Wall clock time and date at job start Wed Apr 1 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47074 * 2 1 4 4 H 1.09007 * 109.49886 * 305.06359 * 3 2 1 5 5 C 1.53188 * 109.52706 * 65.14455 * 3 2 1 6 6 N 1.46922 * 108.77825 * 174.59883 * 5 3 2 7 7 C 1.34782 * 120.63035 * 126.41480 * 6 5 3 8 8 O 1.21621 * 119.99720 * 354.14623 * 7 6 5 9 9 C 1.47309 * 119.99952 * 174.14224 * 7 6 5 10 10 C 1.39004 * 120.90621 * 306.37461 * 9 7 6 11 11 C 1.39723 * 119.29062 * 179.79871 * 10 9 7 12 12 C 1.35254 * 121.08022 * 0.47144 * 11 10 9 13 13 N 1.35714 * 121.57307 * 359.78458 * 12 11 10 14 14 N 1.40204 * 134.08872 * 179.97438 * 13 12 11 15 15 N 1.29016 * 106.96220 * 180.02562 * 14 13 12 16 16 N 1.28591 * 110.78652 * 359.97438 * 15 14 13 17 17 C 1.32049 * 110.21362 * 0.02562 * 16 15 14 18 18 C 1.46932 * 118.74008 * 306.39562 * 6 5 3 19 19 C 1.53192 * 108.77191 * 53.60794 * 18 6 5 20 20 C 1.53039 * 109.49618 * 185.00021 * 3 2 1 21 21 H 1.08996 * 109.46281 * 298.66230 * 20 3 2 22 22 N 1.46499 * 109.45851 * 58.63261 * 20 3 2 23 23 C 1.36939 * 120.00145 * 205.00029 * 22 20 3 24 24 H 1.08008 * 119.99858 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00400 * 180.02562 * 23 22 20 26 26 N 1.31624 * 119.99844 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00219 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47135 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47068 * 239.99716 * 27 25 23 30 30 H 1.48502 * 109.47641 * 119.99673 * 27 25 23 31 31 H 1.09007 * 109.47523 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47387 * 299.99992 * 1 2 3 33 33 H 1.09000 * 109.47316 * 59.99999 * 1 2 3 34 34 H 1.09003 * 109.46676 * 239.99805 * 2 1 3 35 35 H 1.08996 * 109.46718 * 120.00411 * 2 1 3 36 36 H 1.09000 * 109.58700 * 294.39601 * 5 3 2 37 37 H 1.09010 * 109.58486 * 54.67156 * 5 3 2 38 38 H 1.08003 * 120.35357 * 0.02847 * 10 9 7 39 39 H 1.08005 * 119.45705 * 180.21060 * 11 10 9 40 40 H 1.07999 * 119.21102 * 179.76170 * 12 11 10 41 41 H 1.08999 * 109.58264 * 173.39559 * 18 6 5 42 42 H 1.09001 * 109.58514 * 293.67712 * 18 6 5 43 43 H 1.09004 * 109.49280 * 185.41275 * 19 18 6 44 44 H 1.08992 * 109.50116 * 65.31963 * 19 18 6 45 45 H 0.97006 * 120.00385 * 24.99963 * 22 20 3 46 46 H 0.97003 * 120.00029 * 0.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 -0.8411 5 6 1.6385 2.1275 1.3100 6 7 2.2450 3.4651 1.3495 7 6 1.4857 4.5573 1.5664 8 8 0.2753 4.4544 1.6255 9 6 2.1218 5.8756 1.7318 10 6 3.1253 6.0710 2.6736 11 6 3.7085 7.3345 2.7991 12 6 3.3056 8.3692 2.0269 13 7 2.3260 8.2241 1.0989 14 7 1.7162 9.0904 0.1805 15 7 0.8318 8.4008 -0.4573 16 7 0.8147 7.1842 -0.0413 17 6 1.7105 7.0160 0.9142 18 6 3.6952 3.5894 1.1486 19 6 4.0735 2.8881 -0.1598 20 6 3.5652 1.4450 -0.1257 21 1 4.0008 0.9267 0.7284 22 7 3.9541 0.7613 -1.3617 23 6 5.1922 0.1855 -1.4652 24 1 5.8822 0.2358 -0.6358 25 6 5.5610 -0.4618 -2.6365 26 7 4.7203 -0.5226 -3.6475 27 14 7.2496 -1.2478 -2.7774 28 1 7.9987 -1.0418 -1.5118 29 1 7.9943 -0.6231 -3.9001 30 1 7.0987 -2.7029 -3.0325 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8899 36 1 0.5532 2.2167 1.3581 37 1 1.9943 1.5376 2.1548 38 1 3.4534 5.2539 3.2991 39 1 4.4908 7.4884 3.5277 40 1 3.7746 9.3340 2.1519 41 1 3.9669 4.6434 1.0901 42 1 4.2209 3.1223 1.9814 43 1 5.1577 2.8893 -0.2728 44 1 3.6192 3.4142 -0.9992 45 1 3.3346 0.7165 -2.1068 46 1 3.8433 -0.1147 -3.5742 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037862004.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:46 Heat of formation + Delta-G solvation = 104.300078 kcal Electronic energy + Delta-G solvation = -30593.465081 eV Core-core repulsion = 26520.630889 eV Total energy + Delta-G solvation = -4072.834192 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.55304 -41.58107 -39.73109 -39.09507 -36.48357 -35.66909 -34.93187 -33.53629 -33.19901 -31.88917 -30.97388 -29.93039 -27.15645 -26.02286 -25.51791 -25.23463 -24.75431 -24.00137 -22.37115 -21.50999 -20.72830 -19.84218 -19.28011 -18.73915 -18.34159 -17.99890 -17.41373 -16.87584 -16.64370 -16.31954 -15.90416 -15.51897 -15.36308 -14.98867 -14.90422 -14.69948 -14.55001 -14.30699 -14.19216 -13.90008 -13.71962 -13.56952 -13.41521 -13.20566 -13.11661 -12.75496 -12.66168 -12.57605 -12.39216 -12.26920 -12.14483 -11.83489 -11.72497 -11.62488 -11.46189 -11.32462 -11.20520 -11.04397 -10.82238 -9.85372 -9.70733 -9.05328 -8.32129 -5.26191 -1.00566 -0.63399 0.50972 0.89733 1.31362 1.60585 1.69176 1.72114 1.82320 2.04586 2.43329 2.74512 2.75513 3.20528 3.46290 3.59408 3.61609 3.66872 3.69182 3.89530 3.95586 3.97094 4.12700 4.15086 4.25913 4.28818 4.36316 4.39825 4.54056 4.57606 4.63668 4.72673 4.74443 4.75715 4.81868 4.93827 4.95646 4.99016 5.08380 5.21548 5.29223 5.33985 5.38434 5.46731 5.56814 5.67440 6.19268 6.53336 6.89441 7.09157 7.14000 8.03586 8.19324 9.19464 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012480 B = 0.003068 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.060127 B = 9124.923506 C =10030.144006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.104 4.104 3 C -0.097 4.097 4 H 0.038 0.962 5 C 0.127 3.873 6 N -0.593 5.593 7 C 0.569 3.431 8 O -0.563 6.563 9 C -0.131 4.131 10 C 0.016 3.984 11 C -0.107 4.107 12 C 0.113 3.887 13 N -0.302 5.302 14 N -0.121 5.121 15 N -0.037 5.037 16 N -0.362 5.362 17 C 0.248 3.752 18 C 0.111 3.889 19 C -0.145 4.145 20 C 0.185 3.815 21 H 0.060 0.940 22 N -0.746 5.746 23 C -0.315 4.315 24 H 0.076 0.924 25 C -0.110 4.110 26 N -0.983 5.983 27 Si 1.129 2.871 28 H -0.263 1.263 29 H -0.299 1.299 30 H -0.297 1.297 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.208 0.792 39 H 0.241 0.759 40 H 0.227 0.773 41 H 0.099 0.901 42 H 0.117 0.883 43 H 0.072 0.928 44 H 0.026 0.974 45 H 0.353 0.647 46 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 15.322 23.764 28.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.118 4.118 4 H 0.057 0.943 5 C 0.005 3.995 6 N -0.325 5.325 7 C 0.356 3.644 8 O -0.442 6.442 9 C -0.141 4.141 10 C -0.009 4.009 11 C -0.129 4.129 12 C -0.013 4.013 13 N -0.081 5.081 14 N -0.104 5.104 15 N -0.030 5.030 16 N -0.221 5.221 17 C -0.008 4.008 18 C -0.011 4.011 19 C -0.186 4.186 20 C 0.077 3.923 21 H 0.078 0.922 22 N -0.386 5.386 23 C -0.446 4.446 24 H 0.093 0.907 25 C -0.301 4.301 26 N -0.632 5.632 27 Si 0.955 3.045 28 H -0.187 1.187 29 H -0.226 1.226 30 H -0.225 1.225 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.225 0.775 39 H 0.257 0.743 40 H 0.243 0.757 41 H 0.117 0.883 42 H 0.135 0.865 43 H 0.090 0.910 44 H 0.045 0.955 45 H 0.184 0.816 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.686 15.292 21.845 26.801 hybrid contribution -1.360 0.535 -0.011 1.461 sum 1.326 15.827 21.834 26.999 Atomic orbital electron populations 1.21795 0.95034 1.01975 1.01657 1.21334 0.95906 0.94987 1.02032 1.21676 0.96055 0.96531 0.97494 0.94318 1.21729 0.99487 0.81165 0.97127 1.48092 1.09328 1.06028 1.69014 1.17862 0.86012 0.83787 0.76722 1.90829 1.15265 1.86102 1.52032 1.20078 1.02823 0.89959 1.01223 1.22718 0.86527 1.00846 0.90812 1.21857 1.02050 0.88768 1.00217 1.23008 0.86574 1.05732 0.85997 1.49075 1.25791 1.07761 1.25513 1.82594 1.10656 1.12795 1.04396 1.77936 1.10757 0.98154 1.16142 1.75004 1.22326 1.10183 1.14602 1.23777 0.92237 0.88890 0.95867 1.22126 0.78276 1.02537 0.98131 1.22485 1.01439 0.97774 0.96910 1.20384 0.92007 0.91073 0.88854 0.92191 1.42689 1.15555 1.66234 1.14155 1.20424 0.93146 1.29876 1.01196 0.90658 1.27087 1.08568 1.01776 0.92674 1.70937 1.08491 1.50037 1.33771 0.82590 0.70975 0.75032 0.75876 1.18746 1.22618 1.22466 0.91909 0.91342 0.94314 0.94158 0.90750 0.89709 0.87901 0.77461 0.74277 0.75668 0.88299 0.86505 0.90988 0.95515 0.81569 0.94855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.02 9.67 71.98 0.70 -3.32 16 2 C -0.10 -3.28 5.31 30.59 0.16 -3.12 16 3 C -0.10 -3.10 1.92 -10.72 -0.02 -3.12 16 4 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 5 C 0.13 3.18 5.34 86.36 0.46 3.64 16 6 N -0.59 -13.76 2.97 -822.89 -2.45 -16.21 16 7 C 0.57 15.22 7.23 86.63 0.63 15.84 16 8 O -0.56 -20.30 16.52 -4.10 -0.07 -20.37 16 9 C -0.13 -2.60 4.78 -18.63 -0.09 -2.69 16 10 C 0.02 0.08 7.89 22.81 0.18 0.26 16 11 C -0.11 0.14 9.92 21.94 0.22 0.35 16 12 C 0.11 0.62 11.15 83.40 0.93 1.55 16 13 N -0.30 -6.12 3.94 -188.69 -0.74 -6.86 16 14 N -0.12 -3.36 13.99 37.02 0.52 -2.85 16 15 N -0.04 -1.29 13.36 37.02 0.49 -0.79 16 16 N -0.36 -13.12 12.24 -52.05 -0.64 -13.76 16 17 C 0.25 6.72 8.03 135.75 1.09 7.81 16 18 C 0.11 2.04 5.60 86.36 0.48 2.52 16 19 C -0.15 -4.41 5.66 30.67 0.17 -4.24 16 20 C 0.19 6.52 2.19 45.02 0.10 6.62 16 21 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 22 N -0.75 -35.54 4.33 -322.81 -1.40 -36.93 16 23 C -0.31 -16.57 9.93 84.03 0.83 -15.73 16 24 H 0.08 3.75 7.83 -2.91 -0.02 3.72 16 25 C -0.11 -6.24 5.50 84.86 0.47 -5.77 16 26 N -0.98 -61.64 13.70 21.65 0.30 -61.35 16 27 Si 1.13 50.62 29.92 68.60 2.05 52.67 16 28 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 29 H -0.30 -13.50 7.11 99.48 0.71 -12.80 16 30 H -0.30 -13.40 7.11 99.48 0.71 -12.70 16 31 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.07 1.64 6.70 -2.39 -0.02 1.62 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.04 1.58 7.21 -2.39 -0.02 1.57 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.08 2.35 5.72 -2.39 -0.01 2.34 16 37 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.21 -0.55 7.77 -2.91 -0.02 -0.58 16 39 H 0.24 -3.15 8.06 -2.91 -0.02 -3.18 16 40 H 0.23 -0.72 8.06 -2.91 -0.02 -0.74 16 41 H 0.10 1.35 5.38 -2.39 -0.01 1.34 16 42 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.35 18.64 6.34 -92.70 -0.59 18.06 16 46 H 0.24 15.27 6.77 -92.71 -0.63 14.64 16 Total: -1.00 -92.43 375.48 4.96 -87.47 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.58 Total: 18.36 kcal Atomic # 6 Polarization: -5.69 SS G_CDS: 6.31 Total: 0.62 kcal Atomic # 7 Polarization: -134.83 SS G_CDS: -3.92 Total: -138.74 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.07 Total: -20.37 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.05 Total: 52.67 kcal Total: -92.43 4.96 -87.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037862004.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.771 kcal (2) G-P(sol) polarization free energy of solvation -92.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds