Wall clock time and date at job start Wed Apr 1 2020 02:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47212 * 2 1 4 4 H 1.08998 * 109.49599 * 305.00519 * 3 2 1 5 5 C 1.53192 * 109.49062 * 65.06982 * 3 2 1 6 6 N 1.46932 * 108.77003 * 174.58596 * 5 3 2 7 7 C 1.34773 * 120.62930 * 126.41507 * 6 5 3 8 8 O 1.21524 * 120.00207 * 352.77926 * 7 6 5 9 9 C 1.48117 * 120.00078 * 172.78292 * 7 6 5 10 10 C 1.39827 * 119.37777 * 164.59973 * 9 7 6 11 11 C 1.36966 * 119.61119 * 179.72363 * 10 9 7 12 12 C 1.39810 * 118.25022 * 0.53702 * 11 10 9 13 13 N 1.34653 * 135.00993 * 179.72943 * 12 11 10 14 14 N 1.28671 * 109.16523 * 180.02562 * 13 12 11 15 15 N 1.28768 * 111.84485 * 359.97438 * 14 13 12 16 16 H 0.96999 * 125.85906 * 180.02562 * 15 14 13 17 17 C 1.37252 * 108.28039 * 359.97438 * 15 14 13 18 18 N 1.31958 * 134.70351 * 179.97438 * 17 15 14 19 19 C 1.46922 * 118.73696 * 306.38649 * 6 5 3 20 20 C 1.53190 * 108.77446 * 53.61607 * 19 6 5 21 21 C 1.53038 * 109.33777 * 305.37394 * 20 19 6 22 22 H 1.08997 * 109.43489 * 301.31670 * 21 20 19 23 23 N 1.46499 * 109.48856 * 181.35733 * 21 20 19 24 24 C 1.36936 * 119.99920 * 84.91487 * 23 21 20 25 25 H 1.07996 * 120.00394 * 359.97438 * 24 23 21 26 26 C 1.38818 * 119.99793 * 180.02562 * 24 23 21 27 27 N 1.31620 * 119.99901 * 0.02562 * 26 24 23 28 28 Si 1.86796 * 119.99843 * 180.02562 * 26 24 23 29 29 H 1.48504 * 109.47146 * 359.97438 * 28 26 24 30 30 H 1.48495 * 109.47149 * 119.99858 * 28 26 24 31 31 H 1.48505 * 109.47102 * 239.99916 * 28 26 24 32 32 H 1.08999 * 109.47802 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47170 * 299.99914 * 1 2 3 34 34 H 1.09000 * 109.47542 * 59.99314 * 1 2 3 35 35 H 1.09007 * 109.46523 * 240.00390 * 2 1 3 36 36 H 1.08998 * 109.47125 * 120.01008 * 2 1 3 37 37 H 1.09002 * 109.58464 * 294.36615 * 5 3 2 38 38 H 1.08992 * 109.59358 * 54.65824 * 5 3 2 39 39 H 1.08001 * 120.19264 * 0.02562 * 10 9 7 40 40 H 1.07998 * 120.87932 * 180.24293 * 11 10 9 41 41 H 1.09005 * 109.58428 * 173.39648 * 19 6 5 42 42 H 1.08994 * 109.59263 * 293.67769 * 19 6 5 43 43 H 1.09001 * 109.50093 * 65.31211 * 20 19 6 44 44 H 1.09001 * 109.49309 * 185.38127 * 20 19 6 45 45 H 0.97002 * 119.99660 * 264.92050 * 23 21 20 46 46 H 0.96998 * 120.00038 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9820 -0.8416 5 6 1.6365 2.1273 1.3096 6 7 2.2430 3.4650 1.3500 7 6 1.4834 4.5571 1.5658 8 8 0.2726 4.4584 1.5983 9 6 2.1242 5.8778 1.7632 10 6 1.3501 7.0378 1.6626 11 6 1.9366 8.2613 1.8499 12 6 3.3064 8.3031 2.1267 13 7 4.2019 9.2818 2.3573 14 7 5.3587 8.7565 2.5612 15 7 5.3212 7.4715 2.4868 16 1 6.0752 6.8732 2.6068 17 6 4.0311 7.0937 2.2098 18 7 3.4212 5.9379 2.0274 19 6 3.6934 3.5892 1.1514 20 6 4.0739 2.8880 -0.1564 21 6 3.5653 1.4449 -0.1242 22 1 4.0000 0.9262 0.7302 23 7 3.9555 0.7615 -1.3598 24 6 5.1937 0.1858 -1.4621 25 1 5.8828 0.2358 -0.6321 26 6 5.5637 -0.4613 -2.6332 27 7 4.7244 -0.5210 -3.6454 28 14 7.2524 -1.2474 -2.7725 29 1 8.0002 -1.0416 -1.5060 30 1 7.1017 -2.7024 -3.0281 31 1 7.9983 -0.6224 -3.8943 32 1 -0.3635 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8899 35 1 1.8932 -0.5138 -0.8901 36 1 1.8933 -0.5140 0.8899 37 1 0.5511 2.2167 1.3558 38 1 1.9909 1.5375 2.1548 39 1 0.2948 6.9692 1.4433 40 1 1.3573 9.1701 1.7808 41 1 3.9653 4.6432 1.0933 42 1 4.2178 3.1221 1.9850 43 1 3.6208 3.4143 -0.9966 44 1 5.1581 2.8897 -0.2679 45 1 3.3368 0.7170 -2.1055 46 1 4.9827 -0.9735 -4.4636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037866090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:27 Heat of formation + Delta-G solvation = 98.181973 kcal Electronic energy + Delta-G solvation = -30380.848466 eV Core-core repulsion = 26307.748973 eV Total energy + Delta-G solvation = -4073.099493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.56156 -41.78285 -40.02048 -38.95210 -36.33697 -35.54864 -35.18944 -33.49170 -33.01468 -32.23037 -31.09351 -30.00801 -27.49374 -26.22121 -25.37631 -24.81030 -24.39606 -23.77669 -22.25029 -21.68290 -20.81283 -19.97823 -19.60960 -19.09964 -18.49429 -17.80754 -17.24844 -16.86093 -16.55471 -16.37306 -15.83223 -15.60258 -15.38002 -14.96918 -14.75061 -14.65993 -14.48545 -14.32384 -14.30602 -13.87640 -13.60356 -13.53829 -13.21455 -13.06594 -12.90427 -12.86041 -12.78406 -12.56457 -12.51324 -12.12763 -12.03914 -11.84265 -11.58873 -11.54901 -11.47478 -11.09286 -10.94740 -10.47102 -10.41314 -10.11588 -9.70289 -8.94014 -7.91353 -5.18501 -1.11083 -0.19581 0.84499 0.98136 1.47389 1.47916 1.55277 1.57202 1.80390 2.42592 2.55237 2.58089 2.95466 3.16887 3.38200 3.42466 3.64106 3.78581 3.80679 4.00260 4.06133 4.18586 4.23814 4.34553 4.35875 4.43162 4.52800 4.64155 4.70390 4.73855 4.80300 4.80563 4.88417 5.02098 5.05944 5.06750 5.15482 5.21637 5.31265 5.37942 5.46270 5.51725 5.54841 5.58668 5.67882 6.10113 6.29057 6.30689 6.88970 6.92925 7.36868 8.13330 8.36499 9.32345 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011441 B = 0.003156 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.809159 B = 8868.964725 C =10862.816648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.093 4.093 4 H 0.053 0.947 5 C 0.123 3.877 6 N -0.584 5.584 7 C 0.569 3.431 8 O -0.551 6.551 9 C 0.139 3.861 10 C -0.116 4.116 11 C 0.014 3.986 12 C -0.034 4.034 13 N -0.259 5.259 14 N 0.007 4.993 15 N -0.384 5.384 16 H 0.473 0.527 17 C 0.199 3.801 18 N -0.438 5.438 19 C 0.097 3.903 20 C -0.143 4.143 21 C 0.178 3.822 22 H 0.047 0.953 23 N -0.731 5.731 24 C -0.228 4.228 25 H 0.077 0.923 26 C -0.076 4.076 27 N -0.970 5.970 28 Si 0.965 3.035 29 H -0.265 1.265 30 H -0.297 1.297 31 H -0.298 1.298 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.183 0.817 40 H 0.195 0.805 41 H 0.134 0.866 42 H 0.079 0.921 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.370 0.630 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.928 15.992 15.610 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.113 4.113 4 H 0.072 0.928 5 C 0.001 3.999 6 N -0.313 5.313 7 C 0.355 3.645 8 O -0.429 6.429 9 C -0.013 4.013 10 C -0.140 4.140 11 C -0.016 4.016 12 C -0.161 4.161 13 N -0.135 5.135 14 N 0.024 4.976 15 N -0.118 5.118 16 H 0.325 0.675 17 C -0.045 4.045 18 N -0.156 5.156 19 C -0.025 4.025 20 C -0.184 4.184 21 C 0.070 3.930 22 H 0.065 0.935 23 N -0.370 5.370 24 C -0.360 4.360 25 H 0.095 0.905 26 C -0.268 4.268 27 N -0.621 5.621 28 Si 0.796 3.204 29 H -0.189 1.189 30 H -0.225 1.225 31 H -0.226 1.226 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.200 0.800 40 H 0.212 0.788 41 H 0.151 0.849 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.081 0.919 45 H 0.202 0.798 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.976 16.396 16.016 23.454 hybrid contribution 0.569 -1.444 -1.217 1.973 sum -4.407 14.952 14.799 21.494 Atomic orbital electron populations 1.21780 0.94664 1.01931 1.01905 1.21354 0.96224 0.95003 1.01927 1.21625 0.95589 0.96639 0.97403 0.92822 1.21805 0.99812 0.81184 0.97148 1.48078 1.09422 1.06304 1.67541 1.17957 0.85954 0.83247 0.77330 1.90785 1.13595 1.85333 1.53186 1.21174 0.87817 0.94960 0.97388 1.21884 1.03291 0.89898 0.98878 1.20902 0.89220 1.00244 0.91264 1.21049 0.97704 0.90473 1.06902 1.75410 0.95047 1.25402 1.17672 1.78078 1.17854 0.90034 1.11635 1.44742 1.08653 1.06493 1.51944 0.67473 1.20125 0.87742 0.92119 1.04531 1.66561 1.10023 1.24905 1.14064 1.22723 0.78233 1.05051 0.96525 1.22521 1.00970 0.97862 0.97003 1.20441 0.92609 0.91089 0.88898 0.93477 1.42595 1.15451 1.64966 1.13953 1.19617 0.92567 1.25563 0.98265 0.90541 1.25461 1.01483 1.03285 0.96575 1.69822 1.36993 1.50164 1.05154 0.85180 0.80339 0.77406 0.77506 1.18889 1.22478 1.22585 0.92213 0.91371 0.93549 0.93616 0.91644 0.88504 0.89524 0.80018 0.78807 0.84938 0.90245 0.94214 0.91917 0.79785 0.94314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.67 71.98 0.70 -3.01 16 2 C -0.11 -3.33 5.31 30.59 0.16 -3.16 16 3 C -0.09 -2.91 1.92 -10.72 -0.02 -2.93 16 4 H 0.05 1.87 8.14 -2.39 -0.02 1.86 16 5 C 0.12 3.18 5.34 86.36 0.46 3.64 16 6 N -0.58 -15.01 2.97 -822.01 -2.44 -17.46 16 7 C 0.57 14.46 7.62 86.87 0.66 15.12 16 8 O -0.55 -16.03 15.82 -3.79 -0.06 -16.09 16 9 C 0.14 2.89 6.49 42.05 0.27 3.17 16 10 C -0.12 -1.77 9.54 22.36 0.21 -1.55 16 11 C 0.01 0.18 10.16 22.35 0.23 0.41 16 12 C -0.03 -0.62 7.38 39.83 0.29 -0.32 16 13 N -0.26 -5.31 12.43 -52.29 -0.65 -5.96 16 14 N 0.01 0.14 13.28 37.02 0.49 0.63 16 15 N -0.38 -5.74 7.06 -55.41 -0.39 -6.13 16 16 H 0.47 3.83 8.96 -219.84 -1.97 1.86 16 17 C 0.20 3.71 8.56 134.30 1.15 4.86 16 18 N -0.44 -8.81 6.31 -182.08 -1.15 -9.96 16 19 C 0.10 2.43 5.83 86.36 0.50 2.94 16 20 C -0.14 -4.68 5.66 30.67 0.17 -4.51 16 21 C 0.18 6.54 2.19 45.02 0.10 6.64 16 22 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 23 N -0.73 -35.05 4.33 -322.82 -1.40 -36.45 16 24 C -0.23 -12.10 9.93 84.03 0.83 -11.27 16 25 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 26 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 27 N -0.97 -58.58 13.06 21.65 0.28 -58.29 16 28 Si 0.97 45.29 29.55 68.60 2.03 47.32 16 29 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 30 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 31 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.07 1.49 6.70 -2.39 -0.02 1.48 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.78 7.22 -2.38 -0.02 1.77 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 2.50 5.72 -2.39 -0.01 2.48 16 38 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.18 2.19 7.69 -2.91 -0.02 2.16 16 40 H 0.19 1.12 8.06 -2.91 -0.02 1.09 16 41 H 0.13 3.10 4.21 -45.46 -0.19 2.91 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 44 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.37 19.63 7.51 -92.71 -0.70 18.93 16 46 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -69.13 372.66 1.11 -68.02 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: -1.80 Total: 28.14 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: 6.19 Total: 6.23 kcal Atomic # 7 Polarization: -128.37 SS G_CDS: -5.26 Total: -133.62 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.06 Total: -16.09 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -69.13 1.11 -68.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037866090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.204 kcal (2) G-P(sol) polarization free energy of solvation -69.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds