Wall clock time and date at job start Wed Apr 1 2020 02:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46873 * 2 1 4 4 H 1.09001 * 109.49156 * 304.93160 * 3 2 1 5 5 C 1.53193 * 109.50105 * 64.99274 * 3 2 1 6 6 N 1.46927 * 108.77600 * 174.58971 * 5 3 2 7 7 C 1.34768 * 120.63008 * 126.37013 * 6 5 3 8 8 O 1.21522 * 120.00296 * 0.22839 * 7 6 5 9 9 C 1.48129 * 119.99767 * 180.22623 * 7 6 5 10 10 C 1.39819 * 119.37061 * 158.21066 * 9 7 6 11 11 C 1.36966 * 119.60409 * 180.27752 * 10 9 7 12 12 C 1.39816 * 118.25483 * 359.46381 * 11 10 9 13 13 N 1.34652 * 135.00959 * 180.24916 * 12 11 10 14 14 N 1.28665 * 109.16102 * 180.02562 * 13 12 11 15 15 N 1.28771 * 111.84970 * 0.02562 * 14 13 12 16 16 H 0.96995 * 125.86056 * 180.02562 * 15 14 13 17 17 C 1.37249 * 108.27598 * 359.97438 * 15 14 13 18 18 N 1.31959 * 134.70382 * 179.97438 * 17 15 14 19 19 C 1.46930 * 118.73545 * 306.64514 * 6 5 3 20 20 C 1.52762 * 109.00973 * 53.31051 * 19 6 5 21 21 C 1.53039 * 109.38324 * 305.58654 * 20 19 6 22 22 H 1.08997 * 109.46357 * 181.25765 * 21 20 19 23 23 N 1.46503 * 109.45990 * 301.22277 * 21 20 19 24 24 C 1.36942 * 119.99664 * 275.06301 * 23 21 20 25 25 H 1.08003 * 120.00024 * 0.02562 * 24 23 21 26 26 C 1.38814 * 119.99544 * 179.97438 * 24 23 21 27 27 N 1.31615 * 120.00253 * 0.02562 * 26 24 23 28 28 Si 1.86803 * 119.99486 * 180.02562 * 26 24 23 29 29 H 1.48502 * 109.46973 * 90.00166 * 28 26 24 30 30 H 1.48499 * 109.46816 * 209.99986 * 28 26 24 31 31 H 1.48501 * 109.47314 * 329.99956 * 28 26 24 32 32 H 1.08998 * 109.46916 * 60.00835 * 1 2 3 33 33 H 1.09007 * 109.46901 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47957 * 300.00419 * 1 2 3 35 35 H 1.08995 * 109.47526 * 239.99266 * 2 1 3 36 36 H 1.08998 * 109.46916 * 119.99165 * 2 1 3 37 37 H 1.09001 * 109.58462 * 54.80020 * 5 3 2 38 38 H 1.08999 * 109.70313 * 294.44573 * 5 3 2 39 39 H 1.07998 * 120.20048 * 359.97438 * 10 9 7 40 40 H 1.08001 * 120.87681 * 179.74021 * 11 10 9 41 41 H 1.08997 * 109.58692 * 173.14539 * 19 6 5 42 42 H 1.09002 * 109.58231 * 293.56714 * 19 6 5 43 43 H 1.08997 * 109.56283 * 185.55119 * 20 19 6 44 44 H 1.09002 * 109.35939 * 65.49592 * 20 19 6 45 45 H 0.96999 * 120.00340 * 95.06712 * 23 21 20 46 46 H 0.97000 * 119.99726 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9815 -0.8424 5 6 1.6349 2.1281 1.3087 6 7 2.2412 3.4658 1.3491 7 6 1.4812 4.5581 1.5625 8 8 0.2829 4.4417 1.7278 9 6 2.1064 5.9005 1.5956 10 6 1.3179 7.0303 1.3575 11 6 1.8923 8.2735 1.3813 12 6 3.2598 8.3657 1.6573 13 7 4.1432 9.3760 1.7672 14 7 5.3041 8.8939 2.0414 15 7 5.2813 7.6093 2.1283 16 1 6.0410 7.0396 2.3262 17 6 3.9974 7.1848 1.8939 18 7 3.4013 6.0082 1.8546 19 6 3.6911 3.5906 1.1465 20 6 4.0740 2.8881 -0.1549 21 6 3.5655 1.4450 -0.1217 22 1 3.8574 0.9359 -1.0402 23 7 4.1479 0.7487 1.0283 24 6 5.3860 0.1729 0.9248 25 1 5.9333 0.2324 -0.0044 26 6 5.9380 -0.4864 2.0145 27 7 5.2712 -0.5585 3.1470 28 14 7.6273 -1.2713 1.8736 29 1 8.6661 -0.2831 2.2605 30 1 7.7031 -2.4482 2.7760 31 1 7.8556 -1.7065 0.4723 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3635 0.5139 0.8899 35 1 1.8934 -0.5139 -0.8899 36 1 1.8933 -0.5137 0.8901 37 1 1.9905 1.5399 2.1546 38 1 0.5496 2.2173 1.3562 39 1 0.2632 6.9231 1.1512 40 1 1.3034 9.1598 1.1961 41 1 3.9621 4.6446 1.0846 42 1 4.2179 3.1241 1.9790 43 1 5.1584 2.8893 -0.2650 44 1 3.6218 3.4139 -0.9959 45 1 3.6565 0.6955 1.8629 46 1 5.6569 -1.0196 3.9083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037866091.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:31 Heat of formation + Delta-G solvation = 120.705275 kcal Electronic energy + Delta-G solvation = -30877.862956 eV Core-core repulsion = 26805.740147 eV Total energy + Delta-G solvation = -4072.122809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.71251 -40.66607 -38.98915 -37.72198 -34.91227 -34.29278 -33.77678 -32.20602 -31.73331 -31.28238 -29.45111 -28.56309 -26.41136 -24.82035 -24.13406 -23.68604 -23.50189 -22.96852 -20.91693 -20.55758 -19.14749 -18.83323 -18.46083 -17.41632 -17.24493 -16.92581 -16.00504 -15.68784 -15.20168 -14.89666 -14.66909 -14.17645 -14.01597 -13.84330 -13.62026 -13.43489 -13.26268 -13.15965 -12.92358 -12.69930 -12.57185 -12.28526 -12.13288 -12.02864 -11.66173 -11.45318 -11.10460 -11.01619 -10.84311 -10.76878 -10.39874 -10.32325 -10.29704 -10.19849 -9.82215 -9.61650 -9.59605 -9.48214 -9.17609 -8.84274 -8.30195 -6.99955 -5.82193 -3.10387 -0.20661 0.61865 1.76309 1.80326 2.58891 2.97580 3.30300 3.37848 3.44285 3.45613 3.47089 3.88977 4.02925 4.35973 4.42923 4.54197 4.94380 4.99754 5.13455 5.24243 5.31990 5.37679 5.49660 5.54628 5.58823 5.65834 5.71384 5.77705 5.83599 5.86276 5.95222 6.06425 6.14296 6.22059 6.27528 6.35417 6.39604 6.44515 6.56491 6.59248 6.73710 6.76348 6.91424 6.97208 7.05014 7.57132 7.65323 7.76888 8.13271 8.36262 9.48017 10.04858 10.39995 11.40147 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010352 B = 0.003764 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.075573 B = 7437.915844 C = 9576.234931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.067 0.933 5 C 0.115 3.885 6 N -0.571 5.571 7 C 0.564 3.436 8 O -0.538 6.538 9 C 0.157 3.843 10 C -0.122 4.122 11 C -0.003 4.003 12 C -0.026 4.026 13 N -0.241 5.241 14 N 0.009 4.991 15 N -0.399 5.399 16 H 0.461 0.539 17 C 0.210 3.790 18 N -0.426 5.426 19 C 0.085 3.915 20 C -0.152 4.152 21 C 0.177 3.823 22 H 0.050 0.950 23 N -0.718 5.718 24 C -0.237 4.237 25 H 0.069 0.931 26 C -0.010 4.010 27 N -0.931 5.931 28 Si 0.903 3.097 29 H -0.292 1.292 30 H -0.292 1.292 31 H -0.283 1.283 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.165 0.835 40 H 0.159 0.841 41 H 0.120 0.880 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.044 0.956 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.188 14.589 -5.103 17.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.085 0.915 5 C -0.007 4.007 6 N -0.300 5.300 7 C 0.349 3.651 8 O -0.415 6.415 9 C 0.003 3.997 10 C -0.145 4.145 11 C -0.034 4.034 12 C -0.153 4.153 13 N -0.118 5.118 14 N 0.026 4.974 15 N -0.131 5.131 16 H 0.310 0.690 17 C -0.034 4.034 18 N -0.143 5.143 19 C -0.037 4.037 20 C -0.193 4.193 21 C 0.067 3.933 22 H 0.068 0.932 23 N -0.360 5.360 24 C -0.368 4.368 25 H 0.087 0.913 26 C -0.207 4.207 27 N -0.580 5.580 28 Si 0.734 3.266 29 H -0.219 1.219 30 H -0.219 1.219 31 H -0.209 1.209 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.183 0.817 40 H 0.177 0.823 41 H 0.136 0.864 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.063 0.937 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.263 15.009 -4.805 16.958 hybrid contribution 0.643 -1.171 0.204 1.351 sum -5.620 13.838 -4.601 15.628 Atomic orbital electron populations 1.21859 0.96763 1.01093 1.01367 1.21418 0.94301 0.95633 1.03446 1.21746 0.97478 0.96206 0.96801 0.91507 1.21832 0.98882 0.81189 0.98752 1.48055 1.09531 1.05945 1.66500 1.17688 0.85981 0.82855 0.78564 1.90788 1.13683 1.85465 1.51611 1.21391 0.87209 0.95500 0.95623 1.21703 1.02517 0.90652 0.99669 1.20498 0.90078 0.98829 0.93949 1.20674 0.96796 0.90787 1.07066 1.75402 0.94794 1.24658 1.16935 1.78110 1.17714 0.90342 1.11247 1.44728 1.08949 1.06489 1.52913 0.68977 1.20077 0.87189 0.92138 1.03947 1.66804 1.10408 1.22506 1.14584 1.22682 0.77957 1.03868 0.99170 1.22497 1.01641 0.99181 0.95988 1.20238 0.89692 0.90794 0.92579 0.93227 1.42457 1.18999 1.63991 1.10553 1.19208 0.93572 1.26991 0.97050 0.91327 1.24683 0.98458 1.01490 0.96027 1.69644 1.37993 1.48106 1.02244 0.86261 0.84476 0.78782 0.77060 1.21911 1.21875 1.20861 0.93354 0.93140 0.92737 0.91981 0.90440 0.90251 0.89302 0.81712 0.82307 0.86366 0.89749 0.90927 0.93749 0.78115 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 37.16 0.36 -1.62 16 2 C -0.11 -1.69 5.19 -26.73 -0.14 -1.82 16 3 C -0.10 -1.60 2.14 -90.50 -0.19 -1.79 16 4 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 5 C 0.12 1.86 5.03 -3.71 -0.02 1.84 16 6 N -0.57 -9.02 2.98 -174.03 -0.52 -9.53 16 7 C 0.56 8.58 7.61 -12.20 -0.09 8.49 16 8 O -0.54 -9.06 15.91 5.35 0.09 -8.98 16 9 C 0.16 2.01 6.45 -82.93 -0.54 1.47 16 10 C -0.12 -1.20 9.54 -39.45 -0.38 -1.57 16 11 C 0.00 -0.03 10.16 -39.45 -0.40 -0.43 16 12 C -0.03 -0.29 7.38 -84.90 -0.63 -0.92 16 13 N -0.24 -2.91 12.43 32.12 0.40 -2.51 16 14 N 0.01 0.10 13.28 60.35 0.80 0.90 16 15 N -0.40 -3.95 7.06 31.13 0.22 -3.73 16 16 H 0.46 3.18 8.96 -190.26 -1.71 1.48 16 17 C 0.21 2.48 8.56 -156.28 -1.34 1.14 16 18 N -0.43 -5.49 6.37 -8.90 -0.06 -5.55 16 19 C 0.09 1.36 5.69 -3.93 -0.02 1.34 16 20 C -0.15 -2.48 5.76 -26.83 -0.15 -2.64 16 21 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 22 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 23 N -0.72 -16.05 3.72 -53.38 -0.20 -16.24 16 24 C -0.24 -6.05 9.93 -15.06 -0.15 -6.20 16 25 H 0.07 1.73 7.83 -52.48 -0.41 1.31 16 26 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 27 N -0.93 -26.60 13.06 55.49 0.72 -25.88 16 28 Si 0.90 21.46 29.55 -169.99 -5.02 16.43 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 31 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.70 6.70 -51.93 -0.35 0.35 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.39 7.69 -51.93 -0.40 0.99 16 37 H 0.08 1.44 6.64 -51.93 -0.34 1.09 16 38 H 0.09 1.40 5.72 -51.93 -0.30 1.10 16 39 H 0.17 1.34 7.77 -52.49 -0.41 0.93 16 40 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 1.73 3.99 -79.36 -0.32 1.42 16 42 H 0.08 1.61 7.74 -51.93 -0.40 1.21 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 44 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.38 9.23 5.94 -40.82 -0.24 8.99 16 46 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -30.51 369.11 -9.35 -39.86 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.39 Total: 9.73 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -3.96 Total: -0.05 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: 1.37 Total: -62.55 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.51 -9.35 -39.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037866091.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.562 kcal (2) G-P(sol) polarization free energy of solvation -30.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds