1697 6 6 4.2807 -0.3864 -2.1785 7 8 3.7725 0.1049 -3.1640 8 6 5.7802 -0.5017 -2.0818 9 6 6.4088 0.0610 -3.3304 10 7 6.6875 -0.6332 -4.4254 11 6 7.2323 0.1649 -5.3366 12 7 7.6763 -0.0531 -6.5801 13 6 8.1897 0.9232 -7.2932 14 6 8.2804 2.2153 -6.7608 15 6 7.8324 2.4461 -5.5000 16 7 7.3063 1.4142 -4.7876 17 7 6.7690 1.3113 -3.4978 18 6 4.1053 -1.4265 0.0307 19 6 3.5707 -0.6948 1.2659 20 6 2.0408 -0.7231 1.2484 21 1 1.6968 -1.7574 1.2352 22 7 1.5264 -0.0529 2.4453 23 6 1.3957 -0.7494 3.6171 24 1 1.6715 -1.7927 3.6588 25 6 0.9089 -0.1143 4.7513 26 7 0.5724 1.1572 4.7004 27 14 0.7300 -1.0644 6.3496 28 1 -0.6222 -1.6749 6.4139 29 1 1.7590 -2.1336 6.4078 30 1 0.9109 -0.1402 7.4978 31 1 -0.3634 0.5126 0.8907 32 1 -0.3633 0.5151 -0.8893 33 1 -0.3633 -1.0276 -0.0015 34 1 1.7633 -0.1583 -2.1389 35 1 1.6053 -1.7219 -1.3005 36 1 6.1323 0.0561 -1.2142 37 1 6.0579 -1.5506 -1.9766 38 1 8.5434 0.7286 -8.2949 39 1 8.7019 3.0190 -7.3463 40 1 7.8922 3.4348 -5.0696 41 1 5.1894 -1.3242 -0.0139 42 1 3.8398 -2.4822 0.0880 43 1 3.9157 0.3391 1.2538 44 1 3.9335 -1.1888 2.1673 45 1 1.2785 0.8841 2.4078 46 1 0.2319 1.6009 5.4929 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036303107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:44:03 Heat of formation + Delta-G solvation = 118.781431 kcal Electronic energy + Delta-G solvation = -29415.347258 eV Core-core repulsion = 25343.141025 eV Total energy + Delta-G solvation = -4072.206233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.23035 -40.23147 -39.14112 -37.63988 -34.94425 -34.64455 -33.16969 -32.45526 -31.47493 -31.04077 -29.89558 -29.23261 -26.34633 -25.18874 -24.85444 -24.09340 -22.86345 -21.81810 -21.55145 -19.87323 -19.00198 -18.74001 -18.40818 -17.41500 -17.07188 -16.72810 -16.59042 -15.80190 -15.41437 -14.96459 -14.93396 -14.15756 -13.97343 -13.82478 -13.74208 -13.67123 -13.33621 -13.26874 -13.01269 -12.92629 -12.52287 -12.37142 -12.24600 -12.13462 -11.73598 -11.58209 -11.17340 -10.94539 -10.82032 -10.63974 -10.47031 -10.41094 -10.39689 -10.20589 -10.12461 -9.77598 -9.66620 -9.61929 -9.16164 -8.91649 -8.49834 -6.97696 -5.78695 -3.07461 0.00419 0.33226 1.52224 2.12863 2.61363 2.82021 3.01388 3.17682 3.41556 3.46895 3.48521 3.55053 3.83788 4.10254 4.36617 4.48190 4.56274 4.58406 4.84026 5.00719 5.05559 5.10046 5.25543 5.27355 5.35730 5.38700 5.51683 5.59652 5.68469 5.75579 5.77911 5.87016 5.89571 5.96837 6.08706 6.15098 6.29549 6.37670 6.43582 6.52029 6.62633 6.80598 6.91879 7.03191 7.04976 7.45145 7.60861 7.67563 8.16423 8.39528 9.50957 10.08540 10.43269 11.43722 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.026270 B = 0.001995 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.596150 B =14029.140265 C =14222.633191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 H 0.069 0.931 4 C 0.122 3.878 5 N -0.603 5.603 6 C 0.525 3.475 7 O -0.540 6.540 8 C -0.054 4.054 9 C 0.303 3.697 10 N -0.511 5.511 11 C 0.441 3.559 12 N -0.454 5.454 13 C 0.204 3.796 14 C -0.228 4.228 15 C 0.175 3.825 16 N -0.326 5.326 17 N -0.319 5.319 18 C 0.104 3.896 19 C -0.153 4.153 20 C 0.183 3.817 21 H 0.049 0.951 22 N -0.721 5.721 23 C -0.238 4.238 24 H 0.070 0.930 25 C -0.013 4.013 26 N -0.932 5.932 27 Si 0.905 3.095 28 H -0.290 1.290 29 H -0.282 1.282 30 H -0.292 1.292 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.190 0.810 39 H 0.175 0.825 40 H 0.183 0.817 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.078 0.922 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.034 1.112 -22.863 28.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.001 4.001 5 N -0.336 5.336 6 C 0.311 3.689 7 O -0.417 6.417 8 C -0.096 4.096 9 C 0.021 3.979 10 N -0.243 5.243 11 C 0.081 3.919 12 N -0.168 5.168 13 C 0.018 3.982 14 C -0.253 4.253 15 C 0.037 3.963 16 N -0.105 5.105 17 N -0.150 5.150 18 C -0.019 4.019 19 C -0.194 4.194 20 C 0.073 3.927 21 H 0.067 0.933 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.209 4.209 26 N -0.580 5.580 27 Si 0.737 3.263 28 H -0.218 1.218 29 H -0.208 1.208 30 H -0.219 1.219 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.207 0.793 39 H 0.192 0.808 40 H 0.200 0.800 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.354 0.409 -22.722 27.998 hybrid contribution 0.071 0.817 1.106 1.377 sum 16.425 1.226 -21.616 27.176 Atomic orbital electron populations 1.21656 0.94102 1.01785 1.01842 1.21746 0.96599 1.00050 0.94577 0.91242 1.21722 0.78048 1.00941 0.99373 1.48082 1.07273 1.60299 1.17904 1.19931 0.87934 0.78113 0.82893 1.90717 1.75176 1.44710 1.31124 1.20116 0.92935 1.04363 0.92180 1.23551 0.92994 0.87043 0.94300 1.70675 1.23036 1.30220 1.00372 1.22717 0.96205 0.80681 0.92309 1.68004 1.13451 1.33903 1.01466 1.23586 0.88052 0.87384 0.99196 1.21954 1.07352 1.00699 0.95276 1.22194 0.89955 0.93256 0.90875 1.48785 1.38726 1.10420 1.12593 1.78583 1.24363 1.19305 0.92731 1.21946 0.97548 0.97735 0.84700 1.22699 1.00440 1.00471 0.95788 1.20200 0.90358 0.95749 0.86404 0.93321 1.42412 1.76478 1.11417 1.05769 1.19215 1.35912 0.94078 0.87677 0.91196 1.24736 1.02111 0.96019 0.98074 1.69662 1.49981 1.09465 1.28910 0.86220 0.77781 0.78665 0.83682 1.21789 1.20797 1.21875 0.90730 0.93865 0.93013 0.89452 0.91391 0.85598 0.85312 0.79274 0.80793 0.79987 0.90434 0.90998 0.92086 0.90387 0.78215 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.03 37.15 0.34 -1.90 16 2 C -0.11 -1.81 2.46 -90.50 -0.22 -2.03 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C 0.12 1.80 5.72 -3.71 -0.02 1.78 16 5 N -0.60 -8.48 2.97 -172.76 -0.51 -9.00 16 6 C 0.53 7.96 7.69 -10.98 -0.08 7.87 16 7 O -0.54 -10.30 15.45 5.56 0.09 -10.22 16 8 C -0.05 -0.65 4.67 -29.03 -0.14 -0.78 16 9 C 0.30 4.48 6.59 -157.01 -1.03 3.45 16 10 N -0.51 -8.17 11.25 -11.80 -0.13 -8.30 16 11 C 0.44 6.15 8.99 -323.14 -2.91 3.24 16 12 N -0.45 -5.02 10.48 -13.82 -0.14 -5.16 16 13 C 0.20 1.07 11.27 -17.08 -0.19 0.88 16 14 C -0.23 -0.78 10.07 -39.78 -0.40 -1.18 16 15 C 0.18 1.16 11.32 -16.60 -0.19 0.97 16 16 N -0.33 -3.98 3.91 -13.84 -0.05 -4.04 16 17 N -0.32 -4.66 12.78 32.39 0.41 -4.25 16 18 C 0.10 1.27 6.34 -3.70 -0.02 1.24 16 19 C -0.15 -2.43 5.66 -26.61 -0.15 -2.59 16 20 C 0.18 3.39 2.19 -67.89 -0.15 3.24 16 21 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 22 N -0.72 -17.06 4.41 -53.38 -0.24 -17.29 16 23 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 24 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 25 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 26 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 27 Si 0.91 21.92 29.55 -169.99 -5.02 16.89 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 31 H 0.07 1.43 7.36 -51.93 -0.38 1.05 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.38 7.01 -51.93 -0.36 1.02 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.13 1.23 7.69 -51.93 -0.40 0.83 16 37 H 0.13 1.21 7.94 -51.93 -0.41 0.80 16 38 H 0.19 0.11 8.06 -52.49 -0.42 -0.31 16 39 H 0.17 -0.18 8.06 -52.49 -0.42 -0.61 16 40 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 41 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.38 9.87 7.50 -40.82 -0.31 9.56 16 46 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 381.41 15.07 5.75 5.75 Total: -1.00 -38.26 381.41 -10.92 -49.17 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.37 Total: 5.96 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -5.42 Total: 7.29 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: 0.06 Total: -74.85 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -38.26 -10.92 -49.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036303107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.954 kcal (2) G-P(sol) polarization free energy of solvation -38.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds