Wall clock time and date at job start Wed Apr 1 2020 02:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47331 * 2 1 4 4 H 1.08997 * 109.52217 * 305.08371 * 3 2 1 5 5 C 1.53622 * 109.43064 * 65.28789 * 3 2 1 6 6 N 1.46929 * 108.54320 * 174.72664 * 5 3 2 7 7 C 1.34777 * 120.63130 * 126.36968 * 6 5 3 8 8 O 1.21569 * 120.00074 * 3.52454 * 7 6 5 9 9 C 1.47696 * 119.99833 * 183.52070 * 7 6 5 10 10 C 1.41592 * 120.03556 * 309.26789 * 9 7 6 11 11 C 1.35781 * 119.54861 * 179.97438 * 10 9 7 12 12 C 1.40855 * 119.39086 * 359.97438 * 11 10 9 13 13 N 1.32490 * 133.41446 * 179.97438 * 12 11 10 14 14 N 1.28537 * 110.23877 * 179.97438 * 13 12 11 15 15 N 1.28986 * 110.84509 * 359.97438 * 14 13 12 16 16 N 1.36917 * 119.93188 * 359.97438 * 12 11 10 17 17 C 1.35504 * 120.84995 * 0.02562 * 16 12 11 18 18 C 1.46925 * 118.73410 * 306.09664 * 6 5 3 19 19 C 1.53188 * 108.77745 * 53.86185 * 18 6 5 20 20 C 1.53035 * 109.31133 * 305.35991 * 19 18 6 21 21 H 1.09000 * 109.46221 * 181.38916 * 20 19 18 22 22 N 1.46499 * 109.46528 * 301.34751 * 20 19 18 23 23 C 1.36935 * 120.00026 * 275.00447 * 22 20 19 24 24 H 1.08003 * 120.00055 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00163 * 179.97438 * 23 22 20 26 26 N 1.31626 * 120.00128 * 179.97438 * 25 23 22 27 27 Si 1.86800 * 120.00092 * 359.97438 * 25 23 22 28 28 H 1.48504 * 109.46893 * 90.00311 * 27 25 23 29 29 H 1.48496 * 109.47635 * 210.00192 * 27 25 23 30 30 H 1.48497 * 109.46931 * 330.00722 * 27 25 23 31 31 H 1.09005 * 109.46483 * 299.99904 * 1 2 3 32 32 H 1.08997 * 109.46930 * 59.99784 * 1 2 3 33 33 H 1.08999 * 109.46966 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46696 * 239.99816 * 2 1 3 35 35 H 1.08997 * 109.46930 * 120.00216 * 2 1 3 36 36 H 1.09000 * 109.74284 * 54.98913 * 5 3 2 37 37 H 1.09003 * 109.66849 * 294.42077 * 5 3 2 38 38 H 1.08000 * 120.22400 * 359.97438 * 10 9 7 39 39 H 1.08007 * 120.30191 * 179.97438 * 11 10 9 40 40 H 1.07991 * 119.82537 * 179.97438 * 17 16 12 41 41 H 1.09008 * 109.58327 * 173.64898 * 18 6 5 42 42 H 1.09002 * 109.58476 * 293.92417 * 18 6 5 43 43 H 1.08994 * 109.49793 * 65.31384 * 19 18 6 44 44 H 1.09001 * 109.49517 * 185.41452 * 19 18 6 45 45 H 0.96999 * 120.00346 * 94.99568 * 22 20 19 46 46 H 0.96998 * 119.99923 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9827 -0.8407 5 6 1.6395 2.1262 1.3160 6 7 2.2452 3.4643 1.3507 7 6 1.4859 4.5564 1.5682 8 8 0.2990 4.4349 1.8016 9 6 2.0958 5.9008 1.5230 10 6 3.2663 6.1736 2.2716 11 6 3.8190 7.4128 2.2224 12 6 3.2177 8.4068 1.4258 13 7 3.5098 9.6751 1.1777 14 7 2.6479 10.1798 0.3688 15 7 1.7591 9.3046 0.0403 16 7 2.0867 8.1174 0.7104 17 6 1.5322 6.8819 0.7569 18 6 3.6953 3.5887 1.1498 19 6 4.0737 2.8881 -0.1589 20 6 3.5653 1.4450 -0.1258 21 1 3.8547 0.9368 -1.0456 22 7 4.1507 0.7474 1.0217 23 6 5.3880 0.1705 0.9139 24 1 5.9320 0.2295 -0.0172 25 6 5.9429 -0.4900 2.0014 26 7 7.1320 -1.0450 1.8976 27 14 5.0023 -0.5914 3.6121 28 1 4.1585 -1.8134 3.6165 29 1 5.9625 -0.6489 4.7434 30 1 4.1380 0.6074 3.7568 31 1 -0.3632 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 2.0009 1.5396 2.1606 37 1 0.5543 2.2149 1.3679 38 1 3.7163 5.4012 2.8776 39 1 4.7115 7.6344 2.7889 40 1 0.6398 6.6719 0.1863 41 1 3.9671 4.6427 1.0918 42 1 4.2210 3.1211 1.9824 43 1 3.6193 3.4147 -0.9981 44 1 5.1578 2.8893 -0.2720 45 1 3.6621 0.6942 1.8580 46 1 7.5199 -1.5062 2.6576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037876526.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:41 Heat of formation + Delta-G solvation = 135.161874 kcal Electronic energy + Delta-G solvation = -30796.332016 eV Core-core repulsion = 26724.836091 eV Total energy + Delta-G solvation = -4071.495924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.80153 -40.90535 -39.02730 -37.97314 -35.10431 -34.40012 -34.01424 -32.58171 -31.93277 -31.01963 -30.05647 -29.03245 -26.53662 -25.07169 -24.73152 -24.01865 -23.31309 -23.20485 -21.17390 -20.70846 -19.29941 -18.68679 -18.05504 -17.94554 -17.33962 -17.05797 -16.54105 -15.68956 -15.41165 -15.13855 -14.82922 -14.58091 -14.23739 -14.01098 -13.91019 -13.57190 -13.50611 -13.33128 -13.31275 -12.92317 -12.70700 -12.59105 -12.29231 -12.26107 -11.93206 -11.82464 -11.47367 -11.43425 -11.25914 -11.13137 -11.00817 -10.63968 -10.56574 -10.51937 -10.35582 -10.11798 -9.99670 -9.68818 -9.14181 -9.07828 -8.69706 -7.43004 -5.90766 -3.27454 -0.24026 -0.00748 1.16865 1.61923 2.22225 2.55864 2.79464 3.20429 3.21843 3.25782 3.33941 3.59766 3.90443 3.96446 4.35090 4.43948 4.44819 4.76752 4.84528 4.90200 4.99196 5.08921 5.11598 5.16731 5.17639 5.25719 5.38019 5.41319 5.42830 5.46507 5.48500 5.58498 5.66657 5.79125 5.80896 5.86707 6.00022 6.07431 6.16811 6.22832 6.29525 6.36334 6.49360 6.59687 6.67145 7.14905 7.75795 7.84441 7.95402 8.27810 9.05199 9.77437 9.96339 11.27383 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013235 B = 0.003345 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.139189 B = 8368.146171 C = 9496.899434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.107 4.107 4 H 0.074 0.926 5 C 0.117 3.883 6 N -0.588 5.588 7 C 0.567 3.433 8 O -0.531 6.531 9 C -0.134 4.134 10 C -0.033 4.033 11 C -0.092 4.092 12 C 0.251 3.749 13 N -0.323 5.323 14 N -0.005 5.005 15 N -0.106 5.106 16 N -0.303 5.303 17 C 0.162 3.838 18 C 0.101 3.899 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.063 0.937 22 N -0.743 5.743 23 C -0.244 4.244 24 H 0.091 0.909 25 C 0.009 3.991 26 N -0.931 5.931 27 Si 0.879 3.121 28 H -0.284 1.284 29 H -0.291 1.291 30 H -0.279 1.279 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.094 0.906 38 H 0.168 0.832 39 H 0.176 0.824 40 H 0.190 0.810 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.053 0.947 44 H 0.083 0.917 45 H 0.360 0.640 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.526 11.347 -1.228 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.127 4.127 4 H 0.092 0.908 5 C -0.005 4.005 6 N -0.319 5.319 7 C 0.353 3.647 8 O -0.409 6.409 9 C -0.143 4.143 10 C -0.059 4.059 11 C -0.115 4.115 12 C -0.003 4.003 13 N -0.182 5.182 14 N 0.001 4.999 15 N -0.089 5.089 16 N -0.082 5.082 17 C 0.033 3.967 18 C -0.021 4.021 19 C -0.191 4.191 20 C 0.074 3.926 21 H 0.081 0.919 22 N -0.387 5.387 23 C -0.374 4.374 24 H 0.109 0.891 25 C -0.188 4.188 26 N -0.578 5.578 27 Si 0.709 3.291 28 H -0.210 1.210 29 H -0.217 1.217 30 H -0.206 1.206 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.185 0.815 39 H 0.193 0.807 40 H 0.207 0.793 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.101 0.899 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.128 12.687 -1.898 16.982 hybrid contribution -0.426 -1.028 1.514 1.879 sum -11.554 11.659 -0.385 16.419 Atomic orbital electron populations 1.21869 0.96521 1.01363 1.01476 1.21435 0.94550 0.95464 1.03499 1.21903 0.97536 0.96410 0.96830 0.90768 1.21923 0.99260 0.80772 0.98545 1.48089 1.09079 1.06330 1.68437 1.17555 0.86025 0.83036 0.78125 1.90843 1.14821 1.86138 1.49066 1.19729 0.98068 0.95382 1.01104 1.21592 0.91957 0.96962 0.95371 1.20360 1.02364 0.89402 0.99366 1.23103 0.87570 0.94387 0.95267 1.75199 1.22028 1.04120 1.16843 1.77886 0.96835 1.20763 1.04371 1.82873 1.21000 0.85689 1.19356 1.48770 1.19105 1.10733 1.29570 1.21507 0.98178 0.79255 0.97807 1.22124 0.78521 1.00663 1.00792 1.22516 1.02668 0.98850 0.95064 1.20197 0.89308 0.90614 0.92493 0.91922 1.42836 1.19858 1.65794 1.10203 1.19034 0.92149 1.27004 0.99236 0.89139 1.24650 0.96427 1.00140 0.97534 1.69688 1.16267 1.40891 1.30946 0.86677 0.79383 0.77805 0.85232 1.21013 1.21724 1.20571 0.92842 0.93065 0.92925 0.91326 0.91057 0.90891 0.88825 0.81460 0.80690 0.79346 0.90532 0.89314 0.92817 0.89855 0.80620 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.68 37.16 0.36 -1.30 16 2 C -0.11 -1.42 5.19 -26.73 -0.14 -1.56 16 3 C -0.11 -1.35 2.15 -90.28 -0.19 -1.55 16 4 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 5 C 0.12 1.48 5.04 -3.49 -0.02 1.47 16 6 N -0.59 -6.90 2.97 -173.67 -0.52 -7.42 16 7 C 0.57 6.52 7.22 -12.40 -0.09 6.43 16 8 O -0.53 -7.62 16.46 5.30 0.09 -7.54 16 9 C -0.13 -1.22 4.95 -105.33 -0.52 -1.74 16 10 C -0.03 -0.24 7.37 -39.18 -0.29 -0.53 16 11 C -0.09 -0.68 10.09 -39.47 -0.40 -1.08 16 12 C 0.25 2.72 8.02 -156.28 -1.25 1.46 16 13 N -0.32 -4.22 12.26 31.10 0.38 -3.84 16 14 N -0.01 -0.08 13.35 60.35 0.81 0.73 16 15 N -0.11 -1.38 13.99 60.35 0.84 -0.54 16 16 N -0.30 -3.36 3.92 -12.06 -0.05 -3.40 16 17 C 0.16 1.48 10.87 -16.51 -0.18 1.31 16 18 C 0.10 1.15 5.12 -3.71 -0.02 1.14 16 19 C -0.15 -1.96 5.78 -26.62 -0.15 -2.11 16 20 C 0.18 2.79 2.53 -67.89 -0.17 2.62 16 21 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 22 N -0.74 -14.25 3.53 -53.39 -0.19 -14.44 16 23 C -0.24 -5.95 10.41 -15.06 -0.16 -6.11 16 24 H 0.09 2.41 8.06 -52.48 -0.42 1.99 16 25 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 26 N -0.93 -27.02 13.97 55.49 0.78 -26.24 16 27 Si 0.88 19.93 27.73 -169.99 -4.71 15.22 16 28 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H -0.28 -5.78 6.52 56.52 0.37 -5.41 16 31 H 0.05 0.56 6.70 -51.93 -0.35 0.21 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 1.05 7.70 -51.93 -0.40 0.65 16 36 H 0.07 1.02 6.64 -51.93 -0.34 0.68 16 37 H 0.09 1.18 5.75 -51.93 -0.30 0.88 16 38 H 0.17 0.95 7.11 -52.49 -0.37 0.58 16 39 H 0.18 0.82 8.06 -52.48 -0.42 0.39 16 40 H 0.19 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.08 0.68 4.55 -51.92 -0.24 0.45 16 42 H 0.09 1.18 7.75 -51.93 -0.40 0.78 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.36 6.90 3.80 -40.82 -0.15 6.75 16 46 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 368.23 15.07 5.55 5.55 Total: -1.00 -31.03 368.23 -6.29 -37.32 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.95 Total: 6.01 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -3.32 Total: -1.42 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 2.06 Total: -55.15 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.09 Total: -7.54 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.71 Total: 15.22 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.03 -6.29 -37.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037876526.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.479 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds