Wall clock time and date at job start Wed Apr 1 2020 02:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47301 * 2 1 4 4 H 1.08998 * 109.49651 * 304.93369 * 3 2 1 5 5 C 1.53194 * 109.50030 * 64.99823 * 3 2 1 6 6 N 1.46919 * 108.77480 * 174.58805 * 5 3 2 7 7 C 1.34776 * 120.63091 * 126.41697 * 6 5 3 8 8 O 1.21564 * 120.00184 * 354.17063 * 7 6 5 9 9 C 1.47823 * 120.00029 * 174.17159 * 7 6 5 10 10 C 1.41569 * 120.37715 * 319.12903 * 9 7 6 11 11 C 1.34821 * 120.11670 * 179.77586 * 10 9 7 12 12 N 1.36063 * 120.82427 * 0.48713 * 11 10 9 13 13 N 1.40249 * 133.72455 * 179.74484 * 12 11 10 14 14 N 1.28970 * 107.01759 * 180.02562 * 13 12 11 15 15 N 1.28543 * 110.84355 * 0.02562 * 14 13 12 16 16 C 1.32622 * 110.18660 * 359.97438 * 15 14 13 17 17 C 1.38463 * 120.37088 * 139.40625 * 9 7 6 18 18 C 1.46925 * 118.74139 * 306.38668 * 6 5 3 19 19 C 1.53195 * 108.77458 * 53.61298 * 18 6 5 20 20 C 1.53040 * 109.30949 * 305.36507 * 19 18 6 21 21 H 1.08993 * 109.46415 * 301.34531 * 20 19 18 22 22 N 1.46506 * 109.45984 * 181.38202 * 20 19 18 23 23 C 1.36938 * 119.99654 * 84.93193 * 22 20 19 24 24 H 1.08002 * 120.00011 * 0.02562 * 23 22 20 25 25 C 1.38806 * 119.99740 * 180.02562 * 23 22 20 26 26 N 1.31621 * 120.00464 * 359.97438 * 25 23 22 27 27 Si 1.86804 * 120.00233 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47185 * 59.99559 * 27 25 23 29 29 H 1.48495 * 109.47388 * 180.02562 * 27 25 23 30 30 H 1.48506 * 109.46703 * 300.00135 * 27 25 23 31 31 H 1.09004 * 109.46669 * 60.00382 * 1 2 3 32 32 H 1.09000 * 109.47150 * 300.00458 * 1 2 3 33 33 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46937 * 120.00077 * 2 1 3 35 35 H 1.09000 * 109.47150 * 239.99542 * 2 1 3 36 36 H 1.09002 * 109.58422 * 294.37603 * 5 3 2 37 37 H 1.08994 * 109.58479 * 54.80045 * 5 3 2 38 38 H 1.08000 * 119.93961 * 0.02562 * 10 9 7 39 39 H 1.07999 * 119.58809 * 180.23957 * 11 10 9 40 40 H 1.07996 * 120.52131 * 0.02562 * 17 9 7 41 41 H 1.09004 * 109.59023 * 173.39831 * 18 6 5 42 42 H 1.09000 * 109.58739 * 293.82689 * 18 6 5 43 43 H 1.09003 * 109.49470 * 65.31243 * 19 18 6 44 44 H 1.08997 * 109.49877 * 185.38389 * 19 18 6 45 45 H 0.96994 * 119.99714 * 264.93639 * 22 20 19 46 46 H 0.97002 * 120.00588 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6066 1.9815 -0.8423 5 6 1.6351 2.1280 1.3088 6 7 2.2416 3.4656 1.3492 7 6 1.4817 4.5579 1.5636 8 8 0.2718 4.4551 1.6201 9 6 2.1197 5.8810 1.7301 10 6 3.3071 6.0127 2.4895 11 6 3.8870 7.2212 2.6342 12 7 3.3400 8.3296 2.0653 13 7 3.6987 9.6853 2.0432 14 7 2.8072 10.3002 1.3428 15 7 1.9154 9.4792 0.9149 16 6 2.1900 8.2492 1.3278 17 6 1.5594 7.0063 1.1497 18 6 3.6923 3.5898 1.1522 19 6 4.0742 2.8879 -0.1548 20 6 3.5657 1.4448 -0.1216 21 1 3.9989 0.9267 0.7338 22 7 3.9579 0.7606 -1.3563 23 6 5.1963 0.1847 -1.4561 24 1 5.8837 0.2346 -0.6246 25 6 5.5681 -0.4631 -2.6260 26 7 4.7302 -0.5244 -3.6393 27 14 7.2571 -1.2493 -2.7621 28 1 7.4046 -2.2901 -1.7133 29 1 7.4071 -1.8714 -4.1021 30 1 8.3027 -0.2107 -2.5793 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 0.5497 2.2174 1.3538 37 1 1.9908 1.5398 2.1546 38 1 3.7515 5.1429 2.9505 39 1 4.7949 7.3113 3.2122 40 1 0.6512 6.9301 0.5702 41 1 3.9643 4.6438 1.0939 42 1 4.2157 3.1207 1.9854 43 1 3.6220 3.4137 -0.9957 44 1 5.1586 2.8895 -0.2652 45 1 3.3404 0.7156 -2.1029 46 1 4.9902 -0.9768 -4.4570 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037903595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:01 Heat of formation + Delta-G solvation = 130.677536 kcal Electronic energy + Delta-G solvation = -30179.968950 eV Core-core repulsion = 26108.278570 eV Total energy + Delta-G solvation = -4071.690380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.78029 -40.85215 -38.90392 -37.92256 -35.10728 -34.42280 -33.88645 -32.59143 -31.87494 -30.98538 -29.70114 -28.97004 -26.34829 -25.31689 -24.61624 -23.95211 -23.28695 -22.88929 -21.04705 -20.56805 -19.63673 -18.97092 -18.37428 -17.30656 -17.21591 -16.81220 -16.47454 -15.74565 -15.56879 -15.05463 -14.99354 -14.27553 -14.12942 -13.88110 -13.80975 -13.51816 -13.45374 -13.39706 -13.16110 -12.94946 -12.81141 -12.49617 -12.25631 -12.09525 -11.87458 -11.78524 -11.45073 -11.42905 -11.05050 -10.97200 -10.84336 -10.59914 -10.50447 -10.33571 -10.27660 -10.17980 -9.83559 -9.73170 -9.13418 -8.99913 -8.77626 -7.07586 -5.86898 -3.16493 -0.32849 -0.05968 1.25611 1.67413 2.11276 2.45490 2.79940 3.26109 3.35474 3.40436 3.42203 3.54975 3.80394 3.99454 4.35501 4.43113 4.48491 4.74684 4.78624 4.95410 5.04244 5.06213 5.11815 5.13964 5.24018 5.28432 5.33729 5.41426 5.49177 5.51878 5.54696 5.73113 5.81341 5.83989 5.96591 6.01057 6.13794 6.20305 6.23338 6.33284 6.37235 6.52455 6.67746 6.83305 6.90387 7.10618 7.58104 7.74540 7.94888 8.30858 9.42544 9.98775 10.33170 11.35159 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012604 B = 0.002832 C = 0.002464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.998356 B = 9886.327845 C =11359.934184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.105 4.105 4 H 0.072 0.928 5 C 0.118 3.882 6 N -0.592 5.592 7 C 0.559 3.441 8 O -0.524 6.524 9 C -0.058 4.058 10 C -0.114 4.114 11 C 0.106 3.894 12 N -0.296 5.296 13 N -0.109 5.109 14 N -0.008 5.008 15 N -0.314 5.314 16 C 0.241 3.759 17 C -0.033 4.033 18 C 0.095 3.905 19 C -0.153 4.153 20 C 0.184 3.816 21 H 0.049 0.951 22 N -0.719 5.719 23 C -0.243 4.243 24 H 0.069 0.931 25 C -0.010 4.010 26 N -0.930 5.930 27 Si 0.905 3.095 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.178 0.822 39 H 0.189 0.811 40 H 0.177 0.823 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.079 0.921 45 H 0.385 0.615 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.212 9.898 14.854 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.090 0.910 5 C -0.003 4.003 6 N -0.324 5.324 7 C 0.345 3.655 8 O -0.401 6.401 9 C -0.070 4.070 10 C -0.137 4.137 11 C -0.021 4.021 12 N -0.076 5.076 13 N -0.092 5.092 14 N -0.001 5.001 15 N -0.174 5.174 16 C -0.013 4.013 17 C -0.057 4.057 18 C -0.028 4.028 19 C -0.195 4.195 20 C 0.073 3.927 21 H 0.067 0.933 22 N -0.360 5.360 23 C -0.374 4.374 24 H 0.087 0.913 25 C -0.206 4.206 26 N -0.578 5.578 27 Si 0.736 3.264 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.195 0.805 39 H 0.206 0.794 40 H 0.194 0.806 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.097 0.903 45 H 0.219 0.781 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.418 11.376 14.727 19.126 hybrid contribution 1.055 -1.312 -0.288 1.708 sum -3.363 10.064 14.439 17.918 Atomic orbital electron populations 1.21852 0.96719 1.01167 1.01334 1.21452 0.94430 0.95488 1.03609 1.21800 0.97720 0.96451 0.96570 0.90995 1.21892 0.99653 0.80431 0.98369 1.48088 1.08756 1.06641 1.68889 1.17814 0.86563 0.83148 0.77937 1.90847 1.13058 1.85475 1.50747 1.20343 0.94839 0.94749 0.97081 1.21372 0.95024 0.97365 0.99977 1.21596 1.00413 0.82183 0.97862 1.49033 1.17787 1.08930 1.31846 1.82818 1.20738 0.81687 1.23923 1.77895 0.96553 1.22697 1.02948 1.75269 1.21426 0.96001 1.24751 1.22723 0.87869 0.96576 0.94171 1.20698 1.00280 0.85411 0.99309 1.22268 0.79030 1.01396 1.00083 1.22733 1.02494 0.99441 0.94784 1.20185 0.90695 0.90377 0.91450 0.93288 1.42396 1.16532 1.64341 1.12683 1.19136 0.91823 1.27782 0.98631 0.91277 1.24732 0.98120 1.01363 0.96408 1.69640 1.35330 1.48101 1.04722 0.86314 0.84085 0.79191 0.76820 1.21259 1.21721 1.21310 0.92919 0.93212 0.93097 0.92377 0.89686 0.88721 0.90970 0.80505 0.79392 0.80556 0.90148 0.90643 0.92034 0.90260 0.78135 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.67 37.16 0.36 -1.51 16 2 C -0.11 -1.59 5.31 -26.73 -0.14 -1.73 16 3 C -0.11 -1.47 1.93 -90.50 -0.17 -1.65 16 4 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 5 C 0.12 1.36 5.33 -3.71 -0.02 1.34 16 6 N -0.59 -6.22 2.97 -173.89 -0.52 -6.74 16 7 C 0.56 6.15 7.33 -12.34 -0.09 6.06 16 8 O -0.52 -7.44 16.36 5.31 0.09 -7.36 16 9 C -0.06 -0.50 5.11 -104.62 -0.53 -1.03 16 10 C -0.11 -0.63 7.35 -39.52 -0.29 -0.92 16 11 C 0.11 0.62 11.19 -16.89 -0.19 0.43 16 12 N -0.30 -2.94 3.94 -12.43 -0.05 -2.99 16 13 N -0.11 -1.33 13.98 60.35 0.84 -0.49 16 14 N -0.01 -0.11 13.35 60.35 0.81 0.70 16 15 N -0.31 -4.22 12.27 31.03 0.38 -3.84 16 16 C 0.24 2.68 8.02 -156.36 -1.25 1.42 16 17 C -0.03 -0.31 9.76 -38.65 -0.38 -0.69 16 18 C 0.09 0.88 4.92 -3.71 -0.02 0.86 16 19 C -0.15 -2.13 5.66 -26.61 -0.15 -2.28 16 20 C 0.18 2.99 2.19 -67.88 -0.15 2.84 16 21 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 22 N -0.72 -15.79 4.33 -53.38 -0.23 -16.02 16 23 C -0.24 -6.07 9.93 -15.06 -0.15 -6.22 16 24 H 0.07 1.67 7.83 -52.49 -0.41 1.25 16 25 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 26 N -0.93 -26.49 13.06 55.49 0.72 -25.76 16 27 Si 0.90 21.08 29.55 -169.99 -5.02 16.05 16 28 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.54 6.70 -51.93 -0.35 0.20 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.50 7.22 -51.93 -0.37 1.13 16 36 H 0.09 1.15 5.71 -51.93 -0.30 0.85 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.18 0.51 6.69 -52.49 -0.35 0.16 16 39 H 0.19 0.42 8.06 -52.49 -0.42 0.00 16 40 H 0.18 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.08 0.59 4.77 -51.93 -0.25 0.34 16 42 H 0.08 0.56 8.13 -51.93 -0.42 0.14 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.38 9.28 7.51 -40.82 -0.31 8.97 16 46 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -31.95 374.39 -6.73 -38.68 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.12 Total: 5.57 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -3.28 Total: -3.44 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: 1.96 Total: -55.15 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: 0.09 Total: -7.36 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.95 -6.73 -38.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037903595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.357 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds