Wall clock time and date at job start Wed Apr 1 2020 02:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47039 * 2 1 4 4 H 1.09001 * 109.49849 * 304.93062 * 3 2 1 5 5 C 1.53184 * 109.49978 * 64.99862 * 3 2 1 6 6 N 1.46920 * 108.77956 * 174.58503 * 5 3 2 7 7 C 1.34784 * 120.63069 * 126.11360 * 6 5 3 8 8 O 1.21565 * 119.99963 * 354.18911 * 7 6 5 9 9 C 1.47715 * 119.99763 * 174.18683 * 7 6 5 10 10 C 1.40113 * 120.35703 * 324.02736 * 9 7 6 11 11 N 1.31257 * 121.15203 * 179.97438 * 10 9 7 12 12 C 1.32717 * 121.80136 * 0.02562 * 11 10 9 13 13 N 1.37119 * 133.40261 * 180.02562 * 12 11 10 14 14 H 0.96999 * 126.59154 * 359.97438 * 13 12 11 15 15 N 1.40191 * 106.81462 * 179.97438 * 13 12 11 16 16 N 1.28666 * 109.51429 * 0.02562 * 15 13 12 17 17 C 1.35334 * 109.99556 * 359.97438 * 16 15 13 18 18 C 1.39437 * 120.34880 * 143.75453 * 9 7 6 19 19 C 1.46922 * 118.74028 * 306.39468 * 6 5 3 20 20 C 1.53191 * 108.77569 * 53.60639 * 19 6 5 21 21 C 1.53038 * 109.31185 * 305.36404 * 20 19 6 22 22 H 1.09002 * 109.45174 * 181.38074 * 21 20 19 23 23 N 1.46502 * 109.46393 * 301.34622 * 21 20 19 24 24 C 1.36933 * 119.99999 * 275.07252 * 23 21 20 25 25 H 1.07999 * 120.00438 * 359.97438 * 24 23 21 26 26 C 1.38811 * 120.00116 * 179.97438 * 24 23 21 27 27 N 1.31625 * 119.99970 * 359.97438 * 26 24 23 28 28 Si 1.86805 * 120.00162 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47190 * 90.00108 * 28 26 24 30 30 H 1.48501 * 109.46800 * 210.00103 * 28 26 24 31 31 H 1.48501 * 109.47031 * 329.99945 * 28 26 24 32 32 H 1.09005 * 109.47296 * 60.00198 * 1 2 3 33 33 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47378 * 300.00362 * 1 2 3 35 35 H 1.09002 * 109.47470 * 239.99769 * 2 1 3 36 36 H 1.09005 * 109.47296 * 119.99802 * 2 1 3 37 37 H 1.09000 * 109.58766 * 54.79871 * 5 3 2 38 38 H 1.09004 * 109.70446 * 294.44968 * 5 3 2 39 39 H 1.08001 * 119.42401 * 0.02562 * 10 9 7 40 40 H 1.07994 * 120.95155 * 359.97251 * 18 9 7 41 41 H 1.09006 * 109.59215 * 173.39286 * 19 6 5 42 42 H 1.08999 * 109.58667 * 293.81980 * 19 6 5 43 43 H 1.09001 * 109.49749 * 185.41494 * 20 19 6 44 44 H 1.08997 * 109.50139 * 65.31897 * 20 19 6 45 45 H 0.96999 * 120.00037 * 95.05952 * 23 21 20 46 46 H 0.97005 * 120.00153 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9817 -0.8424 5 6 1.6350 2.1281 1.3087 6 7 2.2414 3.4656 1.3493 7 6 1.4806 4.5585 1.5577 8 8 0.2703 4.4559 1.6088 9 6 2.1174 5.8809 1.7240 10 6 3.3426 5.9977 2.3937 11 7 3.9225 7.1648 2.5500 12 6 3.3800 8.2831 2.0849 13 7 3.7655 9.5988 2.1103 14 1 4.5731 9.9570 2.5107 15 7 2.7680 10.3266 1.4465 16 7 1.8450 9.5244 1.0464 17 6 2.1500 8.2544 1.4007 18 6 1.5084 7.0257 1.2113 19 6 3.6920 3.5899 1.1522 20 6 4.0739 2.8881 -0.1548 21 6 3.5655 1.4450 -0.1217 22 1 3.8574 0.9361 -1.0404 23 7 4.1479 0.7485 1.0281 24 6 5.3860 0.1728 0.9246 25 1 5.9331 0.2318 -0.0047 26 6 5.9381 -0.4867 2.0142 27 7 5.2717 -0.5582 3.1470 28 14 7.6268 -1.2726 1.8728 29 1 8.6664 -0.2851 2.2591 30 1 7.7022 -2.4495 2.7754 31 1 7.8543 -1.7082 0.4714 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 1.9906 1.5398 2.1546 38 1 0.5496 2.2172 1.3563 39 1 3.8185 5.1118 2.7875 40 1 0.5665 6.9660 0.6864 41 1 3.9640 4.6439 1.0939 42 1 4.2155 3.1209 1.9853 43 1 5.1584 2.8893 -0.2650 44 1 3.6218 3.4139 -0.9958 45 1 3.6566 0.6953 1.8627 46 1 5.6573 -1.0194 3.9083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037861239.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:10 Heat of formation + Delta-G solvation = 109.385288 kcal Electronic energy + Delta-G solvation = -30593.209006 eV Core-core repulsion = 26520.595325 eV Total energy + Delta-G solvation = -4072.613681 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.71073 -40.55742 -38.78064 -37.76436 -34.67349 -34.33090 -33.80763 -32.03935 -31.80273 -31.12690 -29.51076 -28.51287 -25.85042 -25.29874 -23.99529 -23.75714 -23.47496 -22.95343 -20.94309 -20.33949 -19.02634 -18.84901 -18.32633 -17.41878 -16.93852 -16.55085 -16.29415 -15.88924 -15.07193 -14.91067 -14.64037 -14.12694 -14.06345 -13.80901 -13.60118 -13.39602 -13.33684 -13.26233 -12.99964 -12.83080 -12.62412 -12.39761 -12.20005 -11.91853 -11.75172 -11.47955 -11.15478 -11.03741 -10.86454 -10.81448 -10.46685 -10.33425 -10.23684 -10.19667 -9.86172 -9.71987 -9.64846 -9.60595 -9.30725 -8.98003 -8.38882 -7.04407 -5.85185 -3.13812 -0.14235 0.37597 1.65633 1.71842 2.57652 2.90518 3.29375 3.37465 3.44019 3.45220 3.54399 3.87815 3.94175 4.28975 4.32810 4.52305 4.57326 4.97373 5.05457 5.18139 5.25625 5.31357 5.38452 5.42599 5.47118 5.53063 5.64527 5.71947 5.74204 5.79324 5.85776 5.97676 6.06738 6.09560 6.26258 6.29797 6.30761 6.36069 6.49696 6.52929 6.62600 6.69305 6.85569 6.92478 7.13489 7.40899 7.48234 7.63588 8.11719 8.33278 9.45372 10.00811 10.35991 11.36967 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003239 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.243072 B = 8643.107592 C =10349.601710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.067 0.933 5 C 0.119 3.881 6 N -0.592 5.592 7 C 0.566 3.434 8 O -0.539 6.539 9 C -0.196 4.196 10 C 0.214 3.786 11 N -0.488 5.488 12 C 0.293 3.707 13 N -0.484 5.484 14 H 0.454 0.546 15 N 0.014 4.986 16 N -0.193 5.193 17 C -0.075 4.075 18 C 0.074 3.926 19 C 0.101 3.899 20 C -0.150 4.150 21 C 0.178 3.822 22 H 0.052 0.948 23 N -0.718 5.718 24 C -0.238 4.238 25 H 0.069 0.931 26 C -0.010 4.010 27 N -0.931 5.931 28 Si 0.903 3.097 29 H -0.291 1.291 30 H -0.293 1.293 31 H -0.283 1.283 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.190 0.810 40 H 0.162 0.838 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.050 0.950 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.520 13.764 -3.711 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.086 0.914 5 C -0.003 4.003 6 N -0.323 5.323 7 C 0.353 3.647 8 O -0.417 6.417 9 C -0.205 4.205 10 C 0.041 3.959 11 N -0.202 5.202 12 C 0.048 3.952 13 N -0.209 5.209 14 H 0.302 0.698 15 N 0.031 4.969 16 N -0.074 5.074 17 C -0.201 4.201 18 C 0.044 3.956 19 C -0.021 4.021 20 C -0.191 4.191 21 C 0.068 3.932 22 H 0.070 0.930 23 N -0.361 5.361 24 C -0.370 4.370 25 H 0.087 0.913 26 C -0.206 4.206 27 N -0.579 5.579 28 Si 0.734 3.266 29 H -0.218 1.218 30 H -0.219 1.219 31 H -0.209 1.209 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.207 0.793 40 H 0.180 0.820 41 H 0.091 0.909 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.068 0.932 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.696 15.152 -3.780 16.623 hybrid contribution 1.224 -1.134 0.429 1.723 sum -4.472 14.018 -3.351 15.091 Atomic orbital electron populations 1.21857 0.96767 1.01086 1.01389 1.21417 0.94304 0.95628 1.03449 1.21755 0.97359 0.96241 0.96968 0.91422 1.21784 0.98978 0.80835 0.98687 1.48029 1.08721 1.06464 1.69043 1.17707 0.86416 0.83088 0.77482 1.90788 1.13327 1.85751 1.51819 1.20801 0.98379 0.95148 1.06162 1.23531 0.89112 0.94036 0.89195 1.66800 1.34922 0.96125 1.22353 1.19632 0.92207 0.87441 0.95948 1.47517 1.22645 1.03067 1.47668 0.69789 1.81716 0.92666 1.15588 1.06890 1.74878 1.18086 0.99746 1.14681 1.20355 0.97720 0.93711 1.08289 1.20974 0.97431 0.86797 0.90441 1.22187 0.79081 1.00056 1.00824 1.22536 1.02019 0.99337 0.95199 1.20227 0.89735 0.90536 0.92740 0.92989 1.42473 1.19017 1.64055 1.10541 1.19199 0.93504 1.27177 0.97086 0.91270 1.24689 0.98477 1.01382 0.96041 1.69639 1.38019 1.48052 1.02237 0.86259 0.84436 0.78797 0.77072 1.21812 1.21898 1.20872 0.93349 0.93155 0.92747 0.91988 0.90429 0.90237 0.89218 0.79320 0.82037 0.90918 0.88862 0.90506 0.93177 0.78085 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.67 37.15 0.36 -1.56 16 2 C -0.11 -1.61 5.19 -26.73 -0.14 -1.75 16 3 C -0.10 -1.52 2.14 -90.50 -0.19 -1.71 16 4 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 5 C 0.12 1.77 5.03 -3.72 -0.02 1.75 16 6 N -0.59 -8.26 2.97 -173.94 -0.52 -8.78 16 7 C 0.57 7.97 7.38 -12.39 -0.09 7.87 16 8 O -0.54 -9.01 16.30 5.31 0.09 -8.92 16 9 C -0.20 -2.33 5.27 -104.88 -0.55 -2.89 16 10 C 0.21 2.39 8.52 -17.09 -0.15 2.24 16 11 N -0.49 -5.66 10.37 -12.03 -0.12 -5.78 16 12 C 0.29 3.33 8.49 -155.93 -1.32 2.01 16 13 N -0.48 -4.48 7.53 31.15 0.23 -4.25 16 14 H 0.45 2.61 8.96 -182.53 -1.64 0.97 16 15 N 0.01 0.16 13.82 60.35 0.83 0.99 16 16 N -0.19 -2.37 12.40 32.17 0.40 -1.97 16 17 C -0.08 -0.90 7.27 -84.74 -0.62 -1.51 16 18 C 0.07 0.84 9.80 -38.51 -0.38 0.47 16 19 C 0.10 1.37 4.53 -3.71 -0.02 1.35 16 20 C -0.15 -2.21 5.78 -26.61 -0.15 -2.36 16 21 C 0.18 3.00 2.53 -67.89 -0.17 2.83 16 22 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 23 N -0.72 -15.14 3.72 -53.38 -0.20 -15.34 16 24 C -0.24 -5.85 9.93 -15.06 -0.15 -6.00 16 25 H 0.07 1.68 7.83 -52.49 -0.41 1.27 16 26 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 27 N -0.93 -25.71 13.06 55.49 0.72 -24.98 16 28 Si 0.90 20.96 29.55 -169.99 -5.02 15.93 16 29 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 30 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 31 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.33 7.69 -51.93 -0.40 0.93 16 37 H 0.08 1.31 6.64 -51.93 -0.34 0.97 16 38 H 0.09 1.34 5.72 -51.93 -0.30 1.04 16 39 H 0.19 1.92 6.12 -52.49 -0.32 1.60 16 40 H 0.16 1.65 8.05 -52.49 -0.42 1.22 16 41 H 0.07 0.84 4.51 -51.93 -0.23 0.61 16 42 H 0.09 1.46 7.66 -51.93 -0.40 1.06 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.38 8.66 5.94 -40.82 -0.24 8.42 16 46 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -29.37 369.12 -8.85 -38.23 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.14 Total: 8.92 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.69 Total: 0.39 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 1.35 Total: -60.11 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.37 -8.85 -38.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037861239.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.611 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds