Wall clock time and date at job start Wed Apr 1 2020 02:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47212 * 2 1 4 4 H 1.08998 * 109.49599 * 305.00519 * 3 2 1 5 5 C 1.53192 * 109.49062 * 65.06982 * 3 2 1 6 6 N 1.46932 * 108.77003 * 174.58596 * 5 3 2 7 7 C 1.34773 * 120.62930 * 126.41507 * 6 5 3 8 8 O 1.21524 * 120.00207 * 352.77926 * 7 6 5 9 9 C 1.48117 * 120.00078 * 172.78292 * 7 6 5 10 10 C 1.39827 * 119.37777 * 164.59973 * 9 7 6 11 11 C 1.36966 * 119.61119 * 179.72363 * 10 9 7 12 12 C 1.39810 * 118.25022 * 0.53702 * 11 10 9 13 13 N 1.34653 * 135.00993 * 179.72943 * 12 11 10 14 14 N 1.28671 * 109.16523 * 180.02562 * 13 12 11 15 15 N 1.28768 * 111.84485 * 359.97438 * 14 13 12 16 16 H 0.96999 * 125.85906 * 180.02562 * 15 14 13 17 17 C 1.37252 * 108.28039 * 359.97438 * 15 14 13 18 18 N 1.31958 * 134.70351 * 179.97438 * 17 15 14 19 19 C 1.46922 * 118.73696 * 306.38649 * 6 5 3 20 20 C 1.53190 * 108.77446 * 53.61607 * 19 6 5 21 21 C 1.53038 * 109.33777 * 305.37394 * 20 19 6 22 22 H 1.08997 * 109.43489 * 301.31670 * 21 20 19 23 23 N 1.46499 * 109.48856 * 181.35733 * 21 20 19 24 24 C 1.36936 * 119.99920 * 84.91487 * 23 21 20 25 25 H 1.07996 * 120.00394 * 359.97438 * 24 23 21 26 26 C 1.38818 * 119.99793 * 180.02562 * 24 23 21 27 27 N 1.31620 * 119.99901 * 0.02562 * 26 24 23 28 28 Si 1.86796 * 119.99843 * 180.02562 * 26 24 23 29 29 H 1.48504 * 109.47146 * 359.97438 * 28 26 24 30 30 H 1.48495 * 109.47149 * 119.99858 * 28 26 24 31 31 H 1.48505 * 109.47102 * 239.99916 * 28 26 24 32 32 H 1.08999 * 109.47802 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47170 * 299.99914 * 1 2 3 34 34 H 1.09000 * 109.47542 * 59.99314 * 1 2 3 35 35 H 1.09007 * 109.46523 * 240.00390 * 2 1 3 36 36 H 1.08998 * 109.47125 * 120.01008 * 2 1 3 37 37 H 1.09002 * 109.58464 * 294.36615 * 5 3 2 38 38 H 1.08992 * 109.59358 * 54.65824 * 5 3 2 39 39 H 1.08001 * 120.19264 * 0.02562 * 10 9 7 40 40 H 1.07998 * 120.87932 * 180.24293 * 11 10 9 41 41 H 1.09005 * 109.58428 * 173.39648 * 19 6 5 42 42 H 1.08994 * 109.59263 * 293.67769 * 19 6 5 43 43 H 1.09001 * 109.50093 * 65.31211 * 20 19 6 44 44 H 1.09001 * 109.49309 * 185.38127 * 20 19 6 45 45 H 0.97002 * 119.99660 * 264.92050 * 23 21 20 46 46 H 0.96998 * 120.00038 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9820 -0.8416 5 6 1.6365 2.1273 1.3096 6 7 2.2430 3.4650 1.3500 7 6 1.4834 4.5571 1.5658 8 8 0.2726 4.4584 1.5983 9 6 2.1242 5.8778 1.7632 10 6 1.3501 7.0378 1.6626 11 6 1.9366 8.2613 1.8499 12 6 3.3064 8.3031 2.1267 13 7 4.2019 9.2818 2.3573 14 7 5.3587 8.7565 2.5612 15 7 5.3212 7.4715 2.4868 16 1 6.0752 6.8732 2.6068 17 6 4.0311 7.0937 2.2098 18 7 3.4212 5.9379 2.0274 19 6 3.6934 3.5892 1.1514 20 6 4.0739 2.8880 -0.1564 21 6 3.5653 1.4449 -0.1242 22 1 4.0000 0.9262 0.7302 23 7 3.9555 0.7615 -1.3598 24 6 5.1937 0.1858 -1.4621 25 1 5.8828 0.2358 -0.6321 26 6 5.5637 -0.4613 -2.6332 27 7 4.7244 -0.5210 -3.6454 28 14 7.2524 -1.2474 -2.7725 29 1 8.0002 -1.0416 -1.5060 30 1 7.1017 -2.7024 -3.0281 31 1 7.9983 -0.6224 -3.8943 32 1 -0.3635 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 1.8932 -0.5138 -0.8901 36 1 1.8933 -0.5140 0.8899 37 1 0.5511 2.2167 1.3558 38 1 1.9909 1.5375 2.1548 39 1 0.2948 6.9692 1.4433 40 1 1.3573 9.1701 1.7808 41 1 3.9653 4.6432 1.0933 42 1 4.2178 3.1221 1.9850 43 1 3.6208 3.4143 -0.9966 44 1 5.1581 2.8897 -0.2679 45 1 3.3368 0.7170 -2.1055 46 1 4.9827 -0.9735 -4.4636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037866090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:28 Heat of formation + Delta-G solvation = 118.555556 kcal Electronic energy + Delta-G solvation = -30379.965001 eV Core-core repulsion = 26307.748973 eV Total energy + Delta-G solvation = -4072.216028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.81372 -40.77512 -39.02177 -37.75406 -35.10036 -34.52194 -33.80090 -32.30659 -31.76489 -31.39272 -29.52687 -28.76256 -26.41021 -24.94423 -24.26149 -23.76790 -23.22522 -22.68056 -20.92189 -20.60138 -19.52931 -19.18037 -18.80571 -17.57805 -17.09640 -17.03536 -16.14350 -15.77164 -15.37714 -15.07547 -14.58455 -14.29857 -13.93024 -13.87426 -13.62348 -13.50827 -13.30832 -13.21241 -13.02600 -12.79684 -12.66770 -12.32113 -12.14524 -12.12464 -11.75371 -11.56066 -11.31658 -10.96476 -10.90700 -10.72673 -10.50277 -10.39210 -10.22692 -10.16573 -9.82111 -9.72195 -9.63906 -9.58410 -9.33711 -8.87445 -8.54591 -6.98595 -5.81044 -3.09526 -0.32905 0.52008 1.64536 1.69143 2.45954 2.80416 3.21832 3.34254 3.38901 3.44542 3.46960 3.76505 3.91701 4.22473 4.33046 4.54282 4.84441 4.90990 5.08313 5.17515 5.26542 5.30725 5.41400 5.42359 5.51795 5.56769 5.60526 5.65905 5.75662 5.83461 5.86005 6.05459 6.09098 6.12222 6.20092 6.32696 6.34740 6.38060 6.43272 6.53268 6.65825 6.81189 6.88041 6.94330 7.03559 7.36173 7.65663 7.66946 7.96099 8.37200 9.48769 10.06374 10.41253 11.41450 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.003156 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.809159 B = 8868.964725 C =10862.816648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.071 0.929 5 C 0.116 3.884 6 N -0.578 5.578 7 C 0.568 3.432 8 O -0.532 6.532 9 C 0.154 3.846 10 C -0.121 4.121 11 C -0.001 4.001 12 C -0.024 4.024 13 N -0.239 5.239 14 N 0.011 4.989 15 N -0.400 5.400 16 H 0.461 0.539 17 C 0.209 3.791 18 N -0.430 5.430 19 C 0.084 3.916 20 C -0.153 4.153 21 C 0.183 3.817 22 H 0.047 0.953 23 N -0.720 5.720 24 C -0.237 4.237 25 H 0.070 0.930 26 C -0.012 4.012 27 N -0.931 5.931 28 Si 0.904 3.096 29 H -0.281 1.281 30 H -0.292 1.292 31 H -0.292 1.292 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.167 0.833 40 H 0.160 0.840 41 H 0.121 0.879 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 14.639 13.567 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.089 0.911 5 C -0.006 4.006 6 N -0.308 5.308 7 C 0.353 3.647 8 O -0.408 6.408 9 C 0.001 3.999 10 C -0.144 4.144 11 C -0.032 4.032 12 C -0.151 4.151 13 N -0.116 5.116 14 N 0.027 4.973 15 N -0.132 5.132 16 H 0.309 0.691 17 C -0.034 4.034 18 N -0.147 5.147 19 C -0.038 4.038 20 C -0.194 4.194 21 C 0.072 3.928 22 H 0.065 0.935 23 N -0.361 5.361 24 C -0.368 4.368 25 H 0.088 0.912 26 C -0.209 4.209 27 N -0.579 5.579 28 Si 0.735 3.265 29 H -0.206 1.206 30 H -0.219 1.219 31 H -0.220 1.220 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.184 0.816 40 H 0.178 0.822 41 H 0.138 0.862 42 H 0.084 0.916 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.218 0.782 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.863 15.020 13.910 21.042 hybrid contribution 0.542 -1.096 -0.649 1.385 sum -4.321 13.924 13.261 19.708 Atomic orbital electron populations 1.21846 0.96752 1.01074 1.01334 1.21453 0.94409 0.95605 1.03523 1.21779 0.97732 0.96317 0.96557 0.91083 1.21887 0.99516 0.80944 0.98243 1.48044 1.09374 1.06164 1.67266 1.17690 0.86180 0.82702 0.78161 1.90800 1.12764 1.84881 1.52377 1.21358 0.87286 0.95351 0.95923 1.21734 1.02772 0.90517 0.99405 1.20527 0.89976 0.99330 0.93358 1.20686 0.96773 0.90756 1.06934 1.75422 0.94659 1.24845 1.16708 1.78127 1.17957 0.89447 1.11731 1.44709 1.08611 1.06772 1.53072 0.69077 1.20052 0.87133 0.92226 1.04000 1.66799 1.09968 1.24408 1.13555 1.22794 0.78198 1.04582 0.98256 1.22719 1.02030 0.99159 0.95507 1.20210 0.90720 0.90666 0.91185 0.93459 1.42418 1.16451 1.64491 1.12720 1.19249 0.91771 1.27244 0.98576 0.91233 1.24723 0.98108 1.01582 0.96441 1.69666 1.35170 1.48392 1.04714 0.86170 0.84055 0.78941 0.77322 1.20628 1.21896 1.21969 0.93159 0.93199 0.92937 0.89745 0.92438 0.88887 0.91181 0.81560 0.82201 0.86185 0.91623 0.92507 0.90750 0.78217 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.67 37.16 0.36 -1.66 16 2 C -0.11 -1.74 5.31 -26.73 -0.14 -1.88 16 3 C -0.10 -1.64 1.92 -90.50 -0.17 -1.81 16 4 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 5 C 0.12 1.60 5.34 -3.71 -0.02 1.58 16 6 N -0.58 -7.89 2.97 -173.78 -0.52 -8.41 16 7 C 0.57 7.70 7.62 -12.21 -0.09 7.60 16 8 O -0.53 -8.18 15.82 5.34 0.08 -8.10 16 9 C 0.15 1.76 6.49 -82.93 -0.54 1.22 16 10 C -0.12 -1.07 9.54 -39.45 -0.38 -1.45 16 11 C 0.00 -0.01 10.16 -39.46 -0.40 -0.41 16 12 C -0.02 -0.25 7.38 -84.90 -0.63 -0.87 16 13 N -0.24 -2.68 12.43 32.12 0.40 -2.28 16 14 N 0.01 0.11 13.28 60.35 0.80 0.91 16 15 N -0.40 -3.34 7.06 31.13 0.22 -3.12 16 16 H 0.46 2.28 8.96 -190.26 -1.71 0.57 16 17 C 0.21 2.16 8.56 -156.28 -1.34 0.82 16 18 N -0.43 -4.74 6.31 -8.90 -0.06 -4.80 16 19 C 0.08 1.12 5.83 -3.71 -0.02 1.10 16 20 C -0.15 -2.53 5.66 -26.61 -0.15 -2.68 16 21 C 0.18 3.34 2.19 -67.89 -0.15 3.20 16 22 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 23 N -0.72 -16.87 4.33 -53.39 -0.23 -17.10 16 24 C -0.24 -6.23 9.93 -15.06 -0.15 -6.38 16 25 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 26 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 27 N -0.93 -27.28 13.06 55.49 0.72 -26.56 16 28 Si 0.90 21.76 29.55 -169.99 -5.02 16.74 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 31 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.60 6.70 -51.93 -0.35 0.25 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.59 7.22 -51.93 -0.37 1.22 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.29 5.72 -51.93 -0.30 0.99 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.17 1.23 7.69 -52.49 -0.40 0.83 16 40 H 0.16 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.12 1.50 4.21 -73.74 -0.31 1.19 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.38 9.75 7.51 -40.82 -0.31 9.44 16 46 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -31.67 372.66 -9.41 -41.08 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -7.52 Total: 8.09 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -3.92 Total: -2.08 kcal Atomic # 7 Polarization: -62.69 SS G_CDS: 1.34 Total: -61.35 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.67 -9.41 -41.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037866090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.638 kcal (2) G-P(sol) polarization free energy of solvation -31.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds