Wall clock time and date at job start Wed Apr 1 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47495 * 2 1 4 4 H 1.08998 * 109.52512 * 54.91721 * 3 2 1 5 5 C 1.52765 * 109.56075 * 294.96427 * 3 2 1 6 6 N 1.46930 * 109.00554 * 185.55274 * 5 3 2 7 7 C 1.34776 * 120.63014 * 233.58368 * 6 5 3 8 8 O 1.21524 * 119.99732 * 7.60714 * 7 6 5 9 9 C 1.48117 * 120.00173 * 187.60397 * 7 6 5 10 10 C 1.39819 * 119.37677 * 189.77643 * 9 7 6 11 11 C 1.36964 * 119.60614 * 179.97438 * 10 9 7 12 12 C 1.39806 * 118.25905 * 0.02651 * 11 10 9 13 13 N 1.34649 * 135.01017 * 179.97438 * 12 11 10 14 14 N 1.28674 * 109.16284 * 180.02562 * 13 12 11 15 15 N 1.28765 * 111.84348 * 0.02562 * 14 13 12 16 16 H 0.97004 * 125.86088 * 179.97438 * 15 14 13 17 17 C 1.37248 * 108.28748 * 0.02562 * 15 14 13 18 18 N 1.31956 * 134.71436 * 179.97438 * 17 15 14 19 19 C 1.46921 * 118.73830 * 53.30944 * 6 5 3 20 20 C 1.53195 * 108.77821 * 306.64222 * 19 6 5 21 21 C 1.53037 * 109.49732 * 175.00099 * 3 2 1 22 22 H 1.09000 * 109.46460 * 61.29716 * 21 3 2 23 23 N 1.46505 * 109.44735 * 301.32735 * 21 3 2 24 24 C 1.36936 * 119.99475 * 154.94329 * 23 21 3 25 25 H 1.07992 * 120.00523 * 359.97438 * 24 23 21 26 26 C 1.38817 * 119.99398 * 180.02562 * 24 23 21 27 27 N 1.31616 * 120.00111 * 359.97438 * 26 24 23 28 28 Si 1.86797 * 119.99965 * 179.97438 * 26 24 23 29 29 H 1.48509 * 109.47159 * 89.99711 * 28 26 24 30 30 H 1.48500 * 109.47462 * 209.99978 * 28 26 24 31 31 H 1.48508 * 109.47190 * 330.00458 * 28 26 24 32 32 H 1.09003 * 109.46704 * 60.00068 * 1 2 3 33 33 H 1.08995 * 109.47378 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46927 * 300.00595 * 1 2 3 35 35 H 1.08998 * 109.46927 * 239.99405 * 2 1 3 36 36 H 1.09003 * 109.46704 * 119.99932 * 2 1 3 37 37 H 1.09001 * 109.50816 * 65.67323 * 5 3 2 38 38 H 1.08995 * 109.43400 * 305.38708 * 5 3 2 39 39 H 1.07996 * 120.19554 * 0.02562 * 10 9 7 40 40 H 1.08005 * 120.86967 * 180.29879 * 11 10 9 41 41 H 1.09001 * 109.58822 * 66.42901 * 19 6 5 42 42 H 1.09008 * 109.58799 * 186.71639 * 19 6 5 43 43 H 1.08995 * 109.50174 * 174.58475 * 20 19 6 44 44 H 1.09000 * 109.49542 * 294.68500 * 20 19 6 45 45 H 0.96993 * 120.00027 * 334.93970 * 23 21 3 46 46 H 0.97003 * 119.99754 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9828 0.8407 5 6 1.6378 2.1272 -1.3050 6 7 2.2453 3.4643 -1.3508 7 6 1.4859 4.5565 -1.5674 8 8 0.2748 4.4597 -1.5893 9 6 2.1276 5.8746 -1.7787 10 6 1.3366 7.0274 -1.7968 11 6 1.9251 8.2488 -1.9914 12 6 3.3113 8.2952 -2.1670 13 7 4.2125 9.2735 -2.3763 14 7 5.3860 8.7540 -2.4694 15 7 5.3548 7.4734 -2.3381 16 1 6.1211 6.8797 -2.3739 17 6 4.0513 7.0925 -2.1398 18 7 3.4399 5.9386 -1.9501 19 6 3.6954 3.5886 -1.1499 20 6 4.0738 2.8880 0.1588 21 6 3.5653 1.4449 0.1257 22 1 4.0009 0.9259 -0.7281 23 7 3.9539 0.7620 1.3622 24 6 5.1915 0.1851 1.4658 25 1 5.8808 0.2331 0.6359 26 6 5.5595 -0.4625 2.6372 27 7 4.7191 -0.5214 3.6485 28 14 7.2474 -1.2501 2.7784 29 1 8.2130 -0.2584 3.3165 30 1 7.1742 -2.4169 3.6940 31 1 7.6970 -1.7011 1.4368 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 0.5525 2.2173 -1.3493 38 1 1.9923 1.5358 -2.1491 39 1 0.2681 6.9553 -1.6574 40 1 1.3343 9.1528 -2.0043 41 1 4.2211 3.1187 -1.9812 42 1 3.9676 4.6427 -1.0944 43 1 5.1579 2.8892 0.2719 44 1 3.6194 3.4147 0.9980 45 1 3.3346 0.7186 2.1075 46 1 4.9762 -0.9742 4.4669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037866085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:21 Heat of formation + Delta-G solvation = 100.213789 kcal Electronic energy + Delta-G solvation = -30391.037719 eV Core-core repulsion = 26318.026333 eV Total energy + Delta-G solvation = -4073.011387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.56467 -41.79124 -40.02807 -38.95698 -36.34178 -35.55990 -35.18739 -33.49114 -33.01959 -32.23063 -31.08672 -30.01789 -27.49342 -26.22342 -25.38476 -24.80312 -24.39862 -23.76939 -22.24957 -21.70089 -20.81140 -19.98558 -19.61950 -19.09903 -18.46368 -17.80857 -17.23842 -16.86502 -16.52054 -16.41540 -15.84656 -15.60439 -15.37732 -15.02004 -14.75437 -14.66299 -14.48097 -14.30417 -14.29304 -13.87747 -13.60544 -13.54487 -13.23706 -13.06401 -12.88631 -12.84430 -12.77809 -12.55818 -12.50885 -12.18057 -12.04040 -11.84776 -11.58705 -11.54260 -11.47646 -11.09190 -10.93938 -10.46583 -10.37471 -10.07798 -9.69521 -8.93571 -7.91214 -5.18406 -1.11948 -0.19672 0.84293 0.97842 1.47658 1.48168 1.55858 1.56557 1.80981 2.44300 2.54421 2.57917 2.95178 3.16759 3.37876 3.42426 3.63981 3.78326 3.81683 4.00144 4.05064 4.18986 4.24075 4.35989 4.36754 4.43474 4.53720 4.63947 4.70458 4.73926 4.80427 4.81021 4.88902 5.02078 5.06481 5.08491 5.15694 5.24653 5.31928 5.38251 5.46325 5.51421 5.55553 5.58572 5.69254 6.09449 6.29790 6.31128 6.89235 6.93040 7.36828 8.13376 8.36675 9.32302 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011456 B = 0.003166 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.637044 B = 8841.560199 C =10870.719192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.093 4.093 4 H 0.053 0.947 5 C 0.122 3.878 6 N -0.583 5.583 7 C 0.568 3.432 8 O -0.551 6.551 9 C 0.140 3.860 10 C -0.115 4.115 11 C 0.015 3.985 12 C -0.034 4.034 13 N -0.258 5.258 14 N 0.007 4.993 15 N -0.384 5.384 16 H 0.474 0.526 17 C 0.199 3.801 18 N -0.438 5.438 19 C 0.087 3.913 20 C -0.142 4.142 21 C 0.178 3.822 22 H 0.047 0.953 23 N -0.731 5.731 24 C -0.230 4.230 25 H 0.076 0.924 26 C -0.076 4.076 27 N -0.970 5.970 28 Si 0.966 3.034 29 H -0.290 1.290 30 H -0.300 1.300 31 H -0.269 1.269 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.045 0.955 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.183 0.817 40 H 0.195 0.805 41 H 0.077 0.923 42 H 0.146 0.854 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.370 0.630 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 16.091 -15.747 23.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.113 4.113 4 H 0.071 0.929 5 C 0.000 4.000 6 N -0.313 5.313 7 C 0.354 3.646 8 O -0.429 6.429 9 C -0.012 4.012 10 C -0.139 4.139 11 C -0.015 4.015 12 C -0.161 4.161 13 N -0.135 5.135 14 N 0.024 4.976 15 N -0.119 5.119 16 H 0.325 0.675 17 C -0.045 4.045 18 N -0.155 5.155 19 C -0.036 4.036 20 C -0.183 4.183 21 C 0.069 3.931 22 H 0.065 0.935 23 N -0.370 5.370 24 C -0.362 4.362 25 H 0.094 0.906 26 C -0.268 4.268 27 N -0.621 5.621 28 Si 0.796 3.204 29 H -0.218 1.218 30 H -0.227 1.227 31 H -0.193 1.193 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.201 0.799 40 H 0.212 0.788 41 H 0.095 0.905 42 H 0.162 0.838 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.202 0.798 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.979 16.491 -16.066 23.556 hybrid contribution 0.581 -1.470 1.228 2.002 sum -4.397 15.021 -14.838 21.567 Atomic orbital electron populations 1.21781 0.94649 1.01942 1.01902 1.21352 0.96236 0.94978 1.01921 1.21546 0.95636 0.96649 0.97455 0.92898 1.21721 0.99794 0.81316 0.97166 1.48091 1.09491 1.06292 1.67427 1.17960 0.85962 0.83236 0.77410 1.90782 1.13576 1.85270 1.53273 1.21199 0.87652 0.94995 0.97374 1.21879 1.03431 0.89917 0.98663 1.20913 0.89195 1.00153 0.91233 1.21051 0.97478 0.90541 1.07045 1.75411 0.94493 1.25331 1.18258 1.78081 1.17914 0.90244 1.11363 1.44748 1.07606 1.06800 1.52701 0.67473 1.20172 0.87304 0.92283 1.04762 1.66516 1.10254 1.24398 1.14334 1.22988 0.78156 1.06051 0.96357 1.22509 1.00930 0.97770 0.97052 1.20453 0.92604 0.91157 0.88859 0.93538 1.42587 1.15469 1.65000 1.13912 1.19581 0.92628 1.25663 0.98291 0.90578 1.25463 1.01487 1.03248 0.96576 1.69817 1.37001 1.50148 1.05171 0.85242 0.80271 0.77422 0.77454 1.21782 1.22713 1.19341 0.91365 0.92189 0.93559 0.91659 0.93611 0.88512 0.89614 0.79946 0.78754 0.90502 0.83816 0.91937 0.94294 0.79800 0.94304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.67 71.98 0.70 -3.03 16 2 C -0.11 -3.34 5.31 30.59 0.16 -3.18 16 3 C -0.09 -2.94 1.91 -10.86 -0.02 -2.96 16 4 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 5 C 0.12 3.19 5.31 86.22 0.46 3.65 16 6 N -0.58 -15.11 2.98 -822.81 -2.45 -17.56 16 7 C 0.57 14.45 7.65 86.87 0.66 15.12 16 8 O -0.55 -16.01 15.76 -3.79 -0.06 -16.07 16 9 C 0.14 2.90 6.57 42.05 0.28 3.18 16 10 C -0.12 -1.73 9.55 22.35 0.21 -1.52 16 11 C 0.02 0.20 10.16 22.35 0.23 0.42 16 12 C -0.03 -0.61 7.38 39.83 0.29 -0.32 16 13 N -0.26 -5.27 12.43 -52.29 -0.65 -5.92 16 14 N 0.01 0.14 13.28 37.02 0.49 0.63 16 15 N -0.38 -5.73 7.06 -55.41 -0.39 -6.13 16 16 H 0.47 3.87 8.96 -219.84 -1.97 1.90 16 17 C 0.20 3.69 8.56 134.31 1.15 4.84 16 18 N -0.44 -8.77 6.13 -182.08 -1.12 -9.89 16 19 C 0.09 2.20 5.87 86.36 0.51 2.70 16 20 C -0.14 -4.68 5.66 30.67 0.17 -4.51 16 21 C 0.18 6.58 2.20 45.02 0.10 6.67 16 22 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 23 N -0.73 -35.23 4.33 -322.80 -1.40 -36.63 16 24 C -0.23 -12.23 9.93 84.03 0.83 -11.39 16 25 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 26 C -0.08 -4.25 5.50 84.86 0.47 -3.78 16 27 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16 28 Si 0.97 45.34 29.55 68.60 2.03 47.37 16 29 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 30 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 31 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 32 H 0.07 1.51 6.70 -2.39 -0.02 1.49 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.05 1.79 7.22 -2.39 -0.02 1.78 16 37 H 0.10 2.51 5.71 -2.39 -0.01 2.50 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.18 2.15 7.64 -2.91 -0.02 2.13 16 40 H 0.20 1.06 8.06 -2.91 -0.02 1.03 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.15 3.37 4.03 -67.10 -0.27 3.10 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.37 19.71 7.51 -92.71 -0.70 19.01 16 46 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -69.27 372.32 1.06 -68.21 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: -1.88 Total: 28.51 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 6.20 Total: 5.89 kcal Atomic # 7 Polarization: -128.68 SS G_CDS: -5.23 Total: -133.91 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.06 Total: -16.07 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -69.27 1.06 -68.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037866085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.420 kcal (2) G-P(sol) polarization free energy of solvation -69.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds