Wall clock time and date at job start Wed Apr 1 2020 02:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 H 1.08995 * 109.52613 * 54.91513 * 3 2 1 5 5 C 1.52767 * 109.56087 * 294.96399 * 3 2 1 6 6 N 1.46935 * 109.00533 * 185.55415 * 5 3 2 7 7 C 1.34776 * 120.62492 * 233.58662 * 6 5 3 8 8 O 1.21544 * 119.99272 * 183.63114 * 7 6 5 9 9 C 1.47873 * 120.00359 * 3.62835 * 7 6 5 10 10 C 1.39450 * 121.11273 * 307.40780 * 9 7 6 11 11 C 1.38617 * 119.37487 * 180.02562 * 10 9 7 12 12 N 1.31589 * 121.63255 * 0.03030 * 11 10 9 13 13 C 1.32206 * 121.86781 * 359.94982 * 12 11 10 14 14 N 1.37217 * 134.67067 * 180.02562 * 13 12 11 15 15 H 0.96997 * 125.86663 * 0.02562 * 14 13 12 16 16 N 1.28782 * 108.25957 * 180.02562 * 14 13 12 17 17 N 1.28694 * 111.75780 * 0.02562 * 16 14 13 18 18 C 1.34395 * 109.15092 * 0.02562 * 17 16 14 19 19 C 1.46917 * 118.73854 * 53.30907 * 6 5 3 20 20 C 1.53199 * 108.77735 * 306.64407 * 19 6 5 21 21 C 1.53035 * 109.31228 * 54.63646 * 20 19 6 22 22 H 1.08994 * 109.45889 * 178.61700 * 21 20 19 23 23 N 1.46498 * 109.46243 * 58.63967 * 21 20 19 24 24 C 1.36944 * 119.99649 * 85.00110 * 23 21 20 25 25 H 1.07995 * 119.99957 * 0.02562 * 24 23 21 26 26 C 1.38812 * 119.99845 * 180.02562 * 24 23 21 27 27 N 1.31621 * 119.99733 * 359.97438 * 26 24 23 28 28 Si 1.86794 * 120.00003 * 180.02562 * 26 24 23 29 29 H 1.48504 * 109.47071 * 359.97438 * 28 26 24 30 30 H 1.48501 * 109.47238 * 119.99476 * 28 26 24 31 31 H 1.48496 * 109.47262 * 239.99691 * 28 26 24 32 32 H 1.08997 * 109.47630 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47377 * 300.00441 * 1 2 3 34 34 H 1.08994 * 109.47100 * 60.00036 * 1 2 3 35 35 H 1.08998 * 109.46866 * 239.99519 * 2 1 3 36 36 H 1.09002 * 109.46919 * 119.99654 * 2 1 3 37 37 H 1.09001 * 109.50850 * 65.67469 * 5 3 2 38 38 H 1.08994 * 109.43004 * 305.38950 * 5 3 2 39 39 H 1.08001 * 120.31460 * 359.75380 * 10 9 7 40 40 H 1.08004 * 119.18675 * 179.97438 * 11 10 9 41 41 H 1.09003 * 109.59122 * 66.42692 * 19 6 5 42 42 H 1.09000 * 109.58597 * 186.71133 * 19 6 5 43 43 H 1.09000 * 109.49415 * 174.58872 * 20 19 6 44 44 H 1.08999 * 109.49148 * 294.68254 * 20 19 6 45 45 H 0.97000 * 120.00368 * 265.00217 * 23 21 20 46 46 H 0.97006 * 119.99319 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6048 1.9828 0.8406 5 6 1.6377 2.1272 -1.3050 6 7 2.2452 3.4643 -1.3508 7 6 1.4857 4.5564 -1.5674 8 8 2.0079 5.6493 -1.6688 9 6 0.0173 4.4251 -1.6816 10 6 -0.5581 3.5182 -2.5711 11 6 -1.9389 3.4252 -2.6491 12 7 -2.7242 4.1731 -1.9038 13 6 -2.2399 5.0508 -1.0418 14 7 -2.7944 5.9412 -0.1573 15 1 -3.7431 6.0803 -0.0105 16 7 -1.8389 6.5605 0.4443 17 7 -0.6836 6.1631 0.0397 18 6 -0.8473 5.2136 -0.8973 19 6 3.6953 3.5887 -1.1500 20 6 4.0737 2.8880 0.1588 21 6 3.5653 1.4449 0.1257 22 1 3.8546 0.9368 1.0455 23 7 4.1504 0.7475 -1.0220 24 6 5.3877 0.1705 -0.9145 25 1 5.9318 0.2293 0.0165 26 6 5.9424 -0.4900 -2.0021 27 7 5.2789 -0.5620 -3.1366 28 14 7.6298 -1.2776 -1.8553 29 1 8.1614 -1.0575 -0.4862 30 1 7.5199 -2.7355 -2.1155 31 1 8.5498 -0.6656 -2.8473 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 -0.3633 0.5138 -0.8899 35 1 1.8933 -0.5139 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 0.5523 2.2173 -1.3493 38 1 1.9922 1.5357 -2.1491 39 1 0.0663 2.8972 -3.1964 40 1 -2.3813 2.7221 -3.3393 41 1 4.2210 3.1187 -1.9812 42 1 3.9674 4.6427 -1.0946 43 1 5.1578 2.8893 0.2718 44 1 3.6193 3.4148 0.9979 45 1 3.6615 0.6943 -1.8581 46 1 5.6665 -1.0239 -3.8965 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037891941.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:20 Heat of formation + Delta-G solvation = 110.332756 kcal Electronic energy + Delta-G solvation = -31226.745896 eV Core-core repulsion = 27154.173300 eV Total energy + Delta-G solvation = -4072.572596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.69801 -40.48930 -39.06897 -37.90200 -34.58215 -34.33188 -33.83687 -32.58617 -31.52354 -31.13299 -29.52614 -28.51592 -26.23130 -24.89672 -24.17289 -24.02949 -23.62086 -22.93829 -21.07394 -20.34745 -19.15006 -18.84886 -18.04442 -17.51525 -17.29517 -16.89872 -16.06307 -15.83229 -15.24654 -14.90840 -14.63304 -14.46090 -14.02542 -13.85290 -13.61414 -13.50572 -13.32070 -13.12683 -12.82822 -12.66912 -12.58733 -12.25032 -12.02905 -11.96682 -11.75022 -11.55432 -11.12880 -10.97040 -10.83146 -10.76071 -10.40376 -10.39660 -10.26224 -10.20161 -9.91329 -9.68650 -9.65170 -9.45937 -9.26534 -8.95214 -8.33256 -7.00805 -5.82864 -3.10673 -0.14990 0.57054 1.81932 1.92132 2.61228 2.93987 3.25697 3.39958 3.44511 3.46999 3.48200 3.92237 4.07686 4.23429 4.48355 4.55241 4.84656 4.92828 5.04153 5.14119 5.17303 5.21654 5.46681 5.49555 5.50955 5.55788 5.59470 5.71371 5.74005 5.81950 5.85926 5.95100 6.02998 6.15236 6.24530 6.26945 6.28574 6.40253 6.49476 6.53406 6.70138 6.74245 6.87393 6.94124 7.15623 7.52783 7.67421 7.84516 8.17387 8.35970 9.48135 10.03285 10.38610 11.39690 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.003179 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.327050 B = 8805.165708 C = 9255.878461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.066 0.934 5 C 0.102 3.898 6 N -0.587 5.587 7 C 0.555 3.445 8 O -0.520 6.520 9 C 0.008 3.992 10 C -0.147 4.147 11 C 0.166 3.834 12 N -0.465 5.465 13 C 0.218 3.782 14 N -0.407 5.407 15 H 0.457 0.543 16 N 0.003 4.997 17 N -0.220 5.220 18 C -0.005 4.005 19 C 0.121 3.879 20 C -0.150 4.150 21 C 0.179 3.821 22 H 0.052 0.948 23 N -0.718 5.718 24 C -0.236 4.236 25 H 0.070 0.930 26 C -0.011 4.011 27 N -0.932 5.932 28 Si 0.903 3.097 29 H -0.281 1.281 30 H -0.293 1.293 31 H -0.293 1.293 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.164 0.836 40 H 0.184 0.816 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.383 0.617 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.365 6.154 2.960 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.084 0.916 5 C -0.021 4.021 6 N -0.319 5.319 7 C 0.341 3.659 8 O -0.397 6.397 9 C -0.009 4.009 10 C -0.171 4.171 11 C -0.005 4.005 12 N -0.179 5.179 13 C -0.025 4.025 14 N -0.137 5.137 15 H 0.305 0.695 16 N 0.020 4.980 17 N -0.096 5.096 18 C -0.133 4.133 19 C 0.000 4.000 20 C -0.191 4.191 21 C 0.068 3.932 22 H 0.070 0.930 23 N -0.360 5.360 24 C -0.367 4.367 25 H 0.088 0.912 26 C -0.207 4.207 27 N -0.581 5.581 28 Si 0.735 3.265 29 H -0.206 1.206 30 H -0.220 1.220 31 H -0.220 1.220 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.182 0.818 40 H 0.201 0.799 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.218 0.782 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.356 7.721 4.009 20.313 hybrid contribution 0.707 -1.116 -0.817 1.553 sum -17.649 6.605 3.192 19.113 Atomic orbital electron populations 1.21852 0.96973 1.01219 1.00943 1.21432 0.94047 0.95657 1.03729 1.21684 0.97946 0.96149 0.96684 0.91573 1.22076 0.97757 0.82483 0.99752 1.48056 1.09001 1.06037 1.68807 1.17870 0.85090 0.84716 0.78242 1.90821 1.73063 1.25846 1.49925 1.19622 0.94286 0.92951 0.93996 1.22503 0.97002 0.98275 0.99271 1.22869 0.89387 0.94234 0.94054 1.66332 1.40906 1.05202 1.05415 1.19829 0.89665 0.96443 0.96591 1.44662 1.11391 1.28444 1.29230 0.69458 1.78213 0.90954 1.14413 1.14457 1.75467 1.13669 1.10169 1.10319 1.20076 0.92709 1.00016 1.00517 1.21662 0.77485 1.01390 0.99496 1.22536 1.01990 0.98854 0.95705 1.20223 0.89364 0.90843 0.92734 0.92992 1.42448 1.19177 1.63948 1.10453 1.19259 0.93620 1.26720 0.97102 0.91193 1.24679 0.98532 1.01487 0.95999 1.69646 1.38061 1.48163 1.02218 0.86174 0.84309 0.78842 0.77183 1.20644 1.22010 1.21977 0.92918 0.93557 0.93101 0.90219 0.91813 0.90216 0.89718 0.81810 0.79893 0.89530 0.90093 0.90525 0.93254 0.78200 0.93609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.67 37.16 0.36 -1.32 16 2 C -0.11 -1.54 5.19 -26.73 -0.14 -1.68 16 3 C -0.10 -1.53 2.12 -90.72 -0.19 -1.72 16 4 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 5 C 0.10 1.40 4.10 -3.92 -0.02 1.39 16 6 N -0.59 -9.21 2.98 -174.13 -0.52 -9.73 16 7 C 0.56 9.14 7.28 -12.32 -0.09 9.05 16 8 O -0.52 -10.39 16.51 5.33 0.09 -10.30 16 9 C 0.01 0.11 4.96 -104.51 -0.52 -0.41 16 10 C -0.15 -1.40 7.51 -38.99 -0.29 -1.69 16 11 C 0.17 1.30 11.14 -17.52 -0.20 1.10 16 12 N -0.46 -4.58 10.35 -12.38 -0.13 -4.71 16 13 C 0.22 2.49 8.56 -156.21 -1.34 1.15 16 14 N -0.41 -3.83 7.06 31.11 0.22 -3.61 16 15 H 0.46 2.28 8.96 -190.25 -1.71 0.58 16 16 N 0.00 0.03 13.29 60.35 0.80 0.83 16 17 N -0.22 -3.41 12.42 32.23 0.40 -3.01 16 18 C 0.00 -0.07 7.14 -84.72 -0.61 -0.67 16 19 C 0.12 2.10 6.17 -3.71 -0.02 2.07 16 20 C -0.15 -2.56 5.78 -26.61 -0.15 -2.72 16 21 C 0.18 3.18 2.53 -67.89 -0.17 3.01 16 22 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 23 N -0.72 -15.61 3.72 -53.39 -0.20 -15.81 16 24 C -0.24 -5.96 9.93 -15.06 -0.15 -6.11 16 25 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 26 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 27 N -0.93 -26.05 13.06 55.49 0.72 -25.33 16 28 Si 0.90 21.41 29.55 -169.99 -5.02 16.38 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 31 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.50 6.70 -51.93 -0.35 0.15 16 35 H 0.08 1.29 7.70 -51.93 -0.40 0.89 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 0.91 3.40 -51.93 -0.18 0.73 16 38 H 0.08 1.26 6.64 -51.93 -0.34 0.92 16 39 H 0.16 1.26 7.33 -52.49 -0.38 0.87 16 40 H 0.18 0.67 8.06 -52.48 -0.42 0.25 16 41 H 0.09 1.68 7.74 -51.93 -0.40 1.28 16 42 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.38 8.75 5.95 -40.82 -0.24 8.51 16 46 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 370.42 15.07 5.58 5.58 Total: -1.00 -32.76 370.42 -8.97 -41.73 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -7.29 Total: 6.92 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -3.62 Total: 1.06 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 1.30 Total: -61.37 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.76 -8.97 -41.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037891941.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.059 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds