Wall clock time and date at job start Wed Apr 1 2020 02:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47375 * 2 1 4 4 H 1.09000 * 109.49838 * 304.93944 * 3 2 1 5 5 C 1.53198 * 109.49450 * 65.00416 * 3 2 1 6 6 N 1.46925 * 108.77437 * 174.58839 * 5 3 2 7 7 C 1.34772 * 120.62858 * 126.36355 * 6 5 3 8 8 O 1.21625 * 120.00411 * 4.16489 * 7 6 5 9 9 C 1.47319 * 119.99914 * 184.15613 * 7 6 5 10 10 C 1.38995 * 120.90652 * 306.36870 * 9 7 6 11 11 C 1.39725 * 119.29056 * 180.02562 * 10 9 7 12 12 C 1.35261 * 121.07674 * 0.02562 * 11 10 9 13 13 N 1.35711 * 121.57933 * 359.97438 * 12 11 10 14 14 N 1.40203 * 134.09785 * 180.02562 * 13 12 11 15 15 N 1.29017 * 106.96214 * 179.97438 * 14 13 12 16 16 N 1.28591 * 110.78973 * 0.02562 * 15 14 13 17 17 C 1.32044 * 110.21246 * 359.97438 * 16 15 14 18 18 C 1.46921 * 118.73968 * 306.64049 * 6 5 3 19 19 C 1.52760 * 109.00612 * 53.30766 * 18 6 5 20 20 C 1.53038 * 109.38750 * 305.58893 * 19 18 6 21 21 H 1.09000 * 109.45969 * 181.25878 * 20 19 18 22 22 N 1.46494 * 109.46017 * 301.21855 * 20 19 18 23 23 C 1.36938 * 120.00262 * 275.06534 * 22 20 19 24 24 H 1.07996 * 119.99745 * 359.97438 * 23 22 20 25 25 C 1.38807 * 119.99727 * 179.97438 * 23 22 20 26 26 N 1.31617 * 120.00706 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99772 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.47063 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.46925 * 120.00181 * 27 25 23 30 30 H 1.48495 * 109.47477 * 240.00106 * 27 25 23 31 31 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46829 * 299.99196 * 1 2 3 33 33 H 1.08998 * 109.47278 * 59.99643 * 1 2 3 34 34 H 1.09002 * 109.47185 * 239.99916 * 2 1 3 35 35 H 1.08998 * 109.47278 * 120.00357 * 2 1 3 36 36 H 1.08999 * 109.58964 * 54.79359 * 5 3 2 37 37 H 1.09002 * 109.69796 * 294.44219 * 5 3 2 38 38 H 1.07999 * 120.35961 * 0.04339 * 10 9 7 39 39 H 1.08001 * 119.45806 * 179.72214 * 11 10 9 40 40 H 1.07997 * 119.20828 * 179.97438 * 12 11 10 41 41 H 1.08994 * 109.58921 * 173.14487 * 18 6 5 42 42 H 1.08997 * 109.58340 * 293.57565 * 18 6 5 43 43 H 1.09006 * 109.56672 * 185.55081 * 19 18 6 44 44 H 1.09004 * 109.35844 * 65.50252 * 19 18 6 45 45 H 0.97007 * 119.99499 * 95.06960 * 22 20 19 46 46 H 0.97001 * 120.00700 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9816 -0.8423 5 6 1.6352 2.1279 1.3089 6 7 2.2417 3.4655 1.3495 7 6 1.4816 4.5578 1.5630 8 8 0.2948 4.4362 1.7995 9 6 2.0884 5.8992 1.5100 10 6 3.2034 6.2093 2.2799 11 6 3.7512 7.4924 2.2038 12 6 3.2139 8.4342 1.3951 13 7 2.1259 8.1744 0.6267 14 7 1.3707 8.9288 -0.2823 15 7 0.4348 8.1587 -0.7244 16 7 0.5143 6.9913 -0.1913 17 6 1.5335 6.9409 0.6468 18 6 3.6915 3.5903 1.1467 19 6 4.0741 2.8879 -0.1547 20 6 3.5656 1.4448 -0.1217 21 1 3.8574 0.9359 -1.0403 22 7 4.1481 0.7484 1.0280 23 6 5.3862 0.1725 0.9244 24 1 5.9330 0.2315 -0.0050 25 6 5.9382 -0.4869 2.0139 26 7 5.2716 -0.5592 3.1465 27 14 7.6268 -1.2731 1.8724 28 1 8.1622 -1.0530 0.5049 29 1 8.5433 -0.6598 2.8670 30 1 7.5176 -2.7309 2.1330 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.9908 1.5396 2.1547 37 1 0.5499 2.2171 1.3565 38 1 3.6418 5.4664 2.9297 39 1 4.6148 7.7377 2.8042 40 1 3.6615 9.4164 1.3600 41 1 3.9624 4.6442 1.0849 42 1 4.2182 3.1236 1.9791 43 1 5.1586 2.8891 -0.2650 44 1 3.6219 3.4138 -0.9956 45 1 3.6566 0.6951 1.8627 46 1 5.6572 -1.0204 3.9078 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037862009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:55 Heat of formation + Delta-G solvation = 133.242804 kcal Electronic energy + Delta-G solvation = -30982.515198 eV Core-core repulsion = 26910.936057 eV Total energy + Delta-G solvation = -4071.579141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.60423 -40.41898 -38.81758 -37.83921 -34.82468 -34.05172 -33.75279 -32.34084 -31.80364 -30.97008 -29.53471 -28.51900 -26.20216 -24.81245 -24.65110 -23.90270 -23.56837 -23.15322 -20.92383 -20.31561 -19.07071 -18.43483 -17.93467 -17.40572 -17.18993 -16.90918 -16.24467 -16.08010 -15.09012 -14.67912 -14.60745 -14.14496 -14.05162 -13.95582 -13.54661 -13.39341 -13.33350 -13.19754 -12.97921 -12.75854 -12.62433 -12.52123 -12.32716 -11.97550 -11.61173 -11.44947 -11.24626 -11.14746 -11.05479 -10.88338 -10.82811 -10.50915 -10.36070 -10.30862 -10.20274 -9.90777 -9.85047 -9.62099 -9.02012 -8.90292 -8.38638 -7.05533 -5.86739 -3.15316 -0.25476 0.16968 1.31009 1.87704 2.32215 2.67889 3.05584 3.26979 3.35239 3.42410 3.44057 3.64657 4.03523 4.15623 4.37424 4.50643 4.73380 4.94743 4.97534 5.05342 5.16018 5.21357 5.26808 5.31545 5.38928 5.44410 5.52225 5.55060 5.67331 5.72632 5.76359 5.87241 5.95614 5.98022 6.08011 6.11543 6.27524 6.31049 6.37967 6.50419 6.53420 6.63276 6.69592 6.85853 6.93789 7.46136 7.62592 8.10654 8.11192 8.31660 9.43803 9.99585 10.35042 11.35491 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.003420 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.701040 B = 8186.048304 C = 9509.286137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.068 0.932 5 C 0.120 3.880 6 N -0.588 5.588 7 C 0.565 3.435 8 O -0.520 6.520 9 C -0.084 4.084 10 C -0.025 4.025 11 C -0.135 4.135 12 C 0.117 3.883 13 N -0.305 5.305 14 N -0.110 5.110 15 N -0.008 5.008 16 N -0.304 5.304 17 C 0.270 3.730 18 C 0.104 3.896 19 C -0.151 4.151 20 C 0.178 3.822 21 H 0.052 0.948 22 N -0.718 5.718 23 C -0.237 4.237 24 H 0.070 0.930 25 C -0.010 4.010 26 N -0.931 5.931 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.293 1.293 30 H -0.292 1.292 31 H 0.050 0.950 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.170 0.830 39 H 0.177 0.823 40 H 0.184 0.816 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.048 0.952 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 14.737 -1.324 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.124 4.124 4 H 0.086 0.914 5 C -0.001 4.001 6 N -0.319 5.319 7 C 0.350 3.650 8 O -0.396 6.396 9 C -0.093 4.093 10 C -0.051 4.051 11 C -0.159 4.159 12 C -0.010 4.010 13 N -0.085 5.085 14 N -0.093 5.093 15 N -0.001 5.001 16 N -0.162 5.162 17 C 0.012 3.988 18 C -0.018 4.018 19 C -0.192 4.192 20 C 0.068 3.932 21 H 0.070 0.930 22 N -0.361 5.361 23 C -0.369 4.369 24 H 0.088 0.912 25 C -0.206 4.206 26 N -0.580 5.580 27 Si 0.734 3.266 28 H -0.207 1.207 29 H -0.220 1.220 30 H -0.220 1.220 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.187 0.813 39 H 0.194 0.806 40 H 0.201 0.799 41 H 0.087 0.913 42 H 0.110 0.890 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.219 0.781 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.126 15.305 -2.373 15.801 hybrid contribution 1.723 -0.547 0.837 1.992 sum -1.404 14.758 -1.537 14.905 Atomic orbital electron populations 1.21863 0.96715 1.01106 1.01480 1.21410 0.94363 0.95513 1.03428 1.21770 0.97373 0.96322 0.96972 0.91367 1.21791 0.98999 0.80634 0.98681 1.48026 1.08781 1.06292 1.68843 1.17406 0.86164 0.82897 0.78509 1.90850 1.14635 1.85918 1.48227 1.20255 0.97156 0.93511 0.98425 1.22100 0.90805 0.97291 0.94866 1.21065 1.02499 0.92145 1.00157 1.21751 0.85818 1.02581 0.90857 1.48919 1.21101 1.10268 1.28206 1.82790 1.04592 1.14938 1.06970 1.77999 1.11737 0.96436 1.13910 1.75172 1.16761 1.12528 1.11716 1.23575 0.91730 0.86498 0.96953 1.21924 0.78974 1.00133 1.00753 1.22457 1.01936 0.99434 0.95354 1.20216 0.89739 0.90509 0.92738 0.92963 1.42483 1.19029 1.64018 1.10542 1.19257 0.93471 1.27056 0.97078 0.91209 1.24684 0.98504 1.01396 0.96039 1.69648 1.37978 1.48074 1.02264 0.86192 0.84269 0.79017 0.77118 1.20659 1.22002 1.21965 0.93120 0.92730 0.93280 0.91958 0.90432 0.90185 0.89221 0.81279 0.80620 0.79900 0.91328 0.88952 0.90515 0.93337 0.78088 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.67 37.16 0.36 -1.70 16 2 C -0.11 -1.67 5.19 -26.73 -0.14 -1.81 16 3 C -0.10 -1.62 2.14 -90.50 -0.19 -1.81 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 1.90 5.02 -3.71 -0.02 1.88 16 6 N -0.59 -8.70 2.98 -174.34 -0.52 -9.22 16 7 C 0.57 8.76 7.26 -12.57 -0.09 8.67 16 8 O -0.52 -9.86 16.53 5.26 0.09 -9.77 16 9 C -0.08 -1.05 5.07 -102.72 -0.52 -1.57 16 10 C -0.03 -0.20 7.54 -38.75 -0.29 -0.49 16 11 C -0.14 -0.64 9.92 -40.09 -0.40 -1.04 16 12 C 0.12 0.74 11.15 -16.90 -0.19 0.55 16 13 N -0.30 -3.51 3.94 -10.99 -0.04 -3.55 16 14 N -0.11 -1.52 13.99 60.35 0.84 -0.67 16 15 N -0.01 -0.13 13.36 60.35 0.81 0.68 16 16 N -0.30 -5.15 12.24 32.20 0.39 -4.76 16 17 C 0.27 3.83 8.03 -154.51 -1.24 2.59 16 18 C 0.10 1.42 5.26 -3.94 -0.02 1.40 16 19 C -0.15 -2.27 5.76 -26.83 -0.15 -2.43 16 20 C 0.18 3.09 2.53 -67.89 -0.17 2.92 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -15.24 3.72 -53.39 -0.20 -15.44 16 23 C -0.24 -5.82 9.93 -15.06 -0.15 -5.97 16 24 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 26 N -0.93 -25.58 13.06 55.49 0.72 -24.85 16 27 Si 0.90 20.77 29.55 -169.99 -5.02 15.74 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 30 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.73 6.70 -51.93 -0.35 0.38 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.37 7.69 -51.93 -0.40 0.97 16 36 H 0.08 1.37 6.64 -51.93 -0.34 1.02 16 37 H 0.09 1.45 5.75 -51.93 -0.30 1.15 16 38 H 0.17 1.06 7.37 -52.49 -0.39 0.68 16 39 H 0.18 0.11 8.06 -52.49 -0.42 -0.31 16 40 H 0.18 0.45 8.06 -52.49 -0.42 0.02 16 41 H 0.07 0.74 4.72 -51.93 -0.25 0.50 16 42 H 0.09 1.43 7.74 -51.93 -0.40 1.03 16 43 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.38 8.73 5.94 -40.82 -0.24 8.49 16 46 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 372.40 15.07 5.61 5.61 Total: -1.00 -32.71 372.40 -6.65 -39.36 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.01 Total: 6.05 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -3.31 Total: 0.82 kcal Atomic # 7 Polarization: -59.82 SS G_CDS: 2.01 Total: -57.81 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.71 -6.65 -39.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037862009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.601 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds