Wall clock time and date at job start Wed Apr 1 2020 02:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47159 * 2 1 4 4 H 1.08995 * 109.50028 * 55.06715 * 3 2 1 5 5 C 1.53185 * 109.49943 * 294.99466 * 3 2 1 6 6 N 1.46927 * 108.77984 * 185.41528 * 5 3 2 7 7 C 1.34777 * 120.62963 * 233.63754 * 6 5 3 8 8 O 1.21617 * 120.00087 * 355.83410 * 7 6 5 9 9 C 1.47311 * 119.99693 * 175.83800 * 7 6 5 10 10 C 1.39006 * 120.90971 * 53.75843 * 9 7 6 11 11 C 1.39717 * 119.29289 * 179.75049 * 10 9 7 12 12 C 1.35257 * 121.07907 * 0.51241 * 11 10 9 13 13 N 1.35715 * 121.57572 * 359.76447 * 12 11 10 14 14 N 1.40205 * 134.08845 * 180.02562 * 13 12 11 15 15 N 1.29024 * 106.95683 * 179.97438 * 14 13 12 16 16 N 1.28589 * 110.78913 * 0.02562 * 15 14 13 17 17 C 1.32042 * 110.21285 * 359.97438 * 16 15 14 18 18 C 1.46924 * 118.73858 * 53.60847 * 6 5 3 19 19 C 1.53193 * 108.77438 * 306.39640 * 18 6 5 20 20 C 1.53043 * 109.31625 * 54.63324 * 19 18 6 21 21 H 1.08993 * 109.45898 * 178.61100 * 20 19 18 22 22 N 1.46496 * 109.45597 * 58.65603 * 20 19 18 23 23 C 1.36938 * 120.00486 * 84.93559 * 22 20 19 24 24 H 1.07997 * 119.99342 * 359.97438 * 23 22 20 25 25 C 1.38807 * 120.00123 * 179.97438 * 23 22 20 26 26 N 1.31627 * 119.99679 * 180.02562 * 25 23 22 27 27 Si 1.86793 * 120.00325 * 359.97438 * 25 23 22 28 28 H 1.48498 * 109.47150 * 90.00236 * 27 25 23 29 29 H 1.48498 * 109.47186 * 210.00014 * 27 25 23 30 30 H 1.48501 * 109.46978 * 330.00506 * 27 25 23 31 31 H 1.09002 * 109.46811 * 60.00100 * 1 2 3 32 32 H 1.08998 * 109.47227 * 300.00071 * 1 2 3 33 33 H 1.09004 * 109.47117 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46811 * 119.99900 * 2 1 3 35 35 H 1.09006 * 109.47369 * 239.99694 * 2 1 3 36 36 H 1.09004 * 109.58982 * 305.20220 * 5 3 2 37 37 H 1.09002 * 109.58713 * 65.48677 * 5 3 2 38 38 H 1.08007 * 120.35280 * 359.97438 * 10 9 7 39 39 H 1.08001 * 119.46087 * 180.22457 * 11 10 9 40 40 H 1.08000 * 119.20923 * 179.73749 * 12 11 10 41 41 H 1.09001 * 109.58749 * 66.17964 * 18 6 5 42 42 H 1.08998 * 109.58979 * 186.61094 * 18 6 5 43 43 H 1.09004 * 109.49843 * 174.58893 * 19 18 6 44 44 H 1.09007 * 109.49951 * 294.64625 * 19 18 6 45 45 H 0.97004 * 120.00114 * 264.92969 * 22 20 19 46 46 H 0.96994 * 119.99785 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6352 2.1279 -1.3088 6 7 2.2417 3.4656 -1.3494 7 6 1.4816 4.5579 -1.5629 8 8 0.2949 4.4363 -1.7994 9 6 2.0885 5.8992 -1.5098 10 6 3.2020 6.2102 -2.2816 11 6 3.7470 7.4946 -2.2089 12 6 3.2152 8.4337 -1.3936 13 7 2.1322 8.1713 -0.6190 14 7 1.3825 8.9232 0.2967 15 7 0.4490 8.1518 0.7421 16 7 0.5259 6.9857 0.2057 17 6 1.5399 6.9379 -0.6387 18 6 3.6923 3.5898 -1.1522 19 6 4.0741 2.8879 0.1548 20 6 3.5656 1.4448 0.1218 21 1 3.8574 0.9358 1.0403 22 7 4.1481 0.7484 -1.0279 23 6 5.3862 0.1725 -0.9244 24 1 5.9333 0.2321 0.0048 25 6 5.9378 -0.4878 -2.0136 26 7 7.1276 -1.0417 -1.9139 27 14 4.9911 -0.5915 -3.6205 28 1 5.3314 0.5767 -4.4718 29 1 5.3558 -1.8440 -4.3300 30 1 3.5333 -0.5895 -3.3372 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 0.8900 35 1 1.8934 -0.5139 -0.8900 36 1 1.9909 1.5397 -2.1547 37 1 0.5497 2.2151 -1.3551 38 1 3.6390 5.4679 -2.9332 39 1 4.6100 7.7403 -2.8101 40 1 3.6633 9.4157 -1.3580 41 1 4.2158 3.1207 -1.9853 42 1 3.9643 4.6437 -1.0939 43 1 5.1586 2.8891 0.2651 44 1 3.6224 3.4141 0.9959 45 1 3.6567 0.6951 -1.8626 46 1 7.5130 -1.5035 -2.6749 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037862011.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:58 Heat of formation + Delta-G solvation = 137.763721 kcal Electronic energy + Delta-G solvation = -31107.172647 eV Core-core repulsion = 27035.789548 eV Total energy + Delta-G solvation = -4071.383100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.66445 -40.55265 -38.90909 -37.98959 -34.95030 -34.15767 -33.86397 -32.40302 -31.87617 -31.05084 -29.96549 -28.81802 -26.35012 -24.92622 -24.73362 -24.03074 -23.40165 -23.10441 -20.99675 -20.43233 -19.14804 -18.54945 -18.04020 -17.89970 -17.26241 -16.99325 -16.32727 -16.20796 -15.23973 -14.82843 -14.62429 -14.38689 -14.10914 -13.92922 -13.69043 -13.47011 -13.41122 -13.30602 -13.11343 -12.81161 -12.65462 -12.57083 -12.51892 -12.11701 -11.81553 -11.62027 -11.34684 -11.30523 -11.19656 -11.04336 -10.93473 -10.58810 -10.45874 -10.38969 -10.29102 -10.02035 -9.92420 -9.63627 -9.05903 -8.97305 -8.54467 -7.37514 -5.86835 -3.22767 -0.32568 0.10760 1.24860 1.82048 2.23007 2.57043 2.93839 3.19938 3.25642 3.28751 3.37012 3.57060 3.96830 4.06232 4.29722 4.48118 4.66489 4.84259 4.89449 4.95729 5.03777 5.08563 5.12437 5.21928 5.23762 5.29007 5.45173 5.47024 5.49655 5.54875 5.58862 5.68358 5.77806 5.89526 5.92173 5.97987 6.13026 6.17986 6.26494 6.35888 6.40304 6.46754 6.58547 6.69939 6.77744 7.30895 7.89357 7.97468 8.05372 8.32087 9.09993 9.82366 10.02085 11.31480 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013494 B = 0.003631 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.447154 B = 7709.730863 C = 8774.217356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.108 4.108 4 H 0.074 0.926 5 C 0.119 3.881 6 N -0.592 5.592 7 C 0.567 3.433 8 O -0.518 6.518 9 C -0.086 4.086 10 C -0.025 4.025 11 C -0.136 4.136 12 C 0.119 3.881 13 N -0.305 5.305 14 N -0.108 5.108 15 N -0.007 5.007 16 N -0.304 5.304 17 C 0.270 3.730 18 C 0.102 3.898 19 C -0.150 4.150 20 C 0.185 3.815 21 H 0.062 0.938 22 N -0.743 5.743 23 C -0.242 4.242 24 H 0.091 0.909 25 C 0.008 3.992 26 N -0.932 5.932 27 Si 0.877 3.123 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.277 1.277 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.169 0.831 39 H 0.177 0.823 40 H 0.185 0.815 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.360 0.640 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 16.106 -1.043 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.128 4.128 4 H 0.093 0.907 5 C -0.003 4.003 6 N -0.324 5.324 7 C 0.352 3.648 8 O -0.394 6.394 9 C -0.095 4.095 10 C -0.050 4.050 11 C -0.160 4.160 12 C -0.008 4.008 13 N -0.085 5.085 14 N -0.091 5.091 15 N 0.000 5.000 16 N -0.162 5.162 17 C 0.012 3.988 18 C -0.020 4.020 19 C -0.191 4.191 20 C 0.075 3.925 21 H 0.080 0.920 22 N -0.387 5.387 23 C -0.372 4.372 24 H 0.108 0.892 25 C -0.188 4.188 26 N -0.580 5.580 27 Si 0.708 3.292 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.203 1.203 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.186 0.814 39 H 0.194 0.806 40 H 0.202 0.798 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.230 16.651 0.046 18.153 hybrid contribution 0.348 -0.249 -1.850 1.899 sum -6.883 16.402 -1.803 17.879 Atomic orbital electron populations 1.21867 0.96515 1.01253 1.01599 1.21431 0.94584 0.95463 1.03394 1.21824 0.97444 0.96397 0.97126 0.90739 1.21777 0.99348 0.80736 0.98395 1.48057 1.08823 1.06259 1.69257 1.17415 0.86144 0.82909 0.78313 1.90852 1.14618 1.85929 1.47988 1.20210 0.97295 0.93492 0.98543 1.22084 0.90730 0.97303 0.94912 1.21060 1.02562 0.92122 1.00208 1.21770 0.85847 1.02620 0.90521 1.48926 1.21320 1.10294 1.27956 1.82807 1.04768 1.14950 1.06585 1.78007 1.11618 0.96382 1.13988 1.75170 1.16848 1.12630 1.11525 1.23555 0.91799 0.86495 0.96910 1.22041 0.78738 1.00569 1.00655 1.22505 1.02444 0.98877 0.95253 1.20184 0.89399 0.90592 0.92344 0.92016 1.42842 1.19581 1.65858 1.10412 1.19052 0.91774 1.27080 0.99254 0.89160 1.24636 0.96427 1.00201 0.97549 1.69690 1.16337 1.41113 1.30846 0.86680 0.79678 0.77531 0.85346 1.21171 1.21730 1.20327 0.92823 0.92997 0.92996 0.91429 0.91044 0.91078 0.88861 0.81389 0.80565 0.79818 0.89457 0.90885 0.89977 0.92877 0.80608 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.67 37.16 0.36 -1.56 16 2 C -0.11 -1.59 5.19 -26.73 -0.14 -1.73 16 3 C -0.11 -1.57 2.14 -90.50 -0.19 -1.76 16 4 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 5 C 0.12 1.75 5.01 -3.71 -0.02 1.73 16 6 N -0.59 -8.20 2.97 -174.08 -0.52 -8.72 16 7 C 0.57 8.28 7.26 -12.57 -0.09 8.19 16 8 O -0.52 -9.34 16.53 5.26 0.09 -9.25 16 9 C -0.09 -1.01 5.07 -102.71 -0.52 -1.54 16 10 C -0.02 -0.18 7.54 -38.74 -0.29 -0.47 16 11 C -0.14 -0.58 9.92 -40.09 -0.40 -0.98 16 12 C 0.12 0.70 11.15 -16.90 -0.19 0.51 16 13 N -0.30 -3.36 3.94 -10.99 -0.04 -3.40 16 14 N -0.11 -1.45 13.99 60.35 0.84 -0.60 16 15 N -0.01 -0.11 13.36 60.35 0.81 0.70 16 16 N -0.30 -4.98 12.24 32.20 0.39 -4.59 16 17 C 0.27 3.67 8.03 -154.52 -1.24 2.43 16 18 C 0.10 1.30 5.29 -3.71 -0.02 1.28 16 19 C -0.15 -2.16 5.78 -26.61 -0.15 -2.31 16 20 C 0.18 3.05 2.53 -67.89 -0.17 2.88 16 21 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 22 N -0.74 -14.92 3.52 -53.39 -0.19 -15.11 16 23 C -0.24 -6.03 10.41 -15.06 -0.16 -6.19 16 24 H 0.09 2.46 8.06 -52.49 -0.42 2.03 16 25 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 26 N -0.93 -27.37 13.97 55.49 0.78 -26.59 16 27 Si 0.88 20.29 27.73 -169.99 -4.71 15.58 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.28 -6.01 6.52 56.52 0.37 -5.65 16 31 H 0.05 0.66 6.69 -51.93 -0.35 0.31 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.16 7.69 -51.93 -0.40 0.76 16 36 H 0.07 1.10 6.64 -51.93 -0.34 0.75 16 37 H 0.09 1.40 5.75 -51.93 -0.30 1.10 16 38 H 0.17 0.91 7.37 -52.48 -0.39 0.52 16 39 H 0.18 0.03 8.06 -52.49 -0.42 -0.39 16 40 H 0.18 0.37 8.06 -52.49 -0.42 -0.05 16 41 H 0.09 1.21 7.74 -51.93 -0.40 0.81 16 42 H 0.07 0.73 4.71 -51.93 -0.24 0.48 16 43 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.36 7.24 3.80 -40.82 -0.16 7.08 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -34.13 369.31 -6.28 -40.41 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.97 Total: 5.43 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -3.32 Total: 0.59 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: 2.07 Total: -58.32 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.71 Total: 15.58 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.13 -6.28 -40.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037862011.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.174 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 144.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds