Wall clock time and date at job start Wed Apr 1 2020 02:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47381 * 2 1 4 4 H 1.08999 * 109.52242 * 55.08074 * 3 2 1 5 5 C 1.53190 * 109.49611 * 294.99774 * 3 2 1 6 6 N 1.46923 * 108.77483 * 185.41033 * 5 3 2 7 7 C 1.34776 * 120.63223 * 233.63049 * 6 5 3 8 8 O 1.21556 * 120.00144 * 356.21327 * 7 6 5 9 9 C 1.47826 * 120.00263 * 176.21483 * 7 6 5 10 10 C 1.41576 * 120.37249 * 50.41536 * 9 7 6 11 11 C 1.34820 * 120.11117 * 179.71049 * 10 9 7 12 12 N 1.36057 * 120.82970 * 0.57632 * 11 10 9 13 13 N 1.40250 * 133.73388 * 179.70395 * 12 11 10 14 14 N 1.28966 * 107.02130 * 179.97438 * 13 12 11 15 15 N 1.28541 * 110.84519 * 0.02562 * 14 13 12 16 16 C 1.32617 * 110.18371 * 359.97438 * 15 14 13 17 17 C 1.38453 * 120.37344 * 230.69506 * 9 7 6 18 18 C 1.46925 * 118.73785 * 53.61214 * 6 5 3 19 19 C 1.53183 * 108.77631 * 306.38820 * 18 6 5 20 20 C 1.53034 * 109.50020 * 175.16035 * 3 2 1 21 21 H 1.09003 * 109.44839 * 61.30198 * 20 3 2 22 22 N 1.46496 * 109.46176 * 301.33761 * 20 3 2 23 23 C 1.36940 * 120.00769 * 154.92957 * 22 20 3 24 24 H 1.08004 * 119.99016 * 0.02562 * 23 22 20 25 25 C 1.38807 * 120.00722 * 180.02562 * 23 22 20 26 26 N 1.31612 * 120.00171 * 180.02562 * 25 23 22 27 27 Si 1.86797 * 119.99608 * 359.97438 * 25 23 22 28 28 H 1.48499 * 109.47006 * 90.00362 * 27 25 23 29 29 H 1.48506 * 109.47270 * 209.99800 * 27 25 23 30 30 H 1.48499 * 109.47571 * 330.00174 * 27 25 23 31 31 H 1.09000 * 109.46541 * 59.99870 * 1 2 3 32 32 H 1.08992 * 109.46968 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46777 * 300.00475 * 1 2 3 34 34 H 1.08997 * 109.47454 * 239.99671 * 2 1 3 35 35 H 1.09006 * 109.47016 * 119.99612 * 2 1 3 36 36 H 1.09007 * 109.58707 * 65.62543 * 5 3 2 37 37 H 1.09000 * 109.58921 * 305.20182 * 5 3 2 38 38 H 1.08002 * 119.94089 * 359.97438 * 10 9 7 39 39 H 1.08006 * 119.58146 * 180.30291 * 11 10 9 40 40 H 1.08002 * 120.52165 * 0.02569 * 17 9 7 41 41 H 1.09000 * 109.58626 * 66.17690 * 18 6 5 42 42 H 1.09007 * 109.58688 * 186.60293 * 18 6 5 43 43 H 1.08997 * 109.50249 * 174.58604 * 19 18 6 44 44 H 1.09005 * 109.49903 * 294.65255 * 19 18 6 45 45 H 0.97011 * 120.00242 * 334.93129 * 22 20 3 46 46 H 0.97002 * 120.00101 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6071 1.9819 0.8424 5 6 1.6352 2.1279 -1.3088 6 7 2.2417 3.4655 -1.3493 7 6 1.4817 4.5579 -1.5629 8 8 0.2942 4.4367 -1.7926 9 6 2.0922 5.9035 -1.5179 10 6 3.2638 6.1832 -2.2617 11 6 3.8129 7.4139 -2.2214 12 7 3.2617 8.3987 -1.4615 13 7 3.5976 9.7386 -1.2184 14 7 2.7137 10.2076 -0.4047 15 7 1.8477 9.3074 -0.1014 16 6 2.1326 8.1708 -0.7224 17 6 1.5279 6.9027 -0.7432 18 6 3.6923 3.5898 -1.1522 19 6 4.0742 2.8880 0.1548 20 6 3.5656 1.4449 0.1217 21 1 3.9988 0.9267 -0.7339 22 7 3.9578 0.7608 1.3563 23 6 5.1957 0.1836 1.4559 24 1 5.8830 0.2332 0.6242 25 6 5.5671 -0.4650 2.6255 26 7 6.7570 -1.0192 2.7213 27 14 4.3786 -0.5501 4.0641 28 1 3.5439 -1.7726 3.9449 29 1 5.1435 -0.5952 5.3362 30 1 3.5035 0.6496 4.0549 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8901 36 1 0.5498 2.2173 -1.3539 37 1 1.9909 1.5396 -2.1547 38 1 3.7161 5.4106 -2.8658 39 1 4.7040 7.6192 -2.7961 40 1 0.6369 6.7104 -0.1638 41 1 4.2158 3.1207 -1.9853 42 1 3.9643 4.6437 -1.0940 43 1 5.1586 2.8891 0.2650 44 1 3.6225 3.4142 0.9957 45 1 3.3407 0.7165 2.1035 46 1 7.0167 -1.4722 3.5388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037903597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:04 Heat of formation + Delta-G solvation = 133.996834 kcal Electronic energy + Delta-G solvation = -30309.780192 eV Core-core repulsion = 26238.233747 eV Total energy + Delta-G solvation = -4071.546444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.79652 -40.90328 -38.97259 -38.02442 -35.20507 -34.47107 -34.00304 -32.62994 -31.93553 -31.02122 -30.10000 -29.20337 -26.48455 -25.35383 -24.66277 -24.08111 -23.29234 -22.63137 -21.03732 -20.67121 -19.81615 -19.01410 -18.41459 -17.67804 -17.29735 -16.90898 -16.56576 -15.82003 -15.58125 -15.14095 -14.99298 -14.48705 -14.21799 -13.94379 -13.85997 -13.55652 -13.52373 -13.48882 -13.07399 -12.93119 -12.83361 -12.53503 -12.51191 -12.20204 -12.03938 -11.93049 -11.57004 -11.46087 -11.18623 -11.15500 -10.94873 -10.66090 -10.58721 -10.47814 -10.34304 -10.19686 -9.89150 -9.69110 -9.15854 -9.03783 -8.86253 -7.39600 -5.88358 -3.24650 -0.32520 -0.07896 1.23937 1.66509 2.05995 2.37964 2.71458 3.23743 3.28918 3.31746 3.38303 3.52524 3.77455 3.96014 4.32950 4.41030 4.48765 4.70898 4.72559 4.85303 4.91586 4.96692 5.01104 5.10017 5.14898 5.20347 5.27129 5.36731 5.38977 5.41619 5.45669 5.61752 5.72327 5.80424 5.83448 5.87798 5.90629 6.05988 6.08190 6.20416 6.23579 6.37326 6.55731 6.62501 6.77494 7.03190 7.67887 7.85929 7.93550 8.30501 9.08182 9.81030 9.99955 11.29686 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012506 B = 0.003001 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.335221 B = 9328.379365 C =10462.675705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.110 4.110 4 H 0.071 0.929 5 C 0.120 3.880 6 N -0.592 5.592 7 C 0.560 3.440 8 O -0.524 6.524 9 C -0.055 4.055 10 C -0.115 4.115 11 C 0.109 3.891 12 N -0.296 5.296 13 N -0.108 5.108 14 N -0.007 5.007 15 N -0.315 5.315 16 C 0.242 3.758 17 C -0.038 4.038 18 C 0.094 3.906 19 C -0.154 4.154 20 C 0.188 3.812 21 H 0.059 0.941 22 N -0.744 5.744 23 C -0.246 4.246 24 H 0.090 0.910 25 C 0.008 3.992 26 N -0.932 5.932 27 Si 0.881 3.119 28 H -0.283 1.283 29 H -0.291 1.291 30 H -0.278 1.278 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.178 0.822 39 H 0.190 0.810 40 H 0.175 0.825 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.361 0.639 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.755 11.597 -12.958 19.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.130 4.130 4 H 0.089 0.911 5 C -0.002 4.002 6 N -0.324 5.324 7 C 0.346 3.654 8 O -0.401 6.401 9 C -0.067 4.067 10 C -0.139 4.139 11 C -0.017 4.017 12 N -0.077 5.077 13 N -0.091 5.091 14 N 0.000 5.000 15 N -0.175 5.175 16 C -0.012 4.012 17 C -0.062 4.062 18 C -0.028 4.028 19 C -0.195 4.195 20 C 0.078 3.922 21 H 0.077 0.923 22 N -0.386 5.386 23 C -0.376 4.376 24 H 0.108 0.892 25 C -0.188 4.188 26 N -0.579 5.579 27 Si 0.711 3.289 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.204 1.204 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.195 0.805 39 H 0.207 0.793 40 H 0.193 0.807 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.078 0.922 45 H 0.194 0.806 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.896 13.013 -12.689 20.235 hybrid contribution -0.431 -0.931 0.907 1.370 sum -9.327 12.082 -11.781 19.281 Atomic orbital electron populations 1.21866 0.96527 1.01360 1.01476 1.21461 0.94608 0.95438 1.03591 1.21857 0.97740 0.96505 0.96897 0.91082 1.21861 0.99656 0.80561 0.98142 1.48122 1.08771 1.06566 1.68906 1.17823 0.86182 0.83339 0.78047 1.90853 1.14615 1.86052 1.48582 1.20311 0.94809 0.95179 0.96391 1.21294 0.95335 0.96144 1.01096 1.21602 1.00178 0.85217 0.94749 1.49030 1.18749 1.10796 1.29094 1.82823 1.20991 0.85204 1.20057 1.77894 0.96892 1.20913 1.04340 1.75268 1.21823 0.96096 1.24323 1.22706 0.88190 0.97144 0.93150 1.20625 1.00410 0.86054 0.99078 1.22250 0.78908 1.01610 1.00060 1.22688 1.02931 0.98922 0.94934 1.20158 0.90577 0.90515 0.90910 0.92315 1.42773 1.16756 1.66139 1.12909 1.19017 0.90694 1.27327 1.00517 0.89182 1.24653 0.96386 1.00107 0.97666 1.69686 1.19239 1.41247 1.27706 0.86617 0.80951 0.77834 0.83480 1.20986 1.21752 1.20373 0.92894 0.92927 0.93020 0.91777 0.90382 0.88669 0.90727 0.80528 0.79334 0.80737 0.90310 0.90003 0.89783 0.92165 0.80554 0.92969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.67 37.16 0.36 -1.35 16 2 C -0.11 -1.47 5.31 -26.73 -0.14 -1.61 16 3 C -0.11 -1.42 1.93 -90.50 -0.17 -1.59 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 5 C 0.12 1.29 5.31 -3.71 -0.02 1.27 16 6 N -0.59 -5.88 2.97 -173.89 -0.52 -6.40 16 7 C 0.56 5.84 7.25 -12.34 -0.09 5.75 16 8 O -0.52 -7.13 16.47 5.32 0.09 -7.04 16 9 C -0.06 -0.45 5.02 -104.62 -0.53 -0.98 16 10 C -0.12 -0.61 7.33 -39.52 -0.29 -0.90 16 11 C 0.11 0.62 11.19 -16.89 -0.19 0.43 16 12 N -0.30 -2.92 3.94 -12.43 -0.05 -2.97 16 13 N -0.11 -1.32 13.98 60.35 0.84 -0.47 16 14 N -0.01 -0.10 13.35 60.35 0.81 0.70 16 15 N -0.31 -4.20 12.27 31.03 0.38 -3.82 16 16 C 0.24 2.66 8.02 -156.36 -1.25 1.40 16 17 C -0.04 -0.35 9.85 -38.65 -0.38 -0.73 16 18 C 0.09 0.84 5.39 -3.72 -0.02 0.82 16 19 C -0.15 -2.04 5.66 -26.61 -0.15 -2.19 16 20 C 0.19 2.92 2.19 -67.89 -0.15 2.77 16 21 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 22 N -0.74 -15.30 4.14 -53.39 -0.22 -15.52 16 23 C -0.25 -6.24 10.41 -15.06 -0.16 -6.40 16 24 H 0.09 2.45 8.06 -52.48 -0.42 2.03 16 25 C 0.01 0.22 5.50 -17.44 -0.10 0.13 16 26 N -0.93 -27.74 13.97 55.49 0.78 -26.96 16 27 Si 0.88 20.93 27.73 -169.99 -4.71 16.21 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 30 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 31 H 0.05 0.53 6.70 -51.93 -0.35 0.18 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 1.22 7.22 -51.93 -0.38 0.85 16 36 H 0.10 1.07 5.74 -51.92 -0.30 0.78 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.18 0.43 7.08 -52.49 -0.37 0.06 16 39 H 0.19 0.39 8.06 -52.48 -0.42 -0.03 16 40 H 0.18 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.56 4.53 -51.93 -0.24 0.33 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.36 7.56 5.38 -40.82 -0.22 7.34 16 46 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 371.94 15.07 5.61 5.61 Total: -1.00 -33.24 371.94 -6.37 -39.60 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.09 Total: 4.24 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -3.28 Total: -3.17 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 2.02 Total: -55.44 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: 0.09 Total: -7.04 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.71 Total: 16.21 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.24 -6.37 -39.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037903597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.599 kcal (2) G-P(sol) polarization free energy of solvation -33.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds