Wall clock time and date at job start Wed Apr 1 2020 02:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53005 * 109.47072 * 2 1 4 4 H 1.09001 * 109.52403 * 305.08109 * 3 2 1 5 5 C 1.53188 * 109.48632 * 65.16889 * 3 2 1 6 6 N 1.46924 * 108.76567 * 174.60065 * 5 3 2 7 7 C 1.34785 * 120.63072 * 126.40274 * 6 5 3 8 8 O 1.21566 * 119.99810 * 354.16021 * 7 6 5 9 9 C 1.47724 * 119.99765 * 174.15267 * 7 6 5 10 10 C 1.40119 * 120.34591 * 139.33684 * 9 7 6 11 11 N 1.31254 * 121.14561 * 179.97438 * 10 9 7 12 12 C 1.32715 * 121.80120 * 0.02562 * 11 10 9 13 13 N 1.37124 * 133.40038 * 179.97438 * 12 11 10 14 14 H 0.97002 * 126.59389 * 359.95942 * 13 12 11 15 15 N 1.40186 * 106.81652 * 180.02562 * 13 12 11 16 16 N 1.28663 * 109.50986 * 359.97438 * 15 13 12 17 17 C 1.35324 * 110.00398 * 0.02562 * 16 15 13 18 18 C 1.39428 * 120.35551 * 319.06242 * 9 7 6 19 19 C 1.46928 * 118.73967 * 306.38572 * 6 5 3 20 20 C 1.53192 * 108.77528 * 53.60478 * 19 6 5 21 21 C 1.53031 * 109.31500 * 305.36689 * 20 19 6 22 22 H 1.09000 * 109.46158 * 301.36127 * 21 20 19 23 23 N 1.46494 * 109.46270 * 181.38430 * 21 20 19 24 24 C 1.36938 * 120.00198 * 84.97103 * 23 21 20 25 25 H 1.08000 * 119.99453 * 0.02562 * 24 23 21 26 26 C 1.38805 * 120.00366 * 180.02562 * 24 23 21 27 27 N 1.31625 * 120.00097 * 0.02562 * 26 24 23 28 28 Si 1.86800 * 120.00168 * 180.02562 * 26 24 23 29 29 H 1.48493 * 109.47447 * 59.99792 * 28 26 24 30 30 H 1.48502 * 109.46955 * 299.99733 * 28 26 24 31 31 H 1.48498 * 109.47458 * 180.02562 * 28 26 24 32 32 H 1.09004 * 109.47735 * 60.00254 * 1 2 3 33 33 H 1.09004 * 109.47585 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47644 * 300.00052 * 1 2 3 35 35 H 1.08996 * 109.47389 * 240.00132 * 2 1 3 36 36 H 1.09004 * 109.47735 * 119.99746 * 2 1 3 37 37 H 1.08996 * 109.60054 * 54.81312 * 5 3 2 38 38 H 1.09006 * 109.58720 * 294.38218 * 5 3 2 39 39 H 1.07999 * 119.42600 * 359.96012 * 10 9 7 40 40 H 1.08001 * 120.94964 * 0.02562 * 18 9 7 41 41 H 1.08994 * 109.58587 * 293.82045 * 19 6 5 42 42 H 1.09002 * 109.58587 * 173.39336 * 19 6 5 43 43 H 1.08998 * 109.49846 * 185.41483 * 20 19 6 44 44 H 1.09005 * 109.52363 * 65.33444 * 20 19 6 45 45 H 0.97001 * 120.00501 * 264.97036 * 23 21 20 46 46 H 0.96994 * 119.99873 * 359.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9828 -0.8407 5 6 1.6384 2.1265 1.3106 6 7 2.2447 3.4642 1.3507 7 6 1.4851 4.5562 1.5681 8 8 0.2753 4.4530 1.6275 9 6 2.1228 5.8783 1.7344 10 6 1.5545 7.0171 1.1482 11 7 2.1076 8.1994 1.2863 12 6 3.2242 8.3722 1.9824 13 7 3.9913 9.4704 2.2755 14 1 3.8253 10.3836 1.9938 15 7 5.0626 9.0193 3.0592 16 7 4.9619 7.7486 3.2340 17 6 3.8599 7.2804 2.6035 18 6 3.2933 6.0071 2.4809 19 6 3.6948 3.5890 1.1496 20 6 4.0732 2.8883 -0.1591 21 6 3.5652 1.4452 -0.1258 22 1 4.0008 0.9264 0.7282 23 7 3.9541 0.7622 -1.3621 24 6 5.1920 0.1860 -1.4657 25 1 5.8814 0.2347 -0.6358 26 6 5.5607 -0.4607 -2.6373 27 7 4.7206 -0.5197 -3.6489 28 14 7.2491 -1.2473 -2.7783 29 1 7.3989 -2.2893 -1.7310 30 1 8.2955 -0.2093 -2.5970 31 1 7.3956 -1.8680 -4.1194 32 1 -0.3635 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 1.9966 1.5376 2.1550 38 1 0.5531 2.2156 1.3588 39 1 0.6458 6.9203 0.5727 40 1 3.7519 5.1478 2.9476 41 1 4.2207 3.1193 1.9808 42 1 3.9663 4.6430 1.0915 43 1 5.1573 2.8898 -0.2723 44 1 3.6190 3.4146 -0.9986 45 1 3.3347 0.7180 -2.1073 46 1 3.8438 -0.1116 -3.5755 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037861240.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:13 Heat of formation + Delta-G solvation = 104.819057 kcal Electronic energy + Delta-G solvation = -30260.071647 eV Core-core repulsion = 26187.259960 eV Total energy + Delta-G solvation = -4072.811687 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.82978 -40.65640 -38.90554 -37.79964 -35.23913 -34.46521 -33.97323 -32.27858 -31.87552 -31.11894 -29.52813 -28.61866 -25.74293 -25.34529 -24.10699 -23.99136 -23.06319 -22.81530 -21.07089 -20.50211 -19.58672 -19.28130 -18.18035 -17.43079 -17.32898 -16.72073 -16.44289 -16.22858 -15.31118 -15.00825 -14.72227 -14.22998 -14.18161 -13.77114 -13.65464 -13.52859 -13.47154 -13.37802 -13.22225 -12.97545 -12.85887 -12.43716 -12.28787 -12.18539 -11.82053 -11.68344 -11.44199 -11.00811 -10.79567 -10.65552 -10.50536 -10.36302 -10.31071 -10.03956 -9.92355 -9.91818 -9.75128 -9.44463 -9.21553 -8.95125 -8.67806 -7.08686 -6.14035 -3.14794 -0.27383 0.24963 1.55246 1.61581 2.38000 2.72752 3.10272 3.38929 3.48829 3.51489 3.69185 3.72698 3.81235 4.16060 4.18353 4.43100 4.62028 4.83014 4.90346 5.05862 5.06879 5.12621 5.18940 5.25707 5.30950 5.40140 5.51464 5.53387 5.59740 5.65570 5.74985 5.85659 5.97531 6.01009 6.10532 6.19071 6.21614 6.22963 6.31888 6.38394 6.51274 6.68192 6.78435 6.90479 7.01501 7.23190 7.31138 7.75655 7.90223 8.71208 9.17216 10.03692 10.18569 11.33970 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011629 B = 0.003018 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.115968 B = 9275.023597 C =11043.684228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.070 0.930 5 C 0.120 3.880 6 N -0.596 5.596 7 C 0.569 3.431 8 O -0.533 6.533 9 C -0.195 4.195 10 C 0.234 3.766 11 N -0.489 5.489 12 C 0.293 3.707 13 N -0.484 5.484 14 H 0.454 0.546 15 N 0.019 4.981 16 N -0.191 5.191 17 C -0.074 4.074 18 C 0.055 3.945 19 C 0.097 3.903 20 C -0.151 4.151 21 C 0.189 3.811 22 H 0.050 0.950 23 N -0.731 5.731 24 C -0.331 4.331 25 H 0.064 0.936 26 C -0.043 4.043 27 N -0.943 5.943 28 Si 1.077 2.923 29 H -0.295 1.295 30 H -0.296 1.296 31 H -0.285 1.285 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.186 0.814 40 H 0.162 0.838 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.059 0.941 45 H 0.367 0.633 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.073 15.255 13.121 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.328 5.328 7 C 0.356 3.644 8 O -0.411 6.411 9 C -0.204 4.204 10 C 0.061 3.939 11 N -0.203 5.203 12 C 0.048 3.952 13 N -0.209 5.209 14 H 0.302 0.698 15 N 0.036 4.964 16 N -0.072 5.072 17 C -0.199 4.199 18 C 0.024 3.976 19 C -0.026 4.026 20 C -0.192 4.192 21 C 0.078 3.922 22 H 0.068 0.932 23 N -0.372 5.372 24 C -0.462 4.462 25 H 0.082 0.918 26 C -0.241 4.241 27 N -0.588 5.588 28 Si 0.908 3.092 29 H -0.223 1.223 30 H -0.223 1.223 31 H -0.211 1.211 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.203 0.797 40 H 0.180 0.820 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.201 0.799 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.525 15.449 12.728 20.522 hybrid contribution -1.528 0.704 0.424 1.735 sum -6.053 16.154 13.152 21.693 Atomic orbital electron populations 1.21848 0.96588 1.01195 1.01410 1.21436 0.94527 0.95539 1.03403 1.21813 0.97671 0.96358 0.96783 0.91152 1.21832 0.99640 0.80714 0.98042 1.48089 1.08711 1.06692 1.69278 1.17746 0.86421 0.83024 0.77225 1.90807 1.13191 1.85594 1.51471 1.20802 0.97972 0.96607 1.05022 1.23032 0.96173 0.83978 0.90764 1.66790 1.08623 1.26408 1.18439 1.19622 0.92245 0.87878 0.95447 1.47538 1.20039 1.10035 1.43319 0.69763 1.81745 1.03404 1.04886 1.06344 1.74909 1.14683 1.02490 1.15139 1.20343 0.97302 0.95930 1.06335 1.21277 0.90341 0.94936 0.91013 1.22215 0.79248 1.01363 0.99812 1.22679 1.02470 0.99210 0.94862 1.20123 0.90646 0.90382 0.91007 0.93192 1.42407 1.16518 1.65615 1.12700 1.19999 0.92445 1.32152 1.01601 0.91800 1.25716 1.05772 1.00197 0.92388 1.70889 1.08328 1.47493 1.32076 0.83276 0.74219 0.75884 0.75803 1.22264 1.22324 1.21098 0.92967 0.93062 0.93046 0.90208 0.92267 0.91132 0.88703 0.79685 0.82032 0.90757 0.90309 0.90339 0.92232 0.79950 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.67 37.15 0.36 -1.58 16 2 C -0.11 -1.66 5.31 -26.73 -0.14 -1.80 16 3 C -0.11 -1.59 1.92 -90.50 -0.17 -1.76 16 4 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 5 C 0.12 1.52 5.34 -3.71 -0.02 1.50 16 6 N -0.60 -7.24 2.97 -173.93 -0.52 -7.76 16 7 C 0.57 7.03 7.32 -12.38 -0.09 6.93 16 8 O -0.53 -7.97 16.36 5.31 0.09 -7.89 16 9 C -0.20 -2.01 5.11 -104.87 -0.54 -2.54 16 10 C 0.23 2.26 10.79 -17.09 -0.18 2.07 16 11 N -0.49 -4.98 10.37 -12.03 -0.12 -5.10 16 12 C 0.29 3.00 8.49 -155.92 -1.32 1.68 16 13 N -0.48 -4.04 7.53 31.15 0.23 -3.81 16 14 H 0.45 2.17 8.96 -182.53 -1.64 0.54 16 15 N 0.02 0.20 13.82 60.35 0.83 1.03 16 16 N -0.19 -2.18 12.40 32.16 0.40 -1.79 16 17 C -0.07 -0.79 7.27 -84.74 -0.62 -1.41 16 18 C 0.06 0.53 7.55 -38.52 -0.29 0.24 16 19 C 0.10 1.12 4.94 -3.71 -0.02 1.10 16 20 C -0.15 -2.36 5.66 -26.62 -0.15 -2.51 16 21 C 0.19 3.33 2.19 -67.89 -0.15 3.18 16 22 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 23 N -0.73 -16.72 4.33 -53.39 -0.23 -16.95 16 24 C -0.33 -8.70 9.93 -15.06 -0.15 -8.85 16 25 H 0.06 1.66 7.83 -52.49 -0.41 1.24 16 26 C -0.04 -1.19 5.50 -17.43 -0.10 -1.29 16 27 N -0.94 -28.16 13.70 55.49 0.76 -27.40 16 28 Si 1.08 25.10 29.92 -169.99 -5.09 20.01 16 29 H -0.30 -6.58 7.11 56.52 0.40 -6.18 16 30 H -0.30 -6.60 7.11 56.52 0.40 -6.20 16 31 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.59 6.70 -51.93 -0.35 0.24 16 35 H 0.08 1.45 7.22 -51.93 -0.37 1.08 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.09 1.24 5.72 -51.93 -0.30 0.95 16 39 H 0.19 1.46 8.06 -52.49 -0.42 1.04 16 40 H 0.16 1.28 6.72 -52.49 -0.35 0.93 16 41 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 42 H 0.08 0.81 4.78 -51.93 -0.25 0.56 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.37 8.87 6.34 -40.82 -0.26 8.61 16 46 H 0.26 7.49 6.77 -40.82 -0.28 7.21 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -32.32 372.01 -8.84 -41.16 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -7.22 Total: 7.91 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -3.58 Total: -5.03 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: 1.35 Total: -61.77 kcal Atomic # 8 Polarization: -7.97 SS G_CDS: 0.09 Total: -7.89 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.09 Total: 20.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.32 -8.84 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037861240.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.981 kcal (2) G-P(sol) polarization free energy of solvation -32.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds