Wall clock time and date at job start Wed Apr 1 2020 02:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47473 * 2 1 4 4 H 1.08994 * 109.49603 * 55.06140 * 3 2 1 5 5 C 1.53190 * 109.49564 * 295.00028 * 3 2 1 6 6 N 1.46927 * 108.77612 * 185.41376 * 5 3 2 7 7 C 1.34773 * 120.63009 * 233.63061 * 6 5 3 8 8 O 1.21521 * 119.99944 * 359.59894 * 7 6 5 9 9 C 1.48122 * 119.99922 * 179.59948 * 7 6 5 10 10 C 1.39825 * 119.37232 * 203.76399 * 9 7 6 11 11 C 1.36964 * 119.60205 * 180.02562 * 10 9 7 12 12 C 1.39809 * 118.26126 * 359.97438 * 11 10 9 13 13 N 1.34649 * 135.01156 * 179.97438 * 12 11 10 14 14 N 1.28672 * 109.16355 * 179.97438 * 13 12 11 15 15 N 1.28772 * 111.84338 * 0.02562 * 14 13 12 16 16 H 0.97001 * 125.85520 * 179.97438 * 15 14 13 17 17 C 1.37248 * 108.28302 * 359.97438 * 15 14 13 18 18 N 1.31960 * 134.70607 * 180.33302 * 17 15 14 19 19 C 1.46920 * 118.73663 * 53.60696 * 6 5 3 20 20 C 1.53190 * 108.77900 * 306.38932 * 19 6 5 21 21 C 1.53035 * 109.49645 * 175.16282 * 3 2 1 22 22 H 1.09005 * 109.45985 * 301.33248 * 21 3 2 23 23 N 1.46498 * 109.46445 * 61.29740 * 21 3 2 24 24 C 1.36939 * 120.00061 * 205.00191 * 23 21 3 25 25 H 1.08004 * 119.99837 * 359.97438 * 24 23 21 26 26 C 1.38807 * 119.99936 * 179.97438 * 24 23 21 27 27 N 1.31624 * 120.00147 * 359.97438 * 26 24 23 28 28 Si 1.86799 * 120.00054 * 179.97438 * 26 24 23 29 29 H 1.48493 * 109.47409 * 89.99937 * 28 26 24 30 30 H 1.48506 * 109.47417 * 210.00088 * 28 26 24 31 31 H 1.48508 * 109.47162 * 329.99769 * 28 26 24 32 32 H 1.08997 * 109.46818 * 300.00507 * 1 2 3 33 33 H 1.08996 * 109.47218 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.46528 * 59.99832 * 1 2 3 35 35 H 1.09008 * 109.46943 * 120.00283 * 2 1 3 36 36 H 1.08997 * 109.46818 * 239.99493 * 2 1 3 37 37 H 1.09001 * 109.58693 * 305.20303 * 5 3 2 38 38 H 1.08997 * 109.58766 * 65.48289 * 5 3 2 39 39 H 1.07993 * 120.19731 * 0.02562 * 10 9 7 40 40 H 1.08004 * 120.87183 * 179.97438 * 11 10 9 41 41 H 1.08994 * 109.59037 * 66.18028 * 19 6 5 42 42 H 1.09004 * 109.58445 * 186.46489 * 19 6 5 43 43 H 1.08994 * 109.50278 * 174.58839 * 20 19 6 44 44 H 1.08997 * 109.50161 * 294.65866 * 20 19 6 45 45 H 0.96997 * 119.99740 * 24.99638 * 23 21 3 46 46 H 0.97001 * 119.99688 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6352 2.1279 -1.3088 6 7 2.2417 3.4655 -1.3494 7 6 1.4817 4.5579 -1.5629 8 8 0.2839 4.4413 -1.7314 9 6 2.1065 5.9006 -1.5923 10 6 1.3258 7.0266 -1.3135 11 6 1.8986 8.2704 -1.3399 12 6 3.2589 8.3664 -1.6479 13 7 4.1395 9.3781 -1.7662 14 7 5.2935 8.8998 -2.0748 15 7 5.2681 7.6166 -2.1787 16 1 6.0226 7.0496 -2.4026 17 6 3.9902 7.1887 -1.9183 18 7 3.3962 6.0112 -1.8753 19 6 3.6923 3.5897 -1.1523 20 6 4.0742 2.8879 0.1548 21 6 3.5656 1.4447 0.1216 22 1 3.8574 0.9357 1.0403 23 7 4.1481 0.7483 -1.0281 24 6 5.3861 0.1724 -0.9245 25 1 5.9334 0.2320 0.0047 26 6 5.9378 -0.4879 -2.0137 27 7 5.2706 -0.5610 -3.1460 28 14 7.6269 -1.2729 -1.8727 29 1 7.4834 -2.6766 -1.4098 30 1 8.2936 -1.2549 -3.1996 31 1 8.4468 -0.5112 -0.8965 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3632 0.5139 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.8933 -0.5139 -0.8899 37 1 1.9908 1.5396 -2.1547 38 1 0.5497 2.2151 -1.3550 39 1 0.2775 6.9161 -1.0788 40 1 1.3147 9.1540 -1.1282 41 1 4.2158 3.1206 -1.9853 42 1 3.9646 4.6437 -1.0966 43 1 5.1586 2.8890 0.2650 44 1 3.6225 3.4140 0.9957 45 1 3.6567 0.6951 -1.8627 46 1 5.6560 -1.0227 -3.9070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037866089.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:25 Heat of formation + Delta-G solvation = 120.231728 kcal Electronic energy + Delta-G solvation = -30873.792568 eV Core-core repulsion = 26801.649224 eV Total energy + Delta-G solvation = -4072.143344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.71096 -40.66179 -38.98675 -37.71888 -34.90584 -34.29432 -33.77579 -32.20533 -31.72675 -31.28251 -29.43314 -28.56499 -26.41127 -24.81752 -24.13540 -23.69048 -23.50498 -22.96961 -20.91331 -20.55704 -19.14792 -18.83373 -18.46002 -17.42456 -17.24805 -16.92378 -16.00871 -15.69747 -15.18900 -14.89490 -14.66723 -14.16729 -14.01635 -13.84043 -13.61994 -13.43224 -13.26382 -13.16005 -12.92502 -12.69802 -12.57149 -12.27940 -12.13233 -12.02877 -11.66281 -11.45269 -11.11046 -11.00678 -10.85284 -10.76206 -10.39956 -10.32812 -10.29837 -10.20425 -9.81963 -9.61331 -9.59735 -9.48092 -9.18780 -8.85742 -8.30215 -6.99991 -5.82231 -3.10461 -0.20358 0.61863 1.76379 1.80376 2.58772 2.97468 3.29479 3.38181 3.44015 3.45491 3.47088 3.89207 4.03046 4.35925 4.43002 4.54165 4.94520 4.99586 5.13235 5.24244 5.32046 5.37615 5.49549 5.54577 5.58374 5.65660 5.70854 5.77410 5.83079 5.86304 5.94712 6.06328 6.14033 6.22118 6.27293 6.35316 6.39450 6.43901 6.56122 6.59146 6.73442 6.75912 6.91292 6.97015 7.05034 7.56843 7.65274 7.76885 8.13066 8.36241 9.47976 10.04792 10.39929 11.40095 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.003761 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.327066 B = 7443.481025 C = 9581.327648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.067 0.933 5 C 0.115 3.885 6 N -0.571 5.571 7 C 0.564 3.436 8 O -0.538 6.538 9 C 0.157 3.843 10 C -0.122 4.122 11 C -0.003 4.003 12 C -0.026 4.026 13 N -0.241 5.241 14 N 0.009 4.991 15 N -0.399 5.399 16 H 0.461 0.539 17 C 0.210 3.790 18 N -0.426 5.426 19 C 0.087 3.913 20 C -0.152 4.152 21 C 0.177 3.823 22 H 0.050 0.950 23 N -0.718 5.718 24 C -0.237 4.237 25 H 0.069 0.931 26 C -0.011 4.011 27 N -0.932 5.932 28 Si 0.903 3.097 29 H -0.291 1.291 30 H -0.293 1.293 31 H -0.283 1.283 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.165 0.835 40 H 0.159 0.841 41 H 0.085 0.915 42 H 0.118 0.882 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.168 14.609 5.104 17.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.085 0.915 5 C -0.006 4.006 6 N -0.301 5.301 7 C 0.349 3.651 8 O -0.415 6.415 9 C 0.003 3.997 10 C -0.146 4.146 11 C -0.033 4.033 12 C -0.153 4.153 13 N -0.118 5.118 14 N 0.026 4.974 15 N -0.131 5.131 16 H 0.310 0.690 17 C -0.033 4.033 18 N -0.144 5.144 19 C -0.035 4.035 20 C -0.193 4.193 21 C 0.067 3.933 22 H 0.068 0.932 23 N -0.360 5.360 24 C -0.368 4.368 25 H 0.087 0.913 26 C -0.207 4.207 27 N -0.580 5.580 28 Si 0.734 3.266 29 H -0.218 1.218 30 H -0.219 1.219 31 H -0.209 1.209 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.183 0.817 40 H 0.177 0.823 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.090 0.910 44 H 0.063 0.937 45 H 0.219 0.781 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.240 15.046 4.782 16.977 hybrid contribution 0.633 -1.187 -0.198 1.360 sum -5.608 13.859 4.584 15.638 Atomic orbital electron populations 1.21858 0.96763 1.01094 1.01367 1.21420 0.94304 0.95634 1.03447 1.21747 0.97479 0.96203 0.96810 0.91499 1.21825 0.98888 0.81172 0.98751 1.48053 1.09485 1.05948 1.66584 1.17692 0.85986 0.82862 0.78537 1.90789 1.13730 1.85480 1.51522 1.21385 0.87234 0.95507 0.95568 1.21701 1.02477 0.90693 0.99695 1.20493 0.90107 0.98775 0.93972 1.20671 0.96910 0.90826 1.06925 1.75402 0.95022 1.24626 1.16740 1.78114 1.17679 0.90450 1.11176 1.44728 1.09429 1.06560 1.52364 0.68980 1.20067 0.87385 0.92126 1.03744 1.66793 1.10299 1.22442 1.14824 1.22722 0.77919 1.03706 0.99160 1.22569 1.01639 0.99172 0.95906 1.20238 0.89692 0.90788 0.92577 0.93227 1.42455 1.19026 1.63967 1.10551 1.19206 0.93600 1.26960 0.97050 0.91329 1.24683 0.98480 1.01480 0.96020 1.69649 1.38077 1.47998 1.02269 0.86262 0.84296 0.79407 0.76608 1.21813 1.21917 1.20912 0.93351 0.93137 0.92737 0.91983 0.90440 0.90251 0.89298 0.81741 0.82309 0.89710 0.86563 0.90957 0.93712 0.78116 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 37.16 0.36 -1.62 16 2 C -0.11 -1.68 5.19 -26.73 -0.14 -1.82 16 3 C -0.10 -1.60 2.14 -90.50 -0.19 -1.79 16 4 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 5 C 0.12 1.86 5.02 -3.71 -0.02 1.84 16 6 N -0.57 -9.01 2.97 -173.79 -0.52 -9.53 16 7 C 0.56 8.59 7.60 -12.20 -0.09 8.49 16 8 O -0.54 -9.07 15.95 5.35 0.09 -8.98 16 9 C 0.16 2.01 6.43 -82.93 -0.53 1.48 16 10 C -0.12 -1.20 9.54 -39.45 -0.38 -1.58 16 11 C 0.00 -0.02 10.16 -39.46 -0.40 -0.43 16 12 C -0.03 -0.29 7.38 -84.91 -0.63 -0.92 16 13 N -0.24 -2.91 12.43 32.12 0.40 -2.51 16 14 N 0.01 0.10 13.28 60.35 0.80 0.90 16 15 N -0.40 -3.95 7.06 31.13 0.22 -3.73 16 16 H 0.46 3.18 8.96 -190.26 -1.71 1.47 16 17 C 0.21 2.48 8.56 -156.28 -1.34 1.15 16 18 N -0.43 -5.51 6.42 -8.90 -0.06 -5.56 16 19 C 0.09 1.39 5.72 -3.71 -0.02 1.37 16 20 C -0.15 -2.48 5.78 -26.61 -0.15 -2.63 16 21 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 22 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 23 N -0.72 -16.04 3.72 -53.38 -0.20 -16.24 16 24 C -0.24 -6.05 9.93 -15.06 -0.15 -6.20 16 25 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 26 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 27 N -0.93 -26.60 13.06 55.49 0.72 -25.87 16 28 Si 0.90 21.46 29.55 -169.99 -5.02 16.43 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 30 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 31 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.70 6.69 -51.93 -0.35 0.35 16 35 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 36 H 0.08 1.39 7.69 -51.93 -0.40 0.99 16 37 H 0.08 1.44 6.64 -51.93 -0.34 1.09 16 38 H 0.09 1.40 5.72 -51.93 -0.30 1.10 16 39 H 0.17 1.33 7.79 -52.49 -0.41 0.92 16 40 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.08 1.62 7.74 -51.93 -0.40 1.22 16 42 H 0.12 1.71 4.02 -77.00 -0.31 1.40 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.38 9.23 5.94 -40.82 -0.24 8.98 16 46 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 369.25 15.07 5.56 5.56 Total: -1.00 -30.51 369.25 -9.33 -39.85 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.38 Total: 9.69 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -3.95 Total: 0.00 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: 1.37 Total: -62.55 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.51 -9.33 -39.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037866089.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.079 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds