Wall clock time and date at job start Wed Apr 1 2020 02:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47039 * 2 1 4 4 H 1.09001 * 109.49849 * 304.93062 * 3 2 1 5 5 C 1.53184 * 109.49978 * 64.99862 * 3 2 1 6 6 N 1.46920 * 108.77956 * 174.58503 * 5 3 2 7 7 C 1.34784 * 120.63069 * 126.11360 * 6 5 3 8 8 O 1.21565 * 119.99963 * 354.18911 * 7 6 5 9 9 C 1.47715 * 119.99763 * 174.18683 * 7 6 5 10 10 C 1.40113 * 120.35703 * 324.02736 * 9 7 6 11 11 N 1.31257 * 121.15203 * 179.97438 * 10 9 7 12 12 C 1.32717 * 121.80136 * 0.02562 * 11 10 9 13 13 N 1.37119 * 133.40261 * 180.02562 * 12 11 10 14 14 H 0.96999 * 126.59154 * 359.97438 * 13 12 11 15 15 N 1.40191 * 106.81462 * 179.97438 * 13 12 11 16 16 N 1.28666 * 109.51429 * 0.02562 * 15 13 12 17 17 C 1.35334 * 109.99556 * 359.97438 * 16 15 13 18 18 C 1.39437 * 120.34880 * 143.75453 * 9 7 6 19 19 C 1.46922 * 118.74028 * 306.39468 * 6 5 3 20 20 C 1.53191 * 108.77569 * 53.60639 * 19 6 5 21 21 C 1.53038 * 109.31185 * 305.36404 * 20 19 6 22 22 H 1.09002 * 109.45174 * 181.38074 * 21 20 19 23 23 N 1.46502 * 109.46393 * 301.34622 * 21 20 19 24 24 C 1.36933 * 119.99999 * 275.07252 * 23 21 20 25 25 H 1.07999 * 120.00438 * 359.97438 * 24 23 21 26 26 C 1.38811 * 120.00116 * 179.97438 * 24 23 21 27 27 N 1.31625 * 119.99970 * 359.97438 * 26 24 23 28 28 Si 1.86805 * 120.00162 * 179.97438 * 26 24 23 29 29 H 1.48496 * 109.47190 * 90.00108 * 28 26 24 30 30 H 1.48501 * 109.46800 * 210.00103 * 28 26 24 31 31 H 1.48501 * 109.47031 * 329.99945 * 28 26 24 32 32 H 1.09005 * 109.47296 * 60.00198 * 1 2 3 33 33 H 1.09007 * 109.47110 * 179.97438 * 1 2 3 34 34 H 1.08993 * 109.47378 * 300.00362 * 1 2 3 35 35 H 1.09002 * 109.47470 * 239.99769 * 2 1 3 36 36 H 1.09005 * 109.47296 * 119.99802 * 2 1 3 37 37 H 1.09000 * 109.58766 * 54.79871 * 5 3 2 38 38 H 1.09004 * 109.70446 * 294.44968 * 5 3 2 39 39 H 1.08001 * 119.42401 * 0.02562 * 10 9 7 40 40 H 1.07994 * 120.95155 * 359.97251 * 18 9 7 41 41 H 1.09006 * 109.59215 * 173.39286 * 19 6 5 42 42 H 1.08999 * 109.58667 * 293.81980 * 19 6 5 43 43 H 1.09001 * 109.49749 * 185.41494 * 20 19 6 44 44 H 1.08997 * 109.50139 * 65.31897 * 20 19 6 45 45 H 0.96999 * 120.00037 * 95.05952 * 23 21 20 46 46 H 0.97005 * 120.00153 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9817 -0.8424 5 6 1.6350 2.1281 1.3087 6 7 2.2414 3.4656 1.3493 7 6 1.4806 4.5585 1.5577 8 8 0.2703 4.4559 1.6088 9 6 2.1174 5.8809 1.7240 10 6 3.3426 5.9977 2.3937 11 7 3.9225 7.1648 2.5500 12 6 3.3800 8.2831 2.0849 13 7 3.7655 9.5988 2.1103 14 1 4.5731 9.9570 2.5107 15 7 2.7680 10.3266 1.4465 16 7 1.8450 9.5244 1.0464 17 6 2.1500 8.2544 1.4007 18 6 1.5084 7.0257 1.2113 19 6 3.6920 3.5899 1.1522 20 6 4.0739 2.8881 -0.1548 21 6 3.5655 1.4450 -0.1217 22 1 3.8574 0.9361 -1.0404 23 7 4.1479 0.7485 1.0281 24 6 5.3860 0.1728 0.9246 25 1 5.9331 0.2318 -0.0047 26 6 5.9381 -0.4867 2.0142 27 7 5.2717 -0.5582 3.1470 28 14 7.6268 -1.2726 1.8728 29 1 8.6664 -0.2851 2.2591 30 1 7.7022 -2.4495 2.7754 31 1 7.8543 -1.7082 0.4714 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 1.9906 1.5398 2.1546 38 1 0.5496 2.2172 1.3563 39 1 3.8185 5.1118 2.7875 40 1 0.5665 6.9660 0.6864 41 1 3.9640 4.6439 1.0939 42 1 4.2155 3.1209 1.9853 43 1 5.1584 2.8893 -0.2650 44 1 3.6218 3.4139 -0.9958 45 1 3.6566 0.6953 1.8627 46 1 5.6573 -1.0194 3.9083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037861239.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:09 Heat of formation + Delta-G solvation = 90.781354 kcal Electronic energy + Delta-G solvation = -30594.015733 eV Core-core repulsion = 26520.595325 eV Total energy + Delta-G solvation = -4073.420408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.59164 -41.68149 -39.83374 -38.95695 -35.96799 -35.37401 -35.15624 -33.38241 -32.93227 -32.08660 -30.98441 -29.79838 -27.03812 -26.24593 -25.53230 -24.93206 -24.71623 -23.85452 -22.16735 -21.42657 -20.03302 -19.88215 -19.46285 -19.19464 -17.94694 -17.55118 -17.26185 -17.01912 -16.50994 -16.13647 -16.02480 -15.59645 -15.31643 -14.95018 -14.75397 -14.55447 -14.52971 -14.31994 -14.15646 -13.98595 -13.75298 -13.59348 -13.19260 -13.01125 -12.90008 -12.81871 -12.70751 -12.59015 -12.30052 -12.14334 -12.04069 -11.79144 -11.57524 -11.40289 -11.33005 -11.06509 -10.80670 -10.72052 -10.51050 -10.23619 -9.61332 -8.85745 -7.83577 -5.08603 -1.01874 -0.55107 0.83112 0.86062 1.51167 1.52698 1.54718 1.60844 1.81655 2.33135 2.63787 2.64411 2.99064 3.06735 3.31902 3.43510 3.50779 3.62553 3.85201 3.92479 4.04633 4.12872 4.13312 4.27887 4.38565 4.43354 4.50634 4.52875 4.59374 4.65042 4.74875 4.87171 4.89434 4.91961 5.06323 5.08850 5.23272 5.27325 5.29948 5.33881 5.46373 5.56733 5.62510 5.65766 5.70332 6.25688 6.34605 6.38690 6.54273 6.98060 7.47255 8.23199 8.47152 9.39241 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.003239 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.243072 B = 8643.107592 C =10349.601710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.093 4.093 4 H 0.085 0.915 5 C 0.125 3.875 6 N -0.590 5.590 7 C 0.573 3.427 8 O -0.565 6.565 9 C -0.199 4.199 10 C 0.217 3.783 11 N -0.491 5.491 12 C 0.287 3.713 13 N -0.465 5.465 14 H 0.469 0.531 15 N 0.015 4.985 16 N -0.209 5.209 17 C -0.084 4.084 18 C 0.083 3.917 19 C 0.108 3.892 20 C -0.144 4.144 21 C 0.173 3.827 22 H 0.045 0.955 23 N -0.722 5.722 24 C -0.223 4.223 25 H 0.073 0.927 26 C -0.068 4.068 27 N -0.965 5.965 28 Si 0.957 3.043 29 H -0.291 1.291 30 H -0.305 1.305 31 H -0.275 1.275 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.198 0.802 40 H 0.172 0.828 41 H 0.099 0.901 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.376 0.624 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.520 15.319 -4.967 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.112 4.112 4 H 0.103 0.897 5 C 0.002 3.998 6 N -0.320 5.320 7 C 0.361 3.639 8 O -0.445 6.445 9 C -0.208 4.208 10 C 0.044 3.956 11 N -0.205 5.205 12 C 0.042 3.958 13 N -0.192 5.192 14 H 0.321 0.679 15 N 0.032 4.968 16 N -0.090 5.090 17 C -0.210 4.210 18 C 0.052 3.948 19 C -0.014 4.014 20 C -0.184 4.184 21 C 0.064 3.936 22 H 0.063 0.937 23 N -0.364 5.364 24 C -0.355 4.355 25 H 0.091 0.909 26 C -0.261 4.261 27 N -0.616 5.616 28 Si 0.788 3.212 29 H -0.219 1.219 30 H -0.232 1.232 31 H -0.200 1.200 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.214 0.786 40 H 0.190 0.810 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.091 0.909 45 H 0.210 0.790 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.675 16.754 -5.083 18.405 hybrid contribution 1.193 -1.530 0.761 2.084 sum -4.482 15.224 -4.322 16.448 Atomic orbital electron populations 1.21792 0.94801 1.01836 1.01989 1.21337 0.96007 0.95245 1.01778 1.21662 0.95690 0.96448 0.97433 0.89655 1.21626 0.99010 0.81163 0.97952 1.47998 1.08820 1.06212 1.68982 1.17890 0.85985 0.83551 0.76513 1.90777 1.14523 1.86206 1.53001 1.20550 0.98785 0.94119 1.07311 1.23612 0.88825 0.94288 0.88849 1.66850 1.34958 0.96201 1.22517 1.19759 0.92232 0.87951 0.95902 1.47525 1.22739 1.02286 1.46697 0.67939 1.81676 0.92781 1.15609 1.06742 1.74888 1.18689 0.99937 1.15466 1.20470 0.98064 0.93810 1.08616 1.21067 0.97520 0.86412 0.89766 1.22106 0.78591 1.01285 0.99390 1.22416 1.01601 0.97798 0.96633 1.20431 0.91114 0.91334 0.90733 0.93666 1.42561 1.18090 1.64271 1.11460 1.19511 0.94243 1.25151 0.96591 0.90902 1.25276 1.01322 1.03242 0.96240 1.69776 1.39285 1.49827 1.02734 0.85385 0.81444 0.77475 0.76894 1.21852 1.23228 1.20012 0.91926 0.92427 0.92867 0.92191 0.93492 0.92344 0.88998 0.78572 0.81025 0.88351 0.90999 0.91278 0.90870 0.79049 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.67 71.98 0.70 -2.78 16 2 C -0.11 -3.05 5.19 30.59 0.16 -2.89 16 3 C -0.09 -2.61 2.14 -10.72 -0.02 -2.64 16 4 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 5 C 0.12 3.64 5.03 86.36 0.43 4.08 16 6 N -0.59 -15.77 2.97 -822.48 -2.44 -18.22 16 7 C 0.57 15.26 7.38 86.75 0.64 15.90 16 8 O -0.56 -18.18 16.30 -3.92 -0.06 -18.25 16 9 C -0.20 -4.37 5.27 -20.03 -0.11 -4.48 16 10 C 0.22 4.45 8.52 85.23 0.73 5.18 16 11 N -0.49 -10.38 10.37 -191.99 -1.99 -12.37 16 12 C 0.29 5.93 8.49 134.01 1.14 7.07 16 13 N -0.46 -7.59 7.53 -55.37 -0.42 -8.01 16 14 H 0.47 4.28 8.96 -213.26 -1.91 2.37 16 15 N 0.02 0.30 13.82 37.02 0.51 0.81 16 16 N -0.21 -4.77 12.40 -52.15 -0.65 -5.42 16 17 C -0.08 -1.84 7.27 39.63 0.29 -1.56 16 18 C 0.08 1.73 9.80 22.96 0.22 1.95 16 19 C 0.11 2.80 4.53 86.36 0.39 3.19 16 20 C -0.14 -3.98 5.78 30.67 0.18 -3.81 16 21 C 0.17 5.67 2.53 45.02 0.11 5.78 16 22 H 0.05 1.56 8.08 -2.39 -0.02 1.54 16 23 N -0.72 -30.62 3.72 -322.80 -1.20 -31.82 16 24 C -0.22 -10.91 9.93 84.03 0.83 -10.08 16 25 H 0.07 3.47 7.83 -2.91 -0.02 3.45 16 26 C -0.07 -3.59 5.50 84.86 0.47 -3.13 16 27 N -0.96 -54.54 13.06 21.65 0.28 -54.26 16 28 Si 0.96 43.48 29.55 68.60 2.03 45.50 16 29 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 30 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 31 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 32 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.05 1.27 6.70 -2.39 -0.02 1.25 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.05 1.65 7.69 -2.38 -0.02 1.63 16 37 H 0.06 1.98 6.64 -2.39 -0.02 1.96 16 38 H 0.09 2.68 5.72 -2.39 -0.01 2.66 16 39 H 0.20 3.70 6.12 -2.91 -0.02 3.68 16 40 H 0.17 3.17 8.05 -2.91 -0.02 3.15 16 41 H 0.10 2.06 4.51 -2.38 -0.01 2.04 16 42 H 0.07 2.22 7.66 -2.39 -0.02 2.20 16 43 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.38 17.36 5.94 -92.71 -0.55 16.81 16 46 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 Total: -1.00 -62.35 369.12 0.82 -61.53 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: -1.41 Total: 28.71 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 6.16 Total: 11.79 kcal Atomic # 7 Polarization: -123.38 SS G_CDS: -5.90 Total: -129.29 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.06 Total: -18.25 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -62.35 0.82 -61.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037861239.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.313 kcal (2) G-P(sol) polarization free energy of solvation -62.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds