Wall clock time and date at job start Wed Apr 1 2020 02:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47068 * 2 1 4 4 H 1.08993 * 109.50292 * 54.92574 * 3 2 1 5 5 C 1.53192 * 109.51774 * 294.84629 * 3 2 1 6 6 N 1.46932 * 108.77355 * 185.40068 * 5 3 2 7 7 C 1.34775 * 120.62949 * 233.59125 * 6 5 3 8 8 O 1.21574 * 120.00177 * 356.17161 * 7 6 5 9 9 C 1.47697 * 120.00302 * 176.17484 * 7 6 5 10 10 C 1.41593 * 120.02863 * 50.75934 * 9 7 6 11 11 C 1.35784 * 119.54827 * 179.73768 * 10 9 7 12 12 C 1.40862 * 119.38949 * 0.51801 * 11 10 9 13 13 N 1.32481 * 133.41808 * 179.75187 * 12 11 10 14 14 N 1.28540 * 110.24278 * 180.02562 * 13 12 11 15 15 N 1.28986 * 110.84245 * 0.02562 * 14 13 12 16 16 N 1.36934 * 119.92733 * 359.75507 * 12 11 10 17 17 C 1.35489 * 120.84804 * 359.97438 * 16 12 11 18 18 C 1.46917 * 118.73961 * 53.60834 * 6 5 3 19 19 C 1.53162 * 108.77198 * 306.39185 * 18 6 5 20 20 C 1.53035 * 109.49629 * 174.99812 * 3 2 1 21 21 H 1.09003 * 109.46290 * 301.35061 * 20 3 2 22 22 N 1.46503 * 109.46530 * 61.32410 * 20 3 2 23 23 C 1.36935 * 120.00329 * 205.02887 * 22 20 3 24 24 H 1.08001 * 119.99717 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99991 * 179.97438 * 23 22 20 26 26 N 1.31620 * 120.00039 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99914 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46778 * 0.02562 * 27 25 23 29 29 H 1.48496 * 109.46922 * 240.00217 * 27 25 23 30 30 H 1.48503 * 109.46767 * 120.00121 * 27 25 23 31 31 H 1.09000 * 109.46879 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47502 * 300.00657 * 1 2 3 33 33 H 1.08998 * 109.46416 * 60.00823 * 1 2 3 34 34 H 1.08993 * 109.47502 * 239.99343 * 2 1 3 35 35 H 1.09005 * 109.46783 * 119.99084 * 2 1 3 36 36 H 1.08996 * 109.59137 * 305.18684 * 5 3 2 37 37 H 1.09006 * 109.58670 * 65.61589 * 5 3 2 38 38 H 1.08001 * 120.22569 * 359.97438 * 10 9 7 39 39 H 1.08000 * 120.30923 * 180.27268 * 11 10 9 40 40 H 1.08003 * 119.82560 * 180.02562 * 17 16 12 41 41 H 1.09003 * 109.58513 * 66.18402 * 18 6 5 42 42 H 1.09001 * 109.59045 * 186.46642 * 18 6 5 43 43 H 1.09004 * 109.50052 * 294.68523 * 19 18 6 44 44 H 1.08997 * 109.48360 * 174.58808 * 19 18 6 45 45 H 0.97000 * 119.99401 * 25.02418 * 22 20 3 46 46 H 0.96998 * 119.99889 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9824 0.8408 5 6 1.6386 2.1273 -1.3102 6 7 2.2452 3.4650 -1.3498 7 6 1.4858 4.5571 -1.5668 8 8 0.2991 4.4356 -1.8011 9 6 2.0953 5.9016 -1.5199 10 6 3.2658 6.1755 -2.2680 11 6 3.8150 7.4165 -2.2220 12 6 3.2158 8.4082 -1.4210 13 7 3.5081 9.6759 -1.1707 14 7 2.6486 10.1783 -0.3577 15 7 1.7613 9.3019 -0.0285 16 7 2.0873 8.1164 -0.7025 17 6 1.5334 6.8808 -0.7502 18 6 3.6952 3.5894 -1.1488 19 6 4.0734 2.8883 0.1594 20 6 3.5652 1.4450 0.1258 21 1 3.8546 0.9367 1.0455 22 7 4.1509 0.7481 -1.0221 23 6 5.3885 0.1719 -0.9147 24 1 5.9330 0.2316 0.0161 25 6 5.9431 -0.4889 -2.0022 26 7 5.2797 -0.5612 -3.1367 27 14 7.6317 -1.2743 -1.8559 28 1 8.1635 -1.0532 -0.4872 29 1 8.5500 -0.6620 -2.8493 30 1 7.5233 -2.7326 -2.1149 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8898 33 1 -0.3632 0.5137 -0.8901 34 1 1.8934 -0.5139 -0.8898 35 1 1.8933 -0.5137 0.8901 36 1 1.9966 1.5387 -2.1549 37 1 0.5533 2.2166 -1.3583 38 1 3.7167 5.4036 -2.8742 39 1 4.7052 7.6400 -2.7912 40 1 0.6429 6.6688 -0.1771 41 1 4.2210 3.1200 -1.9803 42 1 3.9673 4.6434 -1.0928 43 1 3.6188 3.4145 0.9988 44 1 5.1575 2.8897 0.2724 45 1 3.6619 0.6948 -1.8581 46 1 4.4030 -0.1531 -3.2127 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037876527.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:44 Heat of formation + Delta-G solvation = 131.325121 kcal Electronic energy + Delta-G solvation = -30732.583533 eV Core-core repulsion = 26660.921234 eV Total energy + Delta-G solvation = -4071.662298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.78154 -40.86293 -38.99251 -37.92877 -35.07936 -34.40085 -34.11586 -32.55923 -31.98398 -30.99579 -29.59888 -28.61063 -26.40151 -25.01830 -24.60146 -23.94453 -23.56896 -23.19931 -21.22605 -20.66555 -19.30353 -18.77420 -17.95750 -17.49703 -17.35110 -17.07873 -16.50669 -15.63497 -15.33618 -15.30035 -14.93688 -14.52561 -14.12188 -13.94761 -13.81795 -13.54755 -13.47753 -13.40650 -13.27582 -12.90487 -12.87956 -12.51452 -12.25611 -12.15502 -11.87878 -11.76158 -11.44745 -11.36574 -11.16337 -10.84371 -10.72508 -10.58394 -10.51007 -10.36311 -10.17141 -10.05885 -10.05714 -9.29074 -9.11325 -9.04643 -8.63729 -7.18219 -6.22467 -3.24309 -0.21727 0.01517 1.18919 1.64050 2.25704 2.59273 2.83418 3.23943 3.43885 3.48702 3.58097 3.62218 3.93196 4.00017 4.37179 4.47811 4.54864 4.81459 4.86890 4.98344 5.05110 5.11385 5.17503 5.20754 5.24050 5.28754 5.44951 5.48937 5.50095 5.51102 5.53687 5.65654 5.74058 5.81810 5.85951 5.91435 6.05599 6.11032 6.20365 6.27860 6.33869 6.41860 6.51871 6.66025 6.71841 7.20488 7.69661 7.80635 7.97033 8.61990 9.06954 9.93410 10.08029 11.24957 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012428 B = 0.003220 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.523743 B = 8693.649761 C =10207.438233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.105 4.105 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.586 5.586 7 C 0.567 3.433 8 O -0.531 6.531 9 C -0.133 4.133 10 C -0.032 4.032 11 C -0.093 4.093 12 C 0.251 3.749 13 N -0.323 5.323 14 N -0.006 5.006 15 N -0.107 5.107 16 N -0.303 5.303 17 C 0.161 3.839 18 C 0.103 3.897 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.054 0.946 22 N -0.729 5.729 23 C -0.331 4.331 24 H 0.065 0.935 25 C -0.041 4.041 26 N -0.942 5.942 27 Si 1.081 2.919 28 H -0.295 1.295 29 H -0.293 1.293 30 H -0.294 1.294 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.169 0.831 39 H 0.176 0.824 40 H 0.189 0.811 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.366 0.634 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 10.214 4.126 12.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.125 4.125 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.317 5.317 7 C 0.352 3.648 8 O -0.409 6.409 9 C -0.142 4.142 10 C -0.058 4.058 11 C -0.116 4.116 12 C -0.003 4.003 13 N -0.182 5.182 14 N 0.001 4.999 15 N -0.090 5.090 16 N -0.082 5.082 17 C 0.031 3.969 18 C -0.018 4.018 19 C -0.191 4.191 20 C 0.073 3.927 21 H 0.072 0.928 22 N -0.373 5.373 23 C -0.462 4.462 24 H 0.083 0.917 25 C -0.239 4.239 26 N -0.588 5.588 27 Si 0.913 3.087 28 H -0.222 1.222 29 H -0.221 1.221 30 H -0.221 1.221 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.186 0.814 39 H 0.193 0.807 40 H 0.206 0.794 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.201 0.799 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.793 10.773 4.107 12.903 hybrid contribution -1.178 -0.001 0.397 1.243 sum -6.971 10.773 4.504 13.599 Atomic orbital electron populations 1.21862 0.96567 1.01314 1.01412 1.21407 0.94461 0.95442 1.03403 1.21797 0.97552 0.96368 0.96822 0.91235 1.21807 0.99067 0.80717 0.98639 1.48066 1.08974 1.06359 1.68312 1.17554 0.86035 0.83029 0.78216 1.90844 1.14837 1.86132 1.49094 1.19747 0.98014 0.95434 1.00973 1.21608 0.91926 0.96935 0.95314 1.20361 1.02435 0.89406 0.99365 1.23106 0.87619 0.94360 0.95243 1.75191 1.22087 1.04198 1.16770 1.77883 0.96885 1.20730 1.04390 1.82868 1.21045 0.85767 1.19301 1.48764 1.19216 1.10753 1.29423 1.21502 0.98208 0.79278 0.97881 1.22077 0.78635 1.00398 1.00732 1.22526 1.02261 0.99231 0.95104 1.20157 0.89408 0.90506 0.92596 0.92811 1.42482 1.19492 1.65212 1.10134 1.20064 0.94585 1.31792 0.99732 0.91719 1.25680 1.05535 0.99983 0.92708 1.70857 1.14431 1.47591 1.25886 0.83194 0.74722 0.76354 0.74464 1.22167 1.22059 1.22085 0.92962 0.93223 0.92763 0.90793 0.91773 0.90567 0.89012 0.81407 0.80703 0.79370 0.89185 0.90727 0.93131 0.90345 0.79902 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.68 37.16 0.36 -1.44 16 2 C -0.11 -1.51 5.19 -26.73 -0.14 -1.65 16 3 C -0.11 -1.44 2.13 -90.50 -0.19 -1.64 16 4 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 5 C 0.12 1.62 5.02 -3.71 -0.02 1.60 16 6 N -0.59 -7.30 2.97 -173.95 -0.52 -7.82 16 7 C 0.57 6.91 7.22 -12.40 -0.09 6.82 16 8 O -0.53 -8.01 16.46 5.30 0.09 -7.92 16 9 C -0.13 -1.28 4.96 -105.33 -0.52 -1.81 16 10 C -0.03 -0.25 7.37 -39.18 -0.29 -0.54 16 11 C -0.09 -0.73 10.09 -39.47 -0.40 -1.12 16 12 C 0.25 2.81 8.02 -156.27 -1.25 1.55 16 13 N -0.32 -4.32 12.26 31.10 0.38 -3.94 16 14 N -0.01 -0.08 13.35 60.35 0.81 0.72 16 15 N -0.11 -1.42 13.99 60.35 0.84 -0.58 16 16 N -0.30 -3.47 3.92 -12.06 -0.05 -3.52 16 17 C 0.16 1.55 10.87 -16.52 -0.18 1.37 16 18 C 0.10 1.27 5.13 -3.73 -0.02 1.25 16 19 C -0.15 -2.09 5.78 -26.62 -0.15 -2.24 16 20 C 0.18 2.98 2.53 -67.89 -0.17 2.81 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.73 -14.89 3.72 -53.38 -0.20 -15.09 16 23 C -0.33 -8.05 9.93 -15.06 -0.15 -8.20 16 24 H 0.06 1.59 7.83 -52.49 -0.41 1.18 16 25 C -0.04 -1.07 5.50 -17.43 -0.10 -1.17 16 26 N -0.94 -26.37 13.70 55.49 0.76 -25.61 16 27 Si 1.08 23.97 29.92 -169.99 -5.09 18.88 16 28 H -0.30 -6.18 7.11 56.52 0.40 -5.77 16 29 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 30 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.62 6.70 -51.93 -0.35 0.28 16 34 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.08 1.16 6.64 -51.93 -0.34 0.81 16 37 H 0.09 1.25 5.75 -51.93 -0.30 0.95 16 38 H 0.17 1.08 7.10 -52.49 -0.37 0.70 16 39 H 0.18 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.19 1.51 8.06 -52.48 -0.42 1.09 16 41 H 0.09 1.31 7.74 -51.93 -0.40 0.91 16 42 H 0.07 0.72 4.54 -51.93 -0.24 0.49 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.37 7.80 4.78 -40.82 -0.19 7.61 16 46 H 0.25 6.93 6.77 -40.82 -0.28 6.66 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -30.53 369.61 -6.59 -37.13 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -5.88 Total: 6.57 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -3.31 Total: -4.39 kcal Atomic # 7 Polarization: -57.86 SS G_CDS: 2.03 Total: -55.83 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.09 Total: 18.88 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.53 -6.59 -37.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037876527.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.453 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds