Wall clock time and date at job start Wed Apr 1 2020 02:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47002 * 2 1 4 4 H 1.09000 * 109.50184 * 55.06539 * 3 2 1 5 5 C 1.53196 * 109.49627 * 294.99907 * 3 2 1 6 6 N 1.46920 * 108.77711 * 185.41528 * 5 3 2 7 7 C 1.34779 * 120.63307 * 233.63651 * 6 5 3 8 8 O 1.21548 * 119.99494 * 356.08325 * 7 6 5 9 9 C 1.47874 * 120.00231 * 176.08885 * 7 6 5 10 10 C 1.39443 * 121.11535 * 52.72439 * 9 7 6 11 11 C 1.38624 * 119.37300 * 179.72953 * 10 9 7 12 12 N 1.31583 * 121.63564 * 0.56361 * 11 10 9 13 13 C 1.32208 * 121.86971 * 359.71518 * 12 11 10 14 14 N 1.37209 * 134.67960 * 180.02562 * 13 12 11 15 15 H 0.97005 * 125.86593 * 359.97438 * 14 13 12 16 16 N 1.28777 * 108.26540 * 180.02562 * 14 13 12 17 17 N 1.28693 * 111.75624 * 359.97438 * 16 14 13 18 18 C 1.34389 * 109.15387 * 359.97438 * 17 16 14 19 19 C 1.46931 * 118.74006 * 53.60855 * 6 5 3 20 20 C 1.53193 * 108.77483 * 306.39331 * 19 6 5 21 21 C 1.53043 * 109.31124 * 54.63578 * 20 19 6 22 22 H 1.08991 * 109.46185 * 58.65058 * 21 20 19 23 23 N 1.46497 * 109.45785 * 178.61301 * 21 20 19 24 24 C 1.36935 * 120.00420 * 275.06709 * 23 21 20 25 25 H 1.08005 * 119.99640 * 359.97438 * 24 23 21 26 26 C 1.38810 * 120.00353 * 180.02562 * 24 23 21 27 27 N 1.31618 * 119.99816 * 180.02562 * 26 24 23 28 28 Si 1.86798 * 119.99933 * 359.97438 * 26 24 23 29 29 H 1.48496 * 109.47123 * 90.00424 * 28 26 24 30 30 H 1.48502 * 109.46806 * 210.00333 * 28 26 24 31 31 H 1.48502 * 109.47177 * 329.99863 * 28 26 24 32 32 H 1.09002 * 109.47381 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47672 * 59.99844 * 1 2 3 34 34 H 1.09002 * 109.47295 * 299.99886 * 1 2 3 35 35 H 1.08997 * 109.47928 * 119.99714 * 2 1 3 36 36 H 1.09002 * 109.47295 * 240.00114 * 2 1 3 37 37 H 1.08997 * 109.58861 * 305.20395 * 5 3 2 38 38 H 1.09001 * 109.58335 * 65.48480 * 5 3 2 39 39 H 1.08000 * 120.31728 * 359.97438 * 10 9 7 40 40 H 1.08010 * 119.18172 * 180.28182 * 11 10 9 41 41 H 1.08998 * 109.58593 * 66.18254 * 19 6 5 42 42 H 1.08995 * 109.58687 * 186.60631 * 19 6 5 43 43 H 1.08994 * 109.49678 * 174.58457 * 20 19 6 44 44 H 1.09000 * 109.49641 * 294.65002 * 20 19 6 45 45 H 0.97007 * 119.99624 * 95.06548 * 23 21 20 46 46 H 0.97001 * 120.00076 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9817 0.8423 5 6 1.6349 2.1280 -1.3088 6 7 2.2413 3.4656 -1.3495 7 6 1.4813 4.5580 -1.5629 8 8 0.2943 4.4366 -1.7947 9 6 2.0915 5.9041 -1.5152 10 6 3.2187 6.2117 -2.2762 11 6 3.7578 7.4871 -2.2081 12 7 3.2387 8.4153 -1.4333 13 6 2.1743 8.1841 -0.6840 14 7 1.4324 8.9321 0.1951 15 1 1.5951 9.8588 0.4310 16 7 0.4837 8.1920 0.6541 17 7 0.5219 7.0052 0.1578 18 6 1.5567 6.9171 -0.6952 19 6 3.6921 3.5899 -1.1524 20 6 4.0740 2.8881 0.1547 21 6 3.5655 1.4450 0.1215 22 1 3.9988 0.9268 -0.7339 23 7 3.9578 0.7609 1.3561 24 6 5.1962 0.1851 1.4561 25 1 5.8836 0.2349 0.6246 26 6 5.5677 -0.4636 2.6258 27 7 6.7582 -1.0165 2.7219 28 14 4.3786 -0.5504 4.0637 29 1 3.5453 -1.7737 3.9438 30 1 5.1430 -0.5949 5.3361 31 1 3.5022 0.6484 4.0545 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3634 0.5138 0.8900 35 1 1.8934 -0.5137 0.8899 36 1 1.8933 -0.5138 -0.8900 37 1 1.9906 1.5397 -2.1547 38 1 0.5494 2.2151 -1.3550 39 1 3.6652 5.4647 -2.9157 40 1 4.6282 7.7233 -2.8024 41 1 4.2155 3.1209 -1.9855 42 1 3.9639 4.6438 -1.0942 43 1 5.1584 2.8893 0.2648 44 1 3.6223 3.4143 0.9956 45 1 3.3403 0.7158 2.1029 46 1 7.0177 -1.4701 3.5391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037891943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:23 Heat of formation + Delta-G solvation = 112.382611 kcal Electronic energy + Delta-G solvation = -30668.832653 eV Core-core repulsion = 26596.348946 eV Total energy + Delta-G solvation = -4072.483707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.77529 -40.62184 -39.18751 -37.93047 -35.05016 -34.56043 -33.92090 -32.36160 -31.81149 -31.22810 -29.97460 -28.97398 -26.37388 -24.96050 -24.39379 -23.99192 -23.31249 -22.43872 -20.91892 -20.68673 -19.76776 -19.15305 -18.36617 -17.74356 -17.42881 -16.97572 -16.29081 -15.93962 -15.50436 -15.02552 -14.88471 -14.35947 -14.13229 -13.83754 -13.63587 -13.58568 -13.40649 -13.30253 -12.86320 -12.72859 -12.67257 -12.42906 -12.15819 -12.05978 -11.90195 -11.80552 -11.44642 -11.06580 -11.05555 -10.83822 -10.55664 -10.45402 -10.34533 -10.23143 -9.82767 -9.79483 -9.62567 -9.59545 -9.41409 -8.95813 -8.66658 -7.31390 -5.81864 -3.17290 -0.24396 0.47456 1.74918 1.84777 2.40626 2.73822 3.13440 3.34777 3.35048 3.38471 3.43309 3.82248 3.95056 4.10607 4.38132 4.55313 4.70828 4.82678 4.94688 4.99480 5.06285 5.10509 5.16668 5.29546 5.34265 5.41579 5.49161 5.54906 5.55776 5.73987 5.76116 5.86627 5.96187 6.00173 6.04708 6.19973 6.20733 6.22191 6.31034 6.38897 6.50175 6.66987 6.74431 6.89817 7.07250 7.24565 7.77564 7.93393 7.94215 8.37342 9.15512 9.88552 10.08300 11.36355 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012461 B = 0.003233 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.481060 B = 8659.634421 C = 9259.730092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.112 4.112 3 C -0.110 4.110 4 H 0.070 0.930 5 C 0.121 3.879 6 N -0.595 5.595 7 C 0.559 3.441 8 O -0.517 6.517 9 C 0.005 3.995 10 C -0.146 4.146 11 C 0.166 3.834 12 N -0.463 5.463 13 C 0.219 3.781 14 N -0.405 5.405 15 H 0.458 0.542 16 N 0.006 4.994 17 N -0.221 5.221 18 C -0.004 4.004 19 C 0.095 3.905 20 C -0.153 4.153 21 C 0.189 3.811 22 H 0.059 0.941 23 N -0.745 5.745 24 C -0.243 4.243 25 H 0.091 0.909 26 C 0.007 3.993 27 N -0.933 5.933 28 Si 0.880 3.120 29 H -0.283 1.283 30 H -0.292 1.292 31 H -0.277 1.277 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.163 0.837 40 H 0.185 0.815 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.361 0.639 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.477 17.543 -12.079 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.130 4.130 4 H 0.089 0.911 5 C -0.001 4.001 6 N -0.327 5.327 7 C 0.345 3.655 8 O -0.393 6.393 9 C -0.011 4.011 10 C -0.169 4.169 11 C -0.007 4.007 12 N -0.177 5.177 13 C -0.025 4.025 14 N -0.136 5.136 15 H 0.307 0.693 16 N 0.023 4.977 17 N -0.097 5.097 18 C -0.133 4.133 19 C -0.027 4.027 20 C -0.194 4.194 21 C 0.079 3.921 22 H 0.077 0.923 23 N -0.386 5.386 24 C -0.373 4.373 25 H 0.108 0.892 26 C -0.189 4.189 27 N -0.581 5.581 28 Si 0.710 3.290 29 H -0.210 1.210 30 H -0.218 1.218 31 H -0.204 1.204 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.112 0.888 39 H 0.181 0.819 40 H 0.201 0.799 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.194 0.806 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.816 18.066 -11.202 23.013 hybrid contribution 0.071 -0.076 0.791 0.798 sum -8.745 17.991 -10.411 22.551 Atomic orbital electron populations 1.21864 0.96552 1.01241 1.01564 1.21452 0.94606 0.95490 1.03473 1.21857 0.97673 0.96423 0.97069 0.91128 1.21802 0.99668 0.80675 0.97918 1.48083 1.08670 1.06426 1.69501 1.17886 0.86232 0.83371 0.77983 1.90829 1.14532 1.85916 1.47993 1.19541 0.93887 0.93473 0.94229 1.22441 0.94757 0.99366 1.00383 1.22868 0.97660 0.87297 0.92831 1.66322 1.08618 1.36234 1.06476 1.19829 0.95483 0.90003 0.97147 1.44688 1.21356 1.15225 1.32288 0.69348 1.78228 1.06247 0.97890 1.15350 1.75476 1.16627 1.08617 1.08974 1.20085 0.97152 0.94606 1.01450 1.22186 0.79039 1.01745 0.99764 1.22664 1.02725 0.98877 0.95111 1.20158 0.90627 0.90519 0.90785 0.92322 1.42785 1.16656 1.66206 1.12995 1.19039 0.90655 1.27097 1.00473 0.89157 1.24639 0.96380 1.00219 0.97626 1.69691 1.19220 1.41474 1.27682 0.86624 0.80993 0.77887 0.83474 1.20983 1.21801 1.20371 0.92989 0.92871 0.93012 0.90460 0.91817 0.90899 0.88790 0.81906 0.79866 0.90451 0.90088 0.89886 0.92353 0.80580 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.67 37.15 0.36 -1.61 16 2 C -0.11 -1.64 5.31 -26.73 -0.14 -1.78 16 3 C -0.11 -1.65 1.93 -90.49 -0.17 -1.82 16 4 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 5 C 0.12 1.60 5.31 -3.71 -0.02 1.58 16 6 N -0.59 -7.64 2.97 -173.87 -0.52 -8.16 16 7 C 0.56 7.97 7.28 -12.32 -0.09 7.88 16 8 O -0.52 -9.09 16.52 5.32 0.09 -9.01 16 9 C 0.01 0.06 4.96 -104.51 -0.52 -0.46 16 10 C -0.15 -1.12 7.52 -38.99 -0.29 -1.42 16 11 C 0.17 1.10 11.14 -17.52 -0.20 0.90 16 12 N -0.46 -4.29 10.35 -12.38 -0.13 -4.41 16 13 C 0.22 2.40 8.56 -156.21 -1.34 1.06 16 14 N -0.41 -3.74 7.06 31.11 0.22 -3.52 16 15 H 0.46 2.23 8.96 -190.25 -1.71 0.53 16 16 N 0.01 0.07 13.29 60.35 0.80 0.87 16 17 N -0.22 -3.34 12.42 32.23 0.40 -2.94 16 18 C 0.00 -0.06 7.14 -84.72 -0.61 -0.66 16 19 C 0.10 1.08 5.53 -3.71 -0.02 1.06 16 20 C -0.15 -2.33 5.66 -26.61 -0.15 -2.48 16 21 C 0.19 3.25 2.19 -67.89 -0.15 3.10 16 22 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 23 N -0.74 -16.34 4.14 -53.39 -0.22 -16.56 16 24 C -0.24 -6.42 10.41 -15.06 -0.16 -6.57 16 25 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 26 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 27 N -0.93 -28.41 13.97 55.49 0.78 -27.64 16 28 Si 0.88 21.67 27.74 -169.99 -4.71 16.96 16 29 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 31 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.62 6.69 -51.93 -0.35 0.28 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.32 7.22 -51.93 -0.37 0.94 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.31 5.74 -51.93 -0.30 1.01 16 39 H 0.16 0.78 7.31 -52.49 -0.38 0.40 16 40 H 0.18 0.43 8.06 -52.48 -0.42 0.01 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.77 4.67 -51.93 -0.24 0.53 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.36 8.07 5.37 -40.82 -0.22 7.85 16 46 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -35.51 370.92 -8.68 -44.20 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -7.39 Total: 5.73 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -3.59 Total: -1.11 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: 1.33 Total: -62.36 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.01 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.51 -8.68 -44.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037891943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.578 kcal (2) G-P(sol) polarization free energy of solvation -35.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds