Wall clock time and date at job start Wed Apr 1 2020 02:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46999 * 2 1 4 4 H 1.08995 * 109.52443 * 54.91916 * 3 2 1 5 5 C 1.53199 * 109.49803 * 294.83600 * 3 2 1 6 6 N 1.46926 * 108.77413 * 185.41350 * 5 3 2 7 7 C 1.34770 * 120.63172 * 233.58894 * 6 5 3 8 8 O 1.21626 * 119.99963 * 355.80171 * 7 6 5 9 9 C 1.47314 * 120.00401 * 175.80437 * 7 6 5 10 10 C 1.39010 * 120.90624 * 53.78906 * 9 7 6 11 11 C 1.39713 * 119.29005 * 180.02562 * 10 9 7 12 12 C 1.35249 * 121.08588 * 0.02562 * 11 10 9 13 13 N 1.35720 * 121.57081 * 359.97438 * 12 11 10 14 14 N 1.40206 * 134.08595 * 179.97438 * 13 12 11 15 15 N 1.29024 * 106.95902 * 180.02562 * 14 13 12 16 16 N 1.28590 * 110.78549 * 0.02562 * 15 14 13 17 17 C 1.32048 * 110.21575 * 359.71816 * 16 15 14 18 18 C 1.46926 * 118.73449 * 53.61225 * 6 5 3 19 19 C 1.53188 * 108.76850 * 306.37964 * 18 6 5 20 20 C 1.53037 * 109.31304 * 54.65720 * 19 18 6 21 21 H 1.09005 * 109.45507 * 58.62730 * 20 19 18 22 22 N 1.46490 * 109.46369 * 178.60075 * 20 19 18 23 23 C 1.36941 * 120.00367 * 275.03233 * 22 20 19 24 24 H 1.08002 * 119.99493 * 359.97438 * 23 22 20 25 25 C 1.38809 * 120.00209 * 179.97438 * 23 22 20 26 26 N 1.31619 * 120.00331 * 0.02562 * 25 23 22 27 27 Si 1.86809 * 119.99721 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46725 * 180.02562 * 27 25 23 29 29 H 1.48501 * 109.47096 * 299.99664 * 27 25 23 30 30 H 1.48496 * 109.46993 * 59.99984 * 27 25 23 31 31 H 1.08997 * 109.47335 * 59.99889 * 1 2 3 32 32 H 1.09009 * 109.47271 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47453 * 300.00201 * 1 2 3 34 34 H 1.09000 * 109.46714 * 239.99875 * 2 1 3 35 35 H 1.08997 * 109.47335 * 120.00111 * 2 1 3 36 36 H 1.08998 * 109.58643 * 305.20254 * 5 3 2 37 37 H 1.08996 * 109.58332 * 65.48526 * 5 3 2 38 38 H 1.07993 * 120.34911 * 0.02879 * 10 9 7 39 39 H 1.08000 * 119.45562 * 180.02562 * 11 10 9 40 40 H 1.08005 * 119.22025 * 180.02562 * 12 11 10 41 41 H 1.09001 * 109.59041 * 66.18118 * 18 6 5 42 42 H 1.09006 * 109.58274 * 186.45659 * 18 6 5 43 43 H 1.09002 * 109.50620 * 294.70351 * 19 18 6 44 44 H 1.09004 * 109.48906 * 174.60574 * 19 18 6 45 45 H 0.97006 * 120.00215 * 95.02661 * 22 20 19 46 46 H 0.96998 * 119.99974 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9827 0.8407 5 6 1.6385 2.1268 -1.3106 6 7 2.2450 3.4644 -1.3507 7 6 1.4858 4.5564 -1.5681 8 8 0.2999 4.4344 -1.8092 9 6 2.0921 5.8979 -1.5139 10 6 3.2082 6.2085 -2.2822 11 6 3.7562 7.4914 -2.2041 12 6 3.2189 8.4321 -1.3945 13 7 2.1298 8.1718 -0.6276 14 7 1.3744 8.9254 0.2818 15 7 0.4373 8.1554 0.7218 16 7 0.5171 6.9884 0.1876 17 6 1.5336 6.9404 -0.6539 18 6 3.6952 3.5887 -1.1499 19 6 4.0733 2.8882 0.1589 20 6 3.5652 1.4450 0.1257 21 1 4.0008 0.9263 -0.7283 22 7 3.9541 0.7620 1.3619 23 6 5.1920 0.1858 1.4656 24 1 5.8815 0.2345 0.6357 25 6 5.5607 -0.4609 2.6372 26 7 4.7203 -0.5208 3.6484 27 14 7.2492 -1.2476 2.7781 28 1 7.3952 -1.8694 4.1188 29 1 7.3988 -2.2897 1.7308 30 1 8.2956 -0.2096 2.5967 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8932 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.9964 1.5377 -2.1549 37 1 0.5531 2.2138 -1.3597 38 1 3.6469 5.4662 -2.9323 39 1 4.6230 7.7357 -2.8001 40 1 3.6667 9.4143 -1.3579 41 1 4.2209 3.1189 -1.9812 42 1 3.9673 4.6428 -1.0945 43 1 3.6187 3.4147 0.9981 44 1 5.1575 2.8897 0.2721 45 1 3.3347 0.7180 2.1072 46 1 4.9779 -0.9730 4.4669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037862007.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:50 Heat of formation + Delta-G solvation = 132.357718 kcal Electronic energy + Delta-G solvation = -30594.493669 eV Core-core repulsion = 26522.876148 eV Total energy + Delta-G solvation = -4071.617521 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.65496 -40.51362 -38.85579 -37.83954 -35.03092 -34.26458 -33.72641 -32.40438 -31.81223 -31.05999 -29.60465 -28.69069 -26.18167 -24.89064 -24.75508 -23.96719 -23.44654 -22.68114 -20.92837 -20.36359 -19.52303 -18.95441 -18.01732 -17.37014 -17.12143 -17.03002 -16.36156 -16.21205 -15.15682 -14.94508 -14.49932 -14.19720 -14.00306 -13.90358 -13.57985 -13.45678 -13.36699 -13.25033 -13.02709 -12.79190 -12.74937 -12.66456 -12.15787 -12.09114 -11.71789 -11.60507 -11.33500 -11.28048 -10.98040 -10.91076 -10.77032 -10.57933 -10.41906 -10.27449 -10.19219 -10.08045 -9.76924 -9.65847 -9.02190 -8.93089 -8.63217 -7.01529 -5.81467 -3.10846 -0.34077 0.10455 1.25270 1.83179 2.21184 2.53441 2.92271 3.19353 3.38741 3.43464 3.45348 3.55537 3.94000 4.01030 4.27979 4.53020 4.62711 4.84041 4.88605 4.94511 5.07213 5.15119 5.18471 5.20678 5.23647 5.37280 5.43006 5.45467 5.56033 5.61926 5.64329 5.84447 5.89218 5.93142 6.06381 6.10543 6.23632 6.30763 6.32610 6.41744 6.47839 6.61808 6.75990 6.91974 6.99208 7.25258 7.62978 7.94093 8.07256 8.36323 9.47772 10.04992 10.39569 11.40705 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.003118 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.204958 B = 8976.921534 C = 9887.515630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.121 3.879 6 N -0.593 5.593 7 C 0.568 3.432 8 O -0.515 6.515 9 C -0.085 4.085 10 C -0.027 4.027 11 C -0.139 4.139 12 C 0.121 3.879 13 N -0.306 5.306 14 N -0.107 5.107 15 N -0.005 5.005 16 N -0.302 5.302 17 C 0.270 3.730 18 C 0.097 3.903 19 C -0.153 4.153 20 C 0.184 3.816 21 H 0.049 0.951 22 N -0.720 5.720 23 C -0.242 4.242 24 H 0.069 0.931 25 C -0.010 4.010 26 N -0.930 5.930 27 Si 0.905 3.095 28 H -0.292 1.292 29 H -0.286 1.286 30 H -0.287 1.287 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.184 0.816 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.385 0.615 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.309 14.800 -16.416 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.001 4.001 6 N -0.326 5.326 7 C 0.353 3.647 8 O -0.391 6.391 9 C -0.094 4.094 10 C -0.052 4.052 11 C -0.163 4.163 12 C -0.006 4.006 13 N -0.086 5.086 14 N -0.090 5.090 15 N 0.002 4.998 16 N -0.159 5.159 17 C 0.012 3.988 18 C -0.026 4.026 19 C -0.194 4.194 20 C 0.074 3.926 21 H 0.067 0.933 22 N -0.360 5.360 23 C -0.373 4.373 24 H 0.087 0.913 25 C -0.207 4.207 26 N -0.578 5.578 27 Si 0.736 3.264 28 H -0.217 1.217 29 H -0.213 1.213 30 H -0.214 1.214 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.185 0.815 39 H 0.193 0.807 40 H 0.202 0.798 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.219 0.781 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.817 15.351 -15.396 21.817 hybrid contribution 1.649 -0.468 -0.069 1.715 sum -0.168 14.883 -15.464 21.463 Atomic orbital electron populations 1.21854 0.96718 1.01107 1.01429 1.21441 0.94451 0.95460 1.03532 1.21811 0.97712 0.96447 0.96663 0.91004 1.21846 0.99647 0.80401 0.98167 1.48055 1.08647 1.06513 1.69340 1.17418 0.86147 0.82911 0.78239 1.90862 1.14590 1.85899 1.47745 1.20216 0.97169 0.93395 0.98648 1.22005 0.90944 0.97270 0.95015 1.21017 1.02590 0.92190 1.00463 1.21771 0.85660 1.02604 0.90527 1.48947 1.21016 1.10433 1.28184 1.82815 1.04415 1.14936 1.06802 1.78027 1.11650 0.96346 1.13758 1.75192 1.16961 1.12503 1.11258 1.23567 0.91778 0.86528 0.96942 1.22157 0.79218 1.01310 0.99962 1.22710 1.02328 0.99501 0.94870 1.20174 0.90759 0.90344 0.91345 0.93282 1.42404 1.16496 1.64378 1.12702 1.19149 0.91820 1.27712 0.98595 0.91285 1.24729 0.98077 1.01434 0.96419 1.69646 1.35259 1.48151 1.04752 0.86315 0.84130 0.79183 0.76797 1.21745 1.21276 1.21357 0.93173 0.93125 0.92892 0.92395 0.89715 0.91093 0.88797 0.81532 0.80674 0.79844 0.90667 0.90607 0.92188 0.90386 0.78130 0.93407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.72 5.31 -26.73 -0.14 -1.86 16 3 C -0.11 -1.66 1.92 -90.50 -0.17 -1.84 16 4 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 5 C 0.12 1.62 5.32 -3.71 -0.02 1.60 16 6 N -0.59 -7.53 2.97 -174.07 -0.52 -8.05 16 7 C 0.57 7.91 7.26 -12.57 -0.09 7.82 16 8 O -0.52 -9.03 16.53 5.25 0.09 -8.95 16 9 C -0.09 -0.96 5.07 -102.71 -0.52 -1.48 16 10 C -0.03 -0.16 7.54 -38.74 -0.29 -0.45 16 11 C -0.14 -0.47 9.92 -40.10 -0.40 -0.87 16 12 C 0.12 0.68 11.15 -16.90 -0.19 0.49 16 13 N -0.31 -3.40 3.94 -10.99 -0.04 -3.44 16 14 N -0.11 -1.47 13.99 60.35 0.84 -0.62 16 15 N 0.00 -0.08 13.36 60.35 0.81 0.73 16 16 N -0.30 -5.12 12.24 32.20 0.39 -4.73 16 17 C 0.27 3.70 8.03 -154.52 -1.24 2.46 16 18 C 0.10 1.05 5.56 -3.71 -0.02 1.02 16 19 C -0.15 -2.34 5.66 -26.61 -0.15 -2.49 16 20 C 0.18 3.24 2.19 -67.89 -0.15 3.09 16 21 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 22 N -0.72 -16.57 4.33 -53.39 -0.23 -16.80 16 23 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 24 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 25 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 26 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 27 Si 0.90 21.46 29.55 -169.99 -5.02 16.43 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 30 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 31 H 0.05 0.62 6.70 -51.93 -0.35 0.28 16 32 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.59 7.22 -51.93 -0.37 1.22 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 1.34 5.75 -51.93 -0.30 1.05 16 38 H 0.17 0.53 7.37 -52.49 -0.39 0.14 16 39 H 0.18 -0.16 8.06 -52.49 -0.42 -0.59 16 40 H 0.18 0.33 8.06 -52.48 -0.42 -0.09 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.65 4.70 -51.93 -0.24 0.41 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.38 9.73 7.51 -40.82 -0.31 9.42 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -35.20 376.05 -6.72 -41.91 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -6.15 Total: 5.25 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -3.27 Total: -0.99 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: 1.98 Total: -59.33 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.09 Total: -8.95 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.20 -6.72 -41.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037862007.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.271 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds