Wall clock time and date at job start Wed Apr 1 2020 02:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46882 * 2 1 4 4 H 1.08998 * 109.49981 * 304.93973 * 3 2 1 5 5 C 1.53187 * 109.49468 * 65.00559 * 3 2 1 6 6 N 1.46928 * 108.77488 * 174.58497 * 5 3 2 7 7 C 1.34777 * 120.62956 * 126.36868 * 6 5 3 8 8 O 1.21544 * 120.00155 * 3.91046 * 7 6 5 9 9 C 1.47878 * 119.99658 * 183.91420 * 7 6 5 10 10 C 1.39449 * 121.11767 * 307.39628 * 9 7 6 11 11 C 1.38611 * 119.37683 * 179.70199 * 10 9 7 12 12 N 1.31581 * 121.63797 * 0.30206 * 11 10 9 13 13 C 1.32210 * 121.86694 * 359.97438 * 12 11 10 14 14 N 1.37212 * 134.67676 * 179.97438 * 13 12 11 15 15 H 0.96997 * 125.87239 * 359.97438 * 14 13 12 16 16 N 1.28783 * 108.26041 * 180.02562 * 14 13 12 17 17 N 1.28692 * 111.75972 * 359.97438 * 16 14 13 18 18 C 1.34388 * 109.15238 * 359.97438 * 17 16 14 19 19 C 1.46925 * 118.73867 * 306.63929 * 6 5 3 20 20 C 1.52765 * 109.00428 * 53.30905 * 19 6 5 21 21 C 1.53035 * 109.49515 * 184.83940 * 3 2 1 22 22 H 1.09000 * 109.46279 * 298.70664 * 21 3 2 23 23 N 1.46504 * 109.46197 * 58.66576 * 21 3 2 24 24 C 1.36927 * 120.00417 * 204.99707 * 23 21 3 25 25 H 1.08006 * 119.99836 * 359.97438 * 24 23 21 26 26 C 1.38811 * 120.00423 * 180.02562 * 24 23 21 27 27 N 1.31614 * 120.00177 * 180.02562 * 26 24 23 28 28 Si 1.86806 * 119.99741 * 359.97438 * 26 24 23 29 29 H 1.48495 * 109.47005 * 90.00186 * 28 26 24 30 30 H 1.48497 * 109.46938 * 210.00206 * 28 26 24 31 31 H 1.48499 * 109.46775 * 330.00115 * 28 26 24 32 32 H 1.08997 * 109.47709 * 59.99513 * 1 2 3 33 33 H 1.09009 * 109.47019 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46707 * 299.99134 * 1 2 3 35 35 H 1.09009 * 109.46915 * 240.00499 * 2 1 3 36 36 H 1.08997 * 109.47709 * 120.00487 * 2 1 3 37 37 H 1.09002 * 109.59361 * 54.79453 * 5 3 2 38 38 H 1.09001 * 109.70251 * 294.44164 * 5 3 2 39 39 H 1.08004 * 120.30825 * 359.97438 * 10 9 7 40 40 H 1.08002 * 119.18057 * 180.28038 * 11 10 9 41 41 H 1.09000 * 109.58406 * 173.14045 * 19 6 5 42 42 H 1.09000 * 109.58907 * 293.56993 * 19 6 5 43 43 H 1.08999 * 109.56444 * 185.55116 * 20 19 6 44 44 H 1.09001 * 109.35871 * 65.50152 * 20 19 6 45 45 H 0.97000 * 119.99447 * 24.99984 * 23 21 3 46 46 H 0.97006 * 120.00113 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9817 -0.8423 5 6 1.6351 2.1279 1.3088 6 7 2.2415 3.4656 1.3494 7 6 1.4814 4.5579 1.5631 8 8 0.2945 4.4365 1.7950 9 6 2.0916 5.9041 1.5152 10 6 3.2205 6.2110 2.2741 11 6 3.7666 7.4827 2.1970 12 7 3.2427 8.4133 1.4283 13 6 2.1701 8.1861 0.6894 14 7 1.4219 8.9373 -0.1815 15 1 1.5846 9.8639 -0.4177 16 7 0.4657 8.2009 -0.6308 17 7 0.5053 7.0134 -0.1363 18 6 1.5497 6.9205 0.7042 19 6 3.6913 3.5904 1.1467 20 6 4.0740 2.8880 -0.1548 21 6 3.5654 1.4450 -0.1217 22 1 3.9988 0.9268 0.7337 23 7 3.9577 0.7609 -1.3564 24 6 5.1960 0.1851 -1.4565 25 1 5.8838 0.2357 -0.6252 26 6 5.5679 -0.4626 -2.6265 27 7 6.7580 -1.0164 -2.7225 28 14 4.3786 -0.5494 -4.0644 29 1 4.5808 0.6285 -4.9458 30 1 4.6254 -1.7936 -4.8365 31 1 2.9841 -0.5521 -3.5539 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0278 -0.0005 34 1 -0.3633 0.5137 0.8901 35 1 1.8933 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8899 37 1 1.9907 1.5396 2.1547 38 1 0.5497 2.2171 1.3565 39 1 3.6678 5.4635 2.9126 40 1 4.6436 7.7156 2.7826 41 1 3.9622 4.6444 1.0848 42 1 4.2182 3.1238 1.9791 43 1 5.1584 2.8892 -0.2650 44 1 3.6218 3.4140 -0.9956 45 1 3.3401 0.7159 -2.1030 46 1 7.0177 -1.4694 -3.5400 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037891940.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:17 Heat of formation + Delta-G solvation = 112.307295 kcal Electronic energy + Delta-G solvation = -30668.548461 eV Core-core repulsion = 26596.061488 eV Total energy + Delta-G solvation = -4072.486973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.77463 -40.62644 -39.18983 -37.93597 -35.05248 -34.56081 -33.92100 -32.36183 -31.81840 -31.22790 -29.99312 -28.97439 -26.37404 -24.96107 -24.39136 -23.99002 -23.31103 -22.43527 -20.92465 -20.68318 -19.76560 -19.15130 -18.36587 -17.74482 -17.42912 -16.97659 -16.28806 -15.93704 -15.50403 -15.02438 -14.88667 -14.36149 -14.13556 -13.84614 -13.63423 -13.59178 -13.40488 -13.30119 -12.85639 -12.73537 -12.67180 -12.43387 -12.14694 -12.06094 -11.91043 -11.80320 -11.44555 -11.07286 -11.05518 -10.83779 -10.54916 -10.41409 -10.35018 -10.23792 -9.83078 -9.80038 -9.62379 -9.59998 -9.41300 -8.95965 -8.66622 -7.31506 -5.81866 -3.17311 -0.24492 0.47450 1.75011 1.84714 2.40709 2.73656 3.13844 3.34523 3.35057 3.38423 3.43437 3.82294 3.95038 4.10611 4.38137 4.55275 4.70880 4.82701 4.94560 4.99560 5.06313 5.10819 5.17113 5.29735 5.34383 5.42068 5.48752 5.55009 5.56208 5.74149 5.76337 5.86730 5.96827 6.00105 6.04862 6.20024 6.20790 6.22230 6.31360 6.38925 6.50522 6.67276 6.75152 6.89639 7.07274 7.24560 7.77583 7.93326 7.94256 8.37280 9.15477 9.88507 10.08293 11.36320 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012477 B = 0.003230 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.646632 B = 8666.722440 C = 9269.349815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.110 4.110 4 H 0.070 0.930 5 C 0.121 3.879 6 N -0.595 5.595 7 C 0.559 3.441 8 O -0.517 6.517 9 C 0.005 3.995 10 C -0.146 4.146 11 C 0.166 3.834 12 N -0.463 5.463 13 C 0.219 3.781 14 N -0.405 5.405 15 H 0.458 0.542 16 N 0.006 4.994 17 N -0.220 5.220 18 C -0.004 4.004 19 C 0.096 3.904 20 C -0.153 4.153 21 C 0.189 3.811 22 H 0.058 0.942 23 N -0.745 5.745 24 C -0.243 4.243 25 H 0.091 0.909 26 C 0.007 3.993 27 N -0.933 5.933 28 Si 0.880 3.120 29 H -0.285 1.285 30 H -0.291 1.291 31 H -0.276 1.276 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.163 0.837 40 H 0.184 0.816 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.361 0.639 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.462 17.540 12.046 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.130 4.130 4 H 0.089 0.911 5 C -0.001 4.001 6 N -0.327 5.327 7 C 0.345 3.655 8 O -0.392 6.392 9 C -0.011 4.011 10 C -0.169 4.169 11 C -0.007 4.007 12 N -0.176 5.176 13 C -0.025 4.025 14 N -0.136 5.136 15 H 0.306 0.694 16 N 0.023 4.977 17 N -0.097 5.097 18 C -0.133 4.133 19 C -0.027 4.027 20 C -0.194 4.194 21 C 0.079 3.921 22 H 0.076 0.924 23 N -0.386 5.386 24 C -0.373 4.373 25 H 0.108 0.892 26 C -0.189 4.189 27 N -0.581 5.581 28 Si 0.711 3.289 29 H -0.212 1.212 30 H -0.218 1.218 31 H -0.202 1.202 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.181 0.819 40 H 0.201 0.799 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.194 0.806 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.812 18.062 11.185 23.000 hybrid contribution 0.072 -0.090 -0.795 0.803 sum -8.739 17.972 10.390 22.524 Atomic orbital electron populations 1.21861 0.96568 1.01222 1.01534 1.21461 0.94603 0.95499 1.03496 1.21849 0.97668 0.96432 0.97041 0.91143 1.21809 0.99659 0.80674 0.97925 1.48087 1.08708 1.06430 1.69459 1.17884 0.86222 0.83368 0.78005 1.90828 1.14521 1.85910 1.47983 1.19544 0.93919 0.93438 0.94246 1.22440 0.94780 0.99408 1.00306 1.22863 0.97728 0.87282 0.92786 1.66324 1.08531 1.36094 1.06699 1.19832 0.95363 0.89989 0.97282 1.44688 1.20836 1.15250 1.32791 0.69351 1.78228 1.06166 0.98030 1.15300 1.75477 1.16590 1.08517 1.09092 1.20084 0.96958 0.94593 1.01654 1.22093 0.79088 1.01735 0.99778 1.22588 1.02760 0.98873 0.95203 1.20156 0.90616 0.90534 0.90778 0.92355 1.42775 1.16530 1.66213 1.13119 1.19036 0.90393 1.27396 1.00447 0.89162 1.24640 0.96369 1.00206 0.97655 1.69691 1.19255 1.41501 1.27616 0.86619 0.81207 0.77342 0.83760 1.21208 1.21759 1.20214 0.93030 0.93011 0.92885 0.90381 0.91856 0.90900 0.88796 0.81905 0.79867 0.90099 0.90480 0.89821 0.92366 0.80579 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 37.16 0.36 -1.62 16 2 C -0.11 -1.66 5.31 -26.73 -0.14 -1.80 16 3 C -0.11 -1.65 1.93 -90.50 -0.17 -1.82 16 4 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 5 C 0.12 1.60 5.31 -3.71 -0.02 1.58 16 6 N -0.59 -7.63 2.98 -174.13 -0.52 -8.15 16 7 C 0.56 7.96 7.28 -12.31 -0.09 7.87 16 8 O -0.52 -9.09 16.51 5.33 0.09 -9.00 16 9 C 0.01 0.06 4.96 -104.51 -0.52 -0.46 16 10 C -0.15 -1.12 7.52 -38.99 -0.29 -1.41 16 11 C 0.17 1.10 11.14 -17.52 -0.20 0.90 16 12 N -0.46 -4.28 10.35 -12.38 -0.13 -4.41 16 13 C 0.22 2.40 8.56 -156.20 -1.34 1.06 16 14 N -0.41 -3.73 7.06 31.11 0.22 -3.51 16 15 H 0.46 2.22 8.96 -190.25 -1.71 0.52 16 16 N 0.01 0.07 13.29 60.35 0.80 0.87 16 17 N -0.22 -3.33 12.42 32.23 0.40 -2.93 16 18 C 0.00 -0.06 7.14 -84.72 -0.61 -0.66 16 19 C 0.10 1.08 5.50 -3.93 -0.02 1.06 16 20 C -0.15 -2.33 5.64 -26.83 -0.15 -2.48 16 21 C 0.19 3.25 2.19 -67.89 -0.15 3.10 16 22 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 23 N -0.74 -16.32 4.14 -53.39 -0.22 -16.54 16 24 C -0.24 -6.41 10.41 -15.06 -0.16 -6.57 16 25 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 26 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 27 N -0.93 -28.40 13.97 55.49 0.78 -27.62 16 28 Si 0.88 21.66 27.74 -169.99 -4.71 16.94 16 29 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 30 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 31 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 35 H 0.08 1.36 7.22 -51.92 -0.37 0.99 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.31 5.75 -51.93 -0.30 1.01 16 39 H 0.16 0.78 7.32 -52.48 -0.38 0.39 16 40 H 0.18 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.08 0.77 4.68 -51.93 -0.24 0.52 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.36 8.06 5.37 -40.82 -0.22 7.84 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -35.45 370.89 -8.69 -44.14 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.39 Total: 5.78 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -3.59 Total: -1.16 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: 1.33 Total: -62.29 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.94 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.45 -8.69 -44.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037891940.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.443 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds