Wall clock time and date at job start Wed Apr 1 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46979 * 2 1 4 4 H 1.09000 * 109.51752 * 54.92445 * 3 2 1 5 5 C 1.53190 * 109.49649 * 294.84093 * 3 2 1 6 6 N 1.46924 * 108.77172 * 185.40934 * 5 3 2 7 7 C 1.34774 * 120.63174 * 233.58961 * 6 5 3 8 8 O 1.21565 * 120.00141 * 355.94362 * 7 6 5 9 9 C 1.47725 * 120.00166 * 175.94891 * 7 6 5 10 10 C 1.40120 * 120.35083 * 50.61505 * 9 7 6 11 11 N 1.31261 * 121.14819 * 180.02562 * 10 9 7 12 12 C 1.32720 * 121.80219 * 359.97438 * 11 10 9 13 13 N 1.37112 * 133.40508 * 180.02562 * 12 11 10 14 14 H 0.97004 * 126.59109 * 0.02562 * 13 12 11 15 15 N 1.40190 * 106.81837 * 179.97438 * 13 12 11 16 16 N 1.28672 * 109.51191 * 0.02562 * 15 13 12 17 17 C 1.35329 * 109.99475 * 359.97438 * 16 15 13 18 18 C 1.39434 * 120.35184 * 230.34640 * 9 7 6 19 19 C 1.46924 * 118.73839 * 53.61172 * 6 5 3 20 20 C 1.53187 * 108.77676 * 306.39157 * 19 6 5 21 21 C 1.53037 * 109.31576 * 54.63256 * 20 19 6 22 22 H 1.09003 * 109.44659 * 58.64494 * 21 20 19 23 23 N 1.46495 * 109.46149 * 178.61724 * 21 20 19 24 24 C 1.36933 * 120.00082 * 275.06573 * 23 21 20 25 25 H 1.08007 * 120.00212 * 0.02562 * 24 23 21 26 26 C 1.38819 * 120.00352 * 180.02562 * 24 23 21 27 27 N 1.31614 * 119.99615 * 0.02562 * 26 24 23 28 28 Si 1.86801 * 120.00145 * 180.02562 * 26 24 23 29 29 H 1.48501 * 109.47050 * 269.99941 * 28 26 24 30 30 H 1.48504 * 109.46902 * 29.99905 * 28 26 24 31 31 H 1.48495 * 109.47026 * 150.00058 * 28 26 24 32 32 H 1.09001 * 109.47031 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47108 * 299.99193 * 1 2 3 34 34 H 1.08994 * 109.47550 * 59.99637 * 1 2 3 35 35 H 1.09004 * 109.47108 * 240.00807 * 2 1 3 36 36 H 1.08994 * 109.47550 * 120.00363 * 2 1 3 37 37 H 1.08993 * 109.59413 * 305.19709 * 5 3 2 38 38 H 1.09004 * 109.58833 * 65.63075 * 5 3 2 39 39 H 1.08002 * 119.42761 * 0.02562 * 10 9 7 40 40 H 1.07997 * 120.94958 * 359.96639 * 18 9 7 41 41 H 1.09007 * 109.58893 * 66.17833 * 19 6 5 42 42 H 1.09000 * 109.58657 * 186.45683 * 19 6 5 43 43 H 1.09010 * 109.49529 * 294.67857 * 20 19 6 44 44 H 1.09004 * 109.49795 * 174.58719 * 20 19 6 45 45 H 0.97000 * 119.99947 * 95.06955 * 23 21 20 46 46 H 0.97001 * 119.99884 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9827 0.8408 5 6 1.6384 2.1268 -1.3105 6 7 2.2449 3.4644 -1.3506 7 6 1.4855 4.5565 -1.5679 8 8 0.2997 4.4347 -1.8062 9 6 2.0942 5.9015 -1.5166 10 6 3.2564 6.1811 -2.2477 11 7 3.8106 7.3705 -2.2132 12 6 3.3002 8.3592 -1.4896 13 7 3.6701 9.6631 -1.2822 14 1 4.4368 10.1150 -1.6680 15 7 2.7266 10.2179 -0.4062 16 7 1.8492 9.3280 -0.0998 17 6 2.1340 8.1625 -0.7258 18 6 1.5151 6.9080 -0.7446 19 6 3.6950 3.5889 -1.1498 20 6 4.0735 2.8882 0.1588 21 6 3.5652 1.4451 0.1257 22 1 4.0007 0.9264 -0.7284 23 7 3.9542 0.7621 1.3619 24 6 5.1923 0.1864 1.4656 25 1 5.8822 0.2362 0.6361 26 6 5.5608 -0.4613 2.6368 27 7 4.7199 -0.5224 3.6475 28 14 7.2500 -1.2460 2.7785 29 1 7.1818 -2.6550 2.3142 30 1 8.2170 -0.4943 1.9387 31 1 7.6941 -1.2127 4.1951 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8901 34 1 -0.3634 0.5138 -0.8899 35 1 1.8933 -0.5137 -0.8901 36 1 1.8934 -0.5138 0.8899 37 1 1.9963 1.5379 -2.1549 38 1 0.5531 2.2162 -1.3584 39 1 3.7040 5.4045 -2.8501 40 1 0.6167 6.7232 -0.1744 41 1 4.2207 3.1192 -1.9811 42 1 3.9671 4.6430 -1.0943 43 1 3.6192 3.4149 0.9981 44 1 5.1577 2.8895 0.2718 45 1 3.3347 0.7176 2.1070 46 1 4.9775 -0.9747 4.4660 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037861242.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:19 Heat of formation + Delta-G solvation = 103.806736 kcal Electronic energy + Delta-G solvation = -30181.390132 eV Core-core repulsion = 26108.534547 eV Total energy + Delta-G solvation = -4072.855585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.78134 -40.62314 -38.82812 -37.79302 -34.91043 -34.42663 -33.84371 -32.14387 -31.82117 -31.22385 -29.60531 -28.69329 -25.82335 -25.32898 -24.19231 -23.84157 -23.15800 -22.68091 -20.94387 -20.40036 -19.49583 -19.12739 -18.58416 -17.18876 -17.07880 -16.78356 -16.44085 -16.05256 -15.17584 -15.09319 -14.58947 -14.11029 -14.06343 -13.80767 -13.67372 -13.47273 -13.38527 -13.24837 -13.11538 -12.90044 -12.74923 -12.38429 -12.17964 -12.01464 -11.81837 -11.70304 -11.36407 -10.99242 -10.90977 -10.77806 -10.55203 -10.36315 -10.25873 -10.20891 -9.87620 -9.78873 -9.73426 -9.66309 -9.38633 -8.95423 -8.64244 -7.02287 -5.82703 -3.11675 -0.22342 0.32760 1.58535 1.64892 2.37732 2.74683 3.13315 3.38642 3.43642 3.44166 3.45955 3.78743 3.86453 4.15782 4.19435 4.46338 4.52765 4.87111 4.95103 5.12816 5.14626 5.23379 5.24490 5.34482 5.37426 5.45489 5.54721 5.61022 5.61376 5.67228 5.81710 5.92322 6.04494 6.08294 6.22964 6.23593 6.27965 6.31250 6.39634 6.46084 6.59681 6.75315 6.89583 6.97862 7.02259 7.27527 7.34597 7.63551 7.94768 8.35309 9.47024 10.03836 10.38366 11.39579 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.002933 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.461414 B = 9542.698964 C =11033.827000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.105 4.105 4 H 0.071 0.929 5 C 0.120 3.880 6 N -0.595 5.595 7 C 0.569 3.431 8 O -0.533 6.533 9 C -0.194 4.194 10 C 0.213 3.787 11 N -0.487 5.487 12 C 0.291 3.709 13 N -0.483 5.483 14 H 0.454 0.546 15 N 0.018 4.982 16 N -0.192 5.192 17 C -0.070 4.070 18 C 0.072 3.928 19 C 0.097 3.903 20 C -0.152 4.152 21 C 0.184 3.816 22 H 0.049 0.951 23 N -0.720 5.720 24 C -0.240 4.240 25 H 0.070 0.930 26 C -0.011 4.011 27 N -0.931 5.931 28 Si 0.904 3.096 29 H -0.290 1.290 30 H -0.282 1.282 31 H -0.292 1.292 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.184 0.816 40 H 0.161 0.839 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 14.191 -13.303 19.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.002 4.002 6 N -0.326 5.326 7 C 0.355 3.645 8 O -0.410 6.410 9 C -0.202 4.202 10 C 0.040 3.960 11 N -0.201 5.201 12 C 0.046 3.954 13 N -0.208 5.208 14 H 0.302 0.698 15 N 0.035 4.965 16 N -0.073 5.073 17 C -0.195 4.195 18 C 0.041 3.959 19 C -0.026 4.026 20 C -0.193 4.193 21 C 0.073 3.927 22 H 0.067 0.933 23 N -0.360 5.360 24 C -0.371 4.371 25 H 0.088 0.912 26 C -0.207 4.207 27 N -0.579 5.579 28 Si 0.735 3.265 29 H -0.217 1.217 30 H -0.208 1.208 31 H -0.219 1.219 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.201 0.799 40 H 0.179 0.821 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.534 15.544 -13.079 20.814 hybrid contribution 1.122 -1.032 0.209 1.539 sum -3.411 14.512 -12.870 19.694 Atomic orbital electron populations 1.21850 0.96761 1.01128 1.01321 1.21450 0.94401 0.95544 1.03573 1.21802 0.97721 0.96401 0.96611 0.91080 1.21845 0.99534 0.80697 0.98155 1.48096 1.08669 1.06652 1.69231 1.17740 0.86017 0.83282 0.77470 1.90813 1.15038 1.86276 1.48862 1.20737 0.99389 0.96148 1.03974 1.23175 0.88864 0.91666 0.92319 1.66723 1.33069 0.99331 1.20938 1.19565 0.92823 0.87720 0.95307 1.47529 1.26451 1.07185 1.39654 0.69777 1.81743 0.94887 1.16818 1.03092 1.74906 1.17349 0.98310 1.16726 1.20339 0.99154 0.95698 1.04356 1.20936 0.96501 0.86873 0.91588 1.22178 0.79225 1.01205 0.99994 1.22704 1.02412 0.99349 0.94852 1.20186 0.90745 0.90419 0.91346 0.93275 1.42403 1.16476 1.64398 1.12704 1.19198 0.91783 1.27491 0.98631 0.91220 1.24727 0.98106 1.01467 0.96435 1.69653 1.35224 1.48216 1.04776 0.86240 0.84038 0.79346 0.76832 1.21738 1.20804 1.21855 0.93137 0.92963 0.93177 0.92374 0.89727 0.91130 0.88849 0.79943 0.82101 0.90632 0.90504 0.92117 0.90400 0.78167 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.67 37.16 0.36 -1.59 16 2 C -0.11 -1.66 5.31 -26.73 -0.14 -1.80 16 3 C -0.11 -1.55 1.92 -90.50 -0.17 -1.73 16 4 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 5 C 0.12 1.50 5.32 -3.71 -0.02 1.48 16 6 N -0.59 -7.06 2.97 -173.93 -0.52 -7.57 16 7 C 0.57 7.06 7.25 -12.38 -0.09 6.97 16 8 O -0.53 -8.20 16.47 5.31 0.09 -8.11 16 9 C -0.19 -2.03 5.02 -104.87 -0.53 -2.56 16 10 C 0.21 1.91 8.51 -17.09 -0.15 1.76 16 11 N -0.49 -4.82 10.37 -12.03 -0.12 -4.95 16 12 C 0.29 3.03 8.49 -155.93 -1.32 1.71 16 13 N -0.48 -4.14 7.52 31.15 0.23 -3.91 16 14 H 0.45 2.25 8.96 -182.53 -1.64 0.61 16 15 N 0.02 0.19 13.82 60.35 0.83 1.02 16 16 N -0.19 -2.31 12.40 32.17 0.40 -1.91 16 17 C -0.07 -0.79 7.27 -84.74 -0.62 -1.41 16 18 C 0.07 0.77 9.93 -38.51 -0.38 0.38 16 19 C 0.10 1.06 5.38 -3.71 -0.02 1.04 16 20 C -0.15 -2.28 5.66 -26.62 -0.15 -2.43 16 21 C 0.18 3.14 2.19 -67.89 -0.15 3.00 16 22 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 23 N -0.72 -16.26 4.33 -53.39 -0.23 -16.49 16 24 C -0.24 -6.14 9.93 -15.06 -0.15 -6.29 16 25 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 26 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 27 N -0.93 -26.89 13.06 55.49 0.72 -26.16 16 28 Si 0.90 21.45 29.55 -169.99 -5.02 16.43 16 29 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 30 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 31 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.05 0.58 6.70 -51.93 -0.35 0.23 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.54 7.22 -51.93 -0.37 1.17 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 1.22 5.75 -51.93 -0.30 0.92 16 39 H 0.18 1.15 7.03 -52.49 -0.37 0.78 16 40 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 41 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.08 0.73 4.52 -51.93 -0.23 0.49 16 43 H 0.06 0.99 8.14 -51.92 -0.42 0.57 16 44 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.38 9.48 7.51 -40.82 -0.31 9.18 16 46 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -31.41 374.28 -8.94 -40.35 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.34 Total: 7.53 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -3.63 Total: -1.87 kcal Atomic # 7 Polarization: -61.29 SS G_CDS: 1.32 Total: -59.97 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.41 -8.94 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037861242.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.158 kcal (2) G-P(sol) polarization free energy of solvation -31.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds