Wall clock time and date at job start Wed Apr 1 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47074 * 2 1 4 4 H 1.09007 * 109.49886 * 305.06359 * 3 2 1 5 5 C 1.53188 * 109.52706 * 65.14455 * 3 2 1 6 6 N 1.46922 * 108.77825 * 174.59883 * 5 3 2 7 7 C 1.34782 * 120.63035 * 126.41480 * 6 5 3 8 8 O 1.21621 * 119.99720 * 354.14623 * 7 6 5 9 9 C 1.47309 * 119.99952 * 174.14224 * 7 6 5 10 10 C 1.39004 * 120.90621 * 306.37461 * 9 7 6 11 11 C 1.39723 * 119.29062 * 179.79871 * 10 9 7 12 12 C 1.35254 * 121.08022 * 0.47144 * 11 10 9 13 13 N 1.35714 * 121.57307 * 359.78458 * 12 11 10 14 14 N 1.40204 * 134.08872 * 179.97438 * 13 12 11 15 15 N 1.29016 * 106.96220 * 180.02562 * 14 13 12 16 16 N 1.28591 * 110.78652 * 359.97438 * 15 14 13 17 17 C 1.32049 * 110.21362 * 0.02562 * 16 15 14 18 18 C 1.46932 * 118.74008 * 306.39562 * 6 5 3 19 19 C 1.53192 * 108.77191 * 53.60794 * 18 6 5 20 20 C 1.53039 * 109.49618 * 185.00021 * 3 2 1 21 21 H 1.08996 * 109.46281 * 298.66230 * 20 3 2 22 22 N 1.46499 * 109.45851 * 58.63261 * 20 3 2 23 23 C 1.36939 * 120.00145 * 205.00029 * 22 20 3 24 24 H 1.08008 * 119.99858 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00400 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99844 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00219 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47135 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47068 * 239.99716 * 27 25 23 30 30 H 1.48502 * 109.47641 * 119.99673 * 27 25 23 31 31 H 1.09007 * 109.47523 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47387 * 299.99992 * 1 2 3 33 33 H 1.09000 * 109.47316 * 59.99999 * 1 2 3 34 34 H 1.09003 * 109.46676 * 239.99805 * 2 1 3 35 35 H 1.08996 * 109.46718 * 120.00411 * 2 1 3 36 36 H 1.09000 * 109.58700 * 294.39601 * 5 3 2 37 37 H 1.09010 * 109.58486 * 54.67156 * 5 3 2 38 38 H 1.08003 * 120.35357 * 0.02847 * 10 9 7 39 39 H 1.08005 * 119.45705 * 180.21060 * 11 10 9 40 40 H 1.07999 * 119.21102 * 179.76170 * 12 11 10 41 41 H 1.08999 * 109.58264 * 173.39559 * 18 6 5 42 42 H 1.09001 * 109.58514 * 293.67712 * 18 6 5 43 43 H 1.09004 * 109.49280 * 185.41275 * 19 18 6 44 44 H 1.08992 * 109.50116 * 65.31963 * 19 18 6 45 45 H 0.97006 * 120.00385 * 24.99963 * 22 20 3 46 46 H 0.97003 * 120.00029 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 -0.8411 5 6 1.6385 2.1275 1.3100 6 7 2.2450 3.4651 1.3495 7 6 1.4857 4.5573 1.5664 8 8 0.2753 4.4544 1.6255 9 6 2.1218 5.8756 1.7318 10 6 3.1253 6.0710 2.6736 11 6 3.7085 7.3345 2.7991 12 6 3.3056 8.3692 2.0269 13 7 2.3260 8.2241 1.0989 14 7 1.7162 9.0904 0.1805 15 7 0.8318 8.4008 -0.4573 16 7 0.8147 7.1842 -0.0413 17 6 1.7105 7.0160 0.9142 18 6 3.6952 3.5894 1.1486 19 6 4.0735 2.8881 -0.1598 20 6 3.5652 1.4450 -0.1257 21 1 4.0008 0.9267 0.7284 22 7 3.9541 0.7613 -1.3617 23 6 5.1922 0.1855 -1.4652 24 1 5.8822 0.2358 -0.6358 25 6 5.5610 -0.4618 -2.6365 26 7 4.7203 -0.5226 -3.6475 27 14 7.2496 -1.2478 -2.7774 28 1 7.9987 -1.0418 -1.5118 29 1 7.9943 -0.6231 -3.9001 30 1 7.0987 -2.7029 -3.0325 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8899 36 1 0.5532 2.2167 1.3581 37 1 1.9943 1.5376 2.1548 38 1 3.4534 5.2539 3.2991 39 1 4.4908 7.4884 3.5277 40 1 3.7746 9.3340 2.1519 41 1 3.9669 4.6434 1.0901 42 1 4.2209 3.1223 1.9814 43 1 5.1577 2.8893 -0.2728 44 1 3.6192 3.4142 -0.9992 45 1 3.3346 0.7165 -2.1068 46 1 3.8433 -0.1147 -3.5742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037862004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:46 Heat of formation + Delta-G solvation = 130.600520 kcal Electronic energy + Delta-G solvation = -30592.324608 eV Core-core repulsion = 26520.630889 eV Total energy + Delta-G solvation = -4071.693719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.69460 -40.54331 -38.90985 -37.91109 -35.11074 -34.39495 -33.87608 -32.44304 -31.92893 -31.08466 -29.52579 -28.63911 -26.13804 -24.83736 -24.73537 -23.94676 -23.49807 -22.76617 -21.06344 -20.44207 -19.60015 -18.93465 -18.04908 -17.43236 -17.32197 -17.10897 -16.40243 -16.28246 -15.24574 -15.01005 -14.50789 -14.22831 -14.15639 -13.81813 -13.67315 -13.52644 -13.49037 -13.33191 -13.20701 -12.87713 -12.82887 -12.70715 -12.25417 -12.14915 -11.77600 -11.67875 -11.42187 -11.31862 -10.99784 -10.78084 -10.64439 -10.62697 -10.38730 -10.28909 -10.14187 -10.06652 -9.91682 -9.22335 -9.05880 -8.94222 -8.68236 -7.07921 -6.13773 -3.14609 -0.38292 0.06834 1.21523 1.79422 2.16371 2.50365 2.86120 3.15669 3.47439 3.50899 3.54182 3.62839 3.90695 3.98351 4.23061 4.59664 4.61398 4.79800 4.84567 4.89680 5.03442 5.07390 5.10833 5.15897 5.18434 5.30598 5.37156 5.41466 5.52761 5.54795 5.60277 5.76553 5.85261 5.85961 5.98598 6.02559 6.10949 6.22662 6.22893 6.33094 6.39961 6.53053 6.68189 6.80002 6.91270 7.19699 7.75904 7.89220 8.03407 8.71470 9.17776 10.04257 10.19494 11.34330 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012480 B = 0.003068 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.060127 B = 9124.923506 C =10030.144006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.108 4.108 4 H 0.071 0.929 5 C 0.121 3.879 6 N -0.595 5.595 7 C 0.568 3.432 8 O -0.514 6.514 9 C -0.086 4.086 10 C -0.024 4.024 11 C -0.139 4.139 12 C 0.122 3.878 13 N -0.306 5.306 14 N -0.106 5.106 15 N -0.005 5.005 16 N -0.302 5.302 17 C 0.269 3.731 18 C 0.102 3.898 19 C -0.152 4.152 20 C 0.190 3.810 21 H 0.050 0.950 22 N -0.731 5.731 23 C -0.332 4.332 24 H 0.065 0.935 25 C -0.043 4.043 26 N -0.943 5.943 27 Si 1.083 2.917 28 H -0.295 1.295 29 H -0.294 1.294 30 H -0.293 1.293 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.185 0.815 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.367 0.633 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.538 14.285 18.634 23.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.128 4.128 4 H 0.089 0.911 5 C -0.001 4.001 6 N -0.327 5.327 7 C 0.353 3.647 8 O -0.389 6.389 9 C -0.095 4.095 10 C -0.050 4.050 11 C -0.162 4.162 12 C -0.005 4.005 13 N -0.086 5.086 14 N -0.089 5.089 15 N 0.002 4.998 16 N -0.159 5.159 17 C 0.011 3.989 18 C -0.021 4.021 19 C -0.193 4.193 20 C 0.080 3.920 21 H 0.068 0.932 22 N -0.373 5.373 23 C -0.463 4.463 24 H 0.083 0.917 25 C -0.241 4.241 26 N -0.588 5.588 27 Si 0.915 3.085 28 H -0.222 1.222 29 H -0.221 1.221 30 H -0.220 1.220 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.184 0.816 39 H 0.193 0.807 40 H 0.202 0.798 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.201 0.799 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.867 14.214 16.644 21.904 hybrid contribution -0.387 0.799 1.376 1.637 sum -1.253 15.012 18.019 23.487 Atomic orbital electron populations 1.21854 0.96564 1.01178 1.01507 1.21428 0.94561 0.95452 1.03364 1.21821 0.97683 0.96398 0.96859 0.91090 1.21826 0.99718 0.80471 0.98070 1.48059 1.08701 1.06488 1.69483 1.17438 0.86556 0.82712 0.77979 1.90864 1.12960 1.85260 1.49839 1.20223 0.99256 0.92072 0.97948 1.21987 0.90295 0.98476 0.94248 1.21024 1.02728 0.91229 1.01265 1.21779 0.88359 1.02729 0.87673 1.48954 1.25217 1.09182 1.25237 1.82816 1.10426 1.12200 1.03471 1.78029 1.09245 0.97813 1.14670 1.75200 1.19426 1.09388 1.11903 1.23599 0.92196 0.87332 0.95811 1.22028 0.79134 1.01148 0.99775 1.22682 1.02368 0.99343 0.94927 1.20106 0.90635 0.90285 0.91007 0.93183 1.42429 1.16532 1.65572 1.12761 1.20053 0.92411 1.32184 1.01624 0.91737 1.25721 1.05784 1.00210 0.92411 1.70814 1.08361 1.47469 1.32165 0.83178 0.74305 0.76304 0.74747 1.22169 1.22107 1.22035 0.93046 0.93064 0.92896 0.90191 0.92279 0.88732 0.91033 0.81601 0.80658 0.79819 0.90850 0.90773 0.90341 0.92283 0.79920 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.67 37.16 0.36 -1.71 16 2 C -0.11 -1.70 5.31 -26.73 -0.14 -1.84 16 3 C -0.11 -1.68 1.92 -90.50 -0.17 -1.86 16 4 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 5 C 0.12 1.60 5.34 -3.71 -0.02 1.58 16 6 N -0.59 -7.53 2.97 -174.07 -0.52 -8.05 16 7 C 0.57 7.88 7.23 -12.57 -0.09 7.79 16 8 O -0.51 -9.01 16.52 5.26 0.09 -8.92 16 9 C -0.09 -0.95 4.78 -102.72 -0.49 -1.44 16 10 C -0.02 -0.14 7.89 -38.74 -0.31 -0.45 16 11 C -0.14 -0.44 9.92 -40.09 -0.40 -0.84 16 12 C 0.12 0.65 11.15 -16.90 -0.19 0.46 16 13 N -0.31 -3.34 3.94 -10.99 -0.04 -3.38 16 14 N -0.11 -1.44 13.99 60.35 0.84 -0.60 16 15 N 0.00 -0.07 13.36 60.35 0.81 0.73 16 16 N -0.30 -5.09 12.24 32.20 0.39 -4.70 16 17 C 0.27 3.64 8.03 -154.52 -1.24 2.40 16 18 C 0.10 1.14 5.60 -3.71 -0.02 1.12 16 19 C -0.15 -2.39 5.66 -26.61 -0.15 -2.54 16 20 C 0.19 3.39 2.19 -67.89 -0.15 3.24 16 21 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 22 N -0.73 -16.94 4.33 -53.39 -0.23 -17.17 16 23 C -0.33 -8.72 9.93 -15.06 -0.15 -8.87 16 24 H 0.06 1.67 7.83 -52.48 -0.41 1.25 16 25 C -0.04 -1.21 5.50 -17.43 -0.10 -1.30 16 26 N -0.94 -28.41 13.70 55.49 0.76 -27.65 16 27 Si 1.08 25.14 29.92 -169.99 -5.09 20.06 16 28 H -0.30 -6.37 7.11 56.52 0.40 -5.96 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 1.49 7.21 -51.93 -0.37 1.12 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.33 5.72 -51.93 -0.30 1.03 16 37 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.17 0.51 7.77 -52.48 -0.41 0.10 16 39 H 0.18 -0.20 8.06 -52.48 -0.42 -0.62 16 40 H 0.18 0.29 8.06 -52.49 -0.42 -0.13 16 41 H 0.07 0.68 5.38 -51.93 -0.28 0.40 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.37 9.08 6.34 -40.82 -0.26 8.82 16 46 H 0.26 7.64 6.77 -40.82 -0.28 7.36 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -36.36 375.48 -6.68 -43.04 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -6.10 Total: 5.24 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -3.26 Total: -4.25 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 2.01 Total: -60.82 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.09 Total: 20.06 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.36 -6.68 -43.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037862004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.642 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds