Wall clock time and date at job start Wed Apr 1 2020 02:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47495 * 2 1 4 4 H 1.08998 * 109.52512 * 54.91721 * 3 2 1 5 5 C 1.52765 * 109.56075 * 294.96427 * 3 2 1 6 6 N 1.46930 * 109.00554 * 185.55274 * 5 3 2 7 7 C 1.34776 * 120.63014 * 233.58368 * 6 5 3 8 8 O 1.21524 * 119.99732 * 7.60714 * 7 6 5 9 9 C 1.48117 * 120.00173 * 187.60397 * 7 6 5 10 10 C 1.39819 * 119.37677 * 189.77643 * 9 7 6 11 11 C 1.36964 * 119.60614 * 179.97438 * 10 9 7 12 12 C 1.39806 * 118.25905 * 0.02651 * 11 10 9 13 13 N 1.34649 * 135.01017 * 179.97438 * 12 11 10 14 14 N 1.28674 * 109.16284 * 180.02562 * 13 12 11 15 15 N 1.28765 * 111.84348 * 0.02562 * 14 13 12 16 16 H 0.97004 * 125.86088 * 179.97438 * 15 14 13 17 17 C 1.37248 * 108.28748 * 0.02562 * 15 14 13 18 18 N 1.31956 * 134.71436 * 179.97438 * 17 15 14 19 19 C 1.46921 * 118.73830 * 53.30944 * 6 5 3 20 20 C 1.53195 * 108.77821 * 306.64222 * 19 6 5 21 21 C 1.53037 * 109.49732 * 175.00099 * 3 2 1 22 22 H 1.09000 * 109.46460 * 61.29716 * 21 3 2 23 23 N 1.46505 * 109.44735 * 301.32735 * 21 3 2 24 24 C 1.36936 * 119.99475 * 154.94329 * 23 21 3 25 25 H 1.07992 * 120.00523 * 359.97438 * 24 23 21 26 26 C 1.38817 * 119.99398 * 180.02562 * 24 23 21 27 27 N 1.31616 * 120.00111 * 359.97438 * 26 24 23 28 28 Si 1.86797 * 119.99965 * 179.97438 * 26 24 23 29 29 H 1.48509 * 109.47159 * 89.99711 * 28 26 24 30 30 H 1.48500 * 109.47462 * 209.99978 * 28 26 24 31 31 H 1.48508 * 109.47190 * 330.00458 * 28 26 24 32 32 H 1.09003 * 109.46704 * 60.00068 * 1 2 3 33 33 H 1.08995 * 109.47378 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46927 * 300.00595 * 1 2 3 35 35 H 1.08998 * 109.46927 * 239.99405 * 2 1 3 36 36 H 1.09003 * 109.46704 * 119.99932 * 2 1 3 37 37 H 1.09001 * 109.50816 * 65.67323 * 5 3 2 38 38 H 1.08995 * 109.43400 * 305.38708 * 5 3 2 39 39 H 1.07996 * 120.19554 * 0.02562 * 10 9 7 40 40 H 1.08005 * 120.86967 * 180.29879 * 11 10 9 41 41 H 1.09001 * 109.58822 * 66.42901 * 19 6 5 42 42 H 1.09008 * 109.58799 * 186.71639 * 19 6 5 43 43 H 1.08995 * 109.50174 * 174.58475 * 20 19 6 44 44 H 1.09000 * 109.49542 * 294.68500 * 20 19 6 45 45 H 0.96993 * 120.00027 * 334.93970 * 23 21 3 46 46 H 0.97003 * 119.99754 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9828 0.8407 5 6 1.6378 2.1272 -1.3050 6 7 2.2453 3.4643 -1.3508 7 6 1.4859 4.5565 -1.5674 8 8 0.2748 4.4597 -1.5893 9 6 2.1276 5.8746 -1.7787 10 6 1.3366 7.0274 -1.7968 11 6 1.9251 8.2488 -1.9914 12 6 3.3113 8.2952 -2.1670 13 7 4.2125 9.2735 -2.3763 14 7 5.3860 8.7540 -2.4694 15 7 5.3548 7.4734 -2.3381 16 1 6.1211 6.8797 -2.3739 17 6 4.0513 7.0925 -2.1398 18 7 3.4399 5.9386 -1.9501 19 6 3.6954 3.5886 -1.1499 20 6 4.0738 2.8880 0.1588 21 6 3.5653 1.4449 0.1257 22 1 4.0009 0.9259 -0.7281 23 7 3.9539 0.7620 1.3622 24 6 5.1915 0.1851 1.4658 25 1 5.8808 0.2331 0.6359 26 6 5.5595 -0.4625 2.6372 27 7 4.7191 -0.5214 3.6485 28 14 7.2474 -1.2501 2.7784 29 1 8.2130 -0.2584 3.3165 30 1 7.1742 -2.4169 3.6940 31 1 7.6970 -1.7011 1.4368 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 0.5525 2.2173 -1.3493 38 1 1.9923 1.5358 -2.1491 39 1 0.2681 6.9553 -1.6574 40 1 1.3343 9.1528 -2.0043 41 1 4.2211 3.1187 -1.9812 42 1 3.9676 4.6427 -1.0944 43 1 5.1579 2.8892 0.2719 44 1 3.6194 3.4147 0.9980 45 1 3.3346 0.7186 2.1075 46 1 4.9762 -0.9742 4.4669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037866085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:22 Heat of formation + Delta-G solvation = 120.638027 kcal Electronic energy + Delta-G solvation = -30390.152058 eV Core-core repulsion = 26318.026333 eV Total energy + Delta-G solvation = -4072.125725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.81988 -40.78372 -39.02639 -37.75836 -35.11565 -34.51462 -33.80186 -32.31234 -31.75891 -31.39523 -29.51502 -28.76906 -26.41142 -24.94605 -24.26766 -23.76055 -23.23174 -22.66512 -20.91831 -20.61440 -19.51784 -19.19060 -18.81989 -17.55202 -17.08597 -17.04337 -16.13374 -15.74901 -15.40578 -15.08838 -14.57685 -14.34662 -13.93808 -13.86145 -13.61792 -13.51662 -13.29857 -13.19597 -13.01468 -12.80010 -12.66471 -12.34380 -12.14056 -12.12507 -11.75013 -11.56318 -11.30825 -10.94931 -10.91082 -10.71847 -10.48139 -10.38816 -10.24228 -10.17486 -9.81057 -9.72745 -9.62729 -9.56986 -9.29729 -8.84157 -8.53603 -6.97953 -5.80454 -3.08915 -0.34043 0.51380 1.64393 1.68273 2.45957 2.80971 3.23401 3.33331 3.39239 3.44745 3.46537 3.75541 3.91048 4.22634 4.32366 4.54747 4.82792 4.90823 5.09225 5.18381 5.27348 5.30951 5.41155 5.43727 5.54353 5.57390 5.61103 5.67015 5.75676 5.83705 5.88050 6.06666 6.09477 6.12459 6.22589 6.33789 6.36104 6.39993 6.44254 6.55178 6.67081 6.82381 6.87421 6.94659 7.04602 7.37641 7.65542 7.66575 7.96665 8.37818 9.49285 10.07012 10.41944 11.41989 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011456 B = 0.003166 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.637044 B = 8841.560199 C =10870.719192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.116 3.884 6 N -0.577 5.577 7 C 0.567 3.433 8 O -0.532 6.532 9 C 0.155 3.845 10 C -0.121 4.121 11 C 0.000 4.000 12 C -0.024 4.024 13 N -0.239 5.239 14 N 0.011 4.989 15 N -0.400 5.400 16 H 0.461 0.539 17 C 0.209 3.791 18 N -0.429 5.429 19 C 0.075 3.925 20 C -0.152 4.152 21 C 0.182 3.818 22 H 0.047 0.953 23 N -0.720 5.720 24 C -0.238 4.238 25 H 0.069 0.931 26 C -0.012 4.012 27 N -0.931 5.931 28 Si 0.904 3.096 29 H -0.291 1.291 30 H -0.292 1.292 31 H -0.282 1.282 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.168 0.832 40 H 0.161 0.839 41 H 0.064 0.936 42 H 0.132 0.868 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.781 14.724 -13.674 20.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.089 0.911 5 C -0.006 4.006 6 N -0.308 5.308 7 C 0.352 3.648 8 O -0.409 6.409 9 C 0.002 3.998 10 C -0.144 4.144 11 C -0.031 4.031 12 C -0.152 4.152 13 N -0.116 5.116 14 N 0.028 4.972 15 N -0.132 5.132 16 H 0.310 0.690 17 C -0.034 4.034 18 N -0.146 5.146 19 C -0.048 4.048 20 C -0.193 4.193 21 C 0.072 3.928 22 H 0.065 0.935 23 N -0.361 5.361 24 C -0.369 4.369 25 H 0.087 0.913 26 C -0.208 4.208 27 N -0.580 5.580 28 Si 0.735 3.265 29 H -0.218 1.218 30 H -0.218 1.218 31 H -0.208 1.208 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.185 0.815 40 H 0.178 0.822 41 H 0.082 0.918 42 H 0.149 0.851 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.218 0.782 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.844 15.101 -13.933 21.110 hybrid contribution 0.547 -1.120 0.650 1.406 sum -4.297 13.981 -13.283 19.758 Atomic orbital electron populations 1.21846 0.96756 1.01071 1.01331 1.21451 0.94403 0.95593 1.03521 1.21699 0.97779 0.96317 0.96624 0.91121 1.21805 0.99494 0.81046 0.98275 1.48054 1.09442 1.06151 1.67110 1.17685 0.86182 0.82686 0.78251 1.90798 1.12758 1.84815 1.52487 1.21394 0.87161 0.95391 0.95878 1.21732 1.02901 0.90552 0.99251 1.20534 0.89926 0.99261 0.93385 1.20688 0.96516 0.90851 1.07118 1.75423 0.94124 1.24777 1.17301 1.78128 1.18006 0.89671 1.11442 1.44714 1.07523 1.07085 1.53830 0.69049 1.20109 0.86696 0.92396 1.04228 1.66798 1.10191 1.23866 1.13772 1.23040 0.78116 1.05521 0.98139 1.22706 1.01985 0.99082 0.95548 1.20221 0.90714 0.90723 0.91151 0.93479 1.42411 1.16464 1.64518 1.12688 1.19203 0.91830 1.27293 0.98565 0.91297 1.24719 0.98088 1.01563 0.96461 1.69656 1.35168 1.48403 1.04747 0.86242 0.84167 0.78778 0.77287 1.21840 1.21817 1.20808 0.93201 0.93158 0.92937 0.92449 0.89738 0.88905 0.91238 0.81499 0.82189 0.91815 0.85130 0.90786 0.92549 0.78223 0.93525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 37.16 0.36 -1.67 16 2 C -0.11 -1.75 5.31 -26.73 -0.14 -1.89 16 3 C -0.10 -1.65 1.91 -90.72 -0.17 -1.83 16 4 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 5 C 0.12 1.60 5.31 -3.93 -0.02 1.58 16 6 N -0.58 -7.91 2.98 -174.04 -0.52 -8.43 16 7 C 0.57 7.68 7.65 -12.21 -0.09 7.59 16 8 O -0.53 -8.17 15.76 5.34 0.08 -8.09 16 9 C 0.16 1.76 6.57 -82.93 -0.55 1.21 16 10 C -0.12 -1.06 9.55 -39.45 -0.38 -1.44 16 11 C 0.00 0.00 10.16 -39.46 -0.40 -0.40 16 12 C -0.02 -0.25 7.38 -84.91 -0.63 -0.88 16 13 N -0.24 -2.66 12.43 32.12 0.40 -2.26 16 14 N 0.01 0.11 13.28 60.35 0.80 0.91 16 15 N -0.40 -3.33 7.06 31.13 0.22 -3.11 16 16 H 0.46 2.28 8.96 -190.26 -1.71 0.58 16 17 C 0.21 2.14 8.56 -156.28 -1.34 0.81 16 18 N -0.43 -4.71 6.13 -8.90 -0.05 -4.76 16 19 C 0.07 0.99 5.87 -3.71 -0.02 0.97 16 20 C -0.15 -2.52 5.66 -26.61 -0.15 -2.67 16 21 C 0.18 3.36 2.20 -67.89 -0.15 3.21 16 22 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 23 N -0.72 -16.93 4.33 -53.38 -0.23 -17.16 16 24 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 25 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 26 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 27 N -0.93 -27.34 13.06 55.49 0.72 -26.61 16 28 Si 0.90 21.79 29.55 -169.99 -5.02 16.76 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 31 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 32 H 0.05 0.60 6.70 -51.93 -0.35 0.25 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 1.60 7.22 -51.93 -0.37 1.22 16 37 H 0.09 1.29 5.71 -51.93 -0.30 1.00 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.17 1.23 7.64 -52.49 -0.40 0.82 16 40 H 0.16 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.13 1.64 4.03 -84.70 -0.34 1.29 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 45 H 0.38 9.78 7.51 -40.82 -0.31 9.47 16 46 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -31.71 372.32 -9.46 -41.16 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.54 Total: 8.24 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -3.92 Total: -2.25 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: 1.34 Total: -61.43 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.08 Total: -8.09 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.71 -9.46 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037866085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.800 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds