Wall clock time and date at job start Wed Apr 1 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47284 * 2 1 4 4 H 1.08998 * 109.49596 * 304.93771 * 3 2 1 5 5 C 1.53192 * 109.49461 * 65.00301 * 3 2 1 6 6 N 1.46928 * 108.77698 * 174.58920 * 5 3 2 7 7 C 1.34770 * 120.63220 * 126.40595 * 6 5 3 8 8 O 1.21569 * 120.00249 * 354.16715 * 7 6 5 9 9 C 1.47696 * 119.99780 * 174.16467 * 7 6 5 10 10 C 1.41593 * 120.03441 * 318.67312 * 9 7 6 11 11 C 1.35788 * 119.54868 * 179.70143 * 10 9 7 12 12 C 1.40853 * 119.38628 * 0.60553 * 11 10 9 13 13 N 1.32492 * 133.41286 * 179.70607 * 12 11 10 14 14 N 1.28526 * 110.24269 * 179.97438 * 13 12 11 15 15 N 1.28988 * 110.84587 * 0.02562 * 14 13 12 16 16 N 1.36923 * 119.93843 * 359.66657 * 12 11 10 17 17 C 1.35506 * 120.84127 * 0.02562 * 16 12 11 18 18 C 1.46925 * 118.73630 * 306.39245 * 6 5 3 19 19 C 1.53199 * 108.77733 * 53.60274 * 18 6 5 20 20 C 1.53035 * 109.31154 * 305.36595 * 19 18 6 21 21 H 1.08997 * 109.46339 * 301.34327 * 20 19 18 22 22 N 1.46503 * 109.45788 * 181.38249 * 20 19 18 23 23 C 1.36940 * 119.99668 * 84.93317 * 22 20 19 24 24 H 1.07999 * 120.00439 * 0.02562 * 23 22 20 25 25 C 1.38815 * 119.99938 * 179.97438 * 23 22 20 26 26 N 1.31614 * 119.99962 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 119.99935 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47188 * 60.00136 * 27 25 23 29 29 H 1.48502 * 109.47210 * 180.02562 * 27 25 23 30 30 H 1.48499 * 109.47319 * 300.00505 * 27 25 23 31 31 H 1.08998 * 109.47107 * 59.99777 * 1 2 3 32 32 H 1.09003 * 109.46835 * 299.99845 * 1 2 3 33 33 H 1.08998 * 109.46986 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47538 * 119.99914 * 2 1 3 35 35 H 1.08997 * 109.47460 * 239.99940 * 2 1 3 36 36 H 1.09009 * 109.58549 * 294.37317 * 5 3 2 37 37 H 1.08999 * 109.59236 * 54.79715 * 5 3 2 38 38 H 1.07998 * 120.22528 * 359.97438 * 10 9 7 39 39 H 1.08002 * 120.30160 * 180.26672 * 11 10 9 40 40 H 1.08001 * 119.82405 * 180.02562 * 17 16 12 41 41 H 1.09002 * 109.58851 * 173.39766 * 18 6 5 42 42 H 1.09006 * 109.58356 * 293.81679 * 18 6 5 43 43 H 1.09000 * 109.49338 * 65.32464 * 19 18 6 44 44 H 1.09005 * 109.49097 * 185.38411 * 19 18 6 45 45 H 0.96997 * 120.00451 * 264.93682 * 22 20 19 46 46 H 0.97000 * 120.00307 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6351 2.1279 1.3088 6 7 2.2415 3.4656 1.3495 7 6 1.4816 4.5578 1.5638 8 8 0.2716 4.4550 1.6200 9 6 2.1190 5.8797 1.7304 10 6 3.3010 6.0046 2.4999 11 6 3.8821 7.2237 2.6415 12 6 3.2908 8.3465 2.0303 13 7 3.6061 9.6327 1.9896 14 7 2.7439 10.2800 1.2901 15 7 1.8316 9.4880 0.8382 16 7 2.1444 8.2002 1.2960 17 6 1.5652 6.9843 1.1472 18 6 3.6922 3.5899 1.1523 19 6 4.0741 2.8879 -0.1548 20 6 3.5656 1.4449 -0.1216 21 1 3.9989 0.9267 0.7338 22 7 3.9578 0.7608 -1.3563 23 6 5.1962 0.1850 -1.4562 24 1 5.8836 0.2348 -0.6248 25 6 5.5676 -0.4637 -2.6259 26 7 4.7297 -0.5249 -3.6390 27 14 7.2572 -1.2486 -2.7625 28 1 7.4064 -2.2883 -1.7128 29 1 7.4067 -1.8719 -4.1021 30 1 8.3020 -0.2090 -2.5814 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.8934 -0.5138 0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 0.5496 2.2173 1.3539 37 1 1.9908 1.5397 2.1547 38 1 3.7399 5.1355 2.9672 39 1 4.7863 7.3322 3.2221 40 1 0.6613 6.8877 0.5640 41 1 3.9641 4.6438 1.0941 42 1 4.2156 3.1208 1.9854 43 1 3.6219 3.4139 -0.9957 44 1 5.1585 2.8897 -0.2652 45 1 3.3403 0.7157 -2.1030 46 1 4.9891 -0.9786 -4.4563 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037876524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:34 Heat of formation + Delta-G solvation = 129.709052 kcal Electronic energy + Delta-G solvation = -30208.832215 eV Core-core repulsion = 26137.099839 eV Total energy + Delta-G solvation = -4071.732376 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.82885 -40.90422 -38.93054 -37.87335 -35.23712 -34.46490 -33.92169 -32.59811 -31.87906 -31.03892 -29.70961 -28.93279 -26.36128 -25.04924 -24.76692 -23.92602 -23.27820 -22.95105 -21.06991 -20.61463 -19.66812 -19.17395 -18.00926 -17.42192 -17.22627 -17.06787 -16.54612 -15.69408 -15.45246 -15.08803 -14.92214 -14.26804 -14.15339 -13.96854 -13.85856 -13.51128 -13.46612 -13.34549 -13.18763 -12.95879 -12.83691 -12.36998 -12.25622 -12.25239 -11.89776 -11.72587 -11.48470 -11.43846 -11.04975 -10.96989 -10.84535 -10.63655 -10.50313 -10.34092 -10.28439 -10.19851 -9.84061 -9.73586 -9.15982 -9.00410 -8.78532 -7.07918 -5.87162 -3.16700 -0.28734 -0.03966 1.15204 1.57662 2.20035 2.55534 2.79467 3.18619 3.35684 3.40708 3.42287 3.56662 3.87402 3.92547 4.32742 4.38702 4.48405 4.75864 4.81583 5.01114 5.04498 5.07456 5.11089 5.15214 5.19709 5.27925 5.34012 5.44129 5.48284 5.51074 5.53825 5.71512 5.76816 5.83001 5.95806 6.00225 6.13305 6.19263 6.22620 6.32403 6.36432 6.51602 6.67277 6.82496 6.89745 7.09622 7.58238 7.73086 7.93079 8.30625 9.42347 9.98459 10.32796 11.34931 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.002837 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.354059 B = 9867.077300 C =11306.249240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.105 4.105 4 H 0.071 0.929 5 C 0.119 3.881 6 N -0.591 5.591 7 C 0.569 3.431 8 O -0.530 6.530 9 C -0.140 4.140 10 C -0.032 4.032 11 C -0.095 4.095 12 C 0.251 3.749 13 N -0.323 5.323 14 N -0.005 5.005 15 N -0.103 5.103 16 N -0.305 5.305 17 C 0.169 3.831 18 C 0.096 3.904 19 C -0.153 4.153 20 C 0.184 3.816 21 H 0.050 0.950 22 N -0.719 5.719 23 C -0.243 4.243 24 H 0.070 0.930 25 C -0.010 4.010 26 N -0.931 5.931 27 Si 0.905 3.095 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.192 0.808 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.384 0.616 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.028 9.802 14.323 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.090 0.910 5 C -0.003 4.003 6 N -0.323 5.323 7 C 0.355 3.645 8 O -0.407 6.407 9 C -0.149 4.149 10 C -0.059 4.059 11 C -0.118 4.118 12 C -0.003 4.003 13 N -0.182 5.182 14 N 0.002 4.998 15 N -0.086 5.086 16 N -0.083 5.083 17 C 0.040 3.960 18 C -0.027 4.027 19 C -0.194 4.194 20 C 0.073 3.927 21 H 0.067 0.933 22 N -0.360 5.360 23 C -0.374 4.374 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.578 5.578 27 Si 0.736 3.264 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.185 0.815 39 H 0.192 0.808 40 H 0.209 0.791 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.218 0.782 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.686 11.262 13.890 18.764 hybrid contribution 0.845 -1.291 -0.416 1.598 sum -4.841 9.971 13.474 17.447 Atomic orbital electron populations 1.21850 0.96732 1.01173 1.01311 1.21452 0.94416 0.95487 1.03633 1.21800 0.97742 0.96447 0.96537 0.91030 1.21898 0.99632 0.80380 0.98390 1.48053 1.08784 1.06596 1.68848 1.17535 0.86381 0.82862 0.77745 1.90845 1.13116 1.85541 1.51191 1.19732 0.98138 0.94235 1.02807 1.21611 0.91872 0.98480 0.93889 1.20340 1.02434 0.87456 1.01532 1.23120 0.87194 0.95526 0.94493 1.75191 1.22229 0.99810 1.20996 1.77892 0.96546 1.22628 1.02709 1.82896 1.20703 0.81802 1.23245 1.48793 1.18449 1.08823 1.32238 1.21619 0.97920 0.79171 0.97329 1.22258 0.78993 1.01320 1.00114 1.22732 1.02538 0.99414 0.94740 1.20185 0.90675 0.90389 0.91467 0.93251 1.42395 1.16534 1.64354 1.12670 1.19142 0.91818 1.27758 0.98660 0.91253 1.24733 0.98128 1.01359 0.96407 1.69638 1.35370 1.48051 1.04759 0.86311 0.84083 0.79191 0.76816 1.21248 1.21730 1.21286 0.92939 0.93220 0.93091 0.92351 0.89680 0.88722 0.90943 0.81498 0.80769 0.79132 0.90220 0.90582 0.92091 0.90212 0.78151 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.67 37.16 0.36 -1.50 16 2 C -0.11 -1.58 5.31 -26.73 -0.14 -1.72 16 3 C -0.11 -1.46 1.93 -90.50 -0.17 -1.63 16 4 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 5 C 0.12 1.35 5.33 -3.71 -0.02 1.33 16 6 N -0.59 -6.14 2.97 -173.93 -0.52 -6.66 16 7 C 0.57 6.10 7.30 -12.40 -0.09 6.01 16 8 O -0.53 -7.30 16.32 5.30 0.09 -7.21 16 9 C -0.14 -1.17 5.04 -105.33 -0.53 -1.70 16 10 C -0.03 -0.19 7.39 -39.18 -0.29 -0.48 16 11 C -0.09 -0.60 10.09 -39.47 -0.40 -1.00 16 12 C 0.25 2.59 8.02 -156.28 -1.25 1.34 16 13 N -0.32 -4.12 12.26 31.10 0.38 -3.73 16 14 N 0.00 -0.06 13.35 60.35 0.81 0.74 16 15 N -0.10 -1.35 13.99 60.35 0.84 -0.51 16 16 N -0.30 -3.32 3.92 -12.06 -0.05 -3.37 16 17 C 0.17 1.53 10.78 -16.51 -0.18 1.36 16 18 C 0.10 0.89 4.92 -3.71 -0.02 0.87 16 19 C -0.15 -2.12 5.66 -26.61 -0.15 -2.27 16 20 C 0.18 2.97 2.19 -67.89 -0.15 2.82 16 21 H 0.05 0.82 8.08 -51.93 -0.42 0.40 16 22 N -0.72 -15.75 4.33 -53.39 -0.23 -15.99 16 23 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 24 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 26 N -0.93 -26.47 13.06 55.49 0.72 -25.74 16 27 Si 0.91 21.07 29.55 -169.99 -5.02 16.05 16 28 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.54 6.70 -51.93 -0.35 0.19 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.50 7.22 -51.93 -0.37 1.12 16 36 H 0.09 1.13 5.71 -51.92 -0.30 0.84 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.17 0.56 6.73 -52.49 -0.35 0.21 16 39 H 0.17 0.59 8.06 -52.49 -0.42 0.16 16 40 H 0.19 1.51 8.04 -52.49 -0.42 1.08 16 41 H 0.08 0.59 4.79 -51.93 -0.25 0.35 16 42 H 0.08 0.57 8.13 -51.93 -0.42 0.15 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.38 9.25 7.51 -40.82 -0.31 8.94 16 46 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -31.50 374.24 -6.74 -38.23 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.12 Total: 5.69 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -3.28 Total: -3.15 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 1.96 Total: -55.25 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.09 Total: -7.21 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.50 -6.74 -38.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037876524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.943 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds