Wall clock time and date at job start Wed Apr 1 2020 02:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47364 * 2 1 4 4 H 1.09001 * 109.49494 * 304.93603 * 3 2 1 5 5 C 1.53192 * 109.49352 * 65.00277 * 3 2 1 6 6 N 1.46928 * 108.77087 * 174.62082 * 5 3 2 7 7 C 1.34786 * 120.62877 * 126.37299 * 6 5 3 8 8 O 1.21556 * 119.99775 * 353.66328 * 7 6 5 9 9 C 1.47823 * 119.99664 * 173.67068 * 7 6 5 10 10 C 1.41571 * 120.37314 * 325.15276 * 9 7 6 11 11 C 1.34817 * 120.11163 * 179.77527 * 10 9 7 12 12 N 1.36068 * 120.82678 * 0.49624 * 11 10 9 13 13 N 1.40252 * 133.72820 * 179.74549 * 12 11 10 14 14 N 1.28970 * 107.01678 * 180.02562 * 13 12 11 15 15 N 1.28541 * 110.84903 * 359.97438 * 14 13 12 16 16 C 1.32628 * 110.18409 * 0.02562 * 15 14 13 17 17 C 1.38455 * 120.36754 * 145.43453 * 9 7 6 18 18 C 1.46920 * 118.74350 * 306.38736 * 6 5 3 19 19 C 1.53197 * 108.88802 * 53.53839 * 18 6 5 20 20 C 1.53042 * 109.52557 * 184.85794 * 3 2 1 21 21 H 1.08994 * 109.45920 * 58.64531 * 20 3 2 22 22 N 1.46502 * 109.45646 * 298.67392 * 20 3 2 23 23 C 1.36943 * 119.99454 * 155.00352 * 22 20 3 24 24 H 1.07995 * 120.00451 * 359.97438 * 23 22 20 25 25 C 1.38816 * 119.99550 * 179.97438 * 23 22 20 26 26 N 1.31618 * 120.00047 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 119.99736 * 179.97438 * 25 23 22 28 28 H 1.48500 * 109.46935 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.46820 * 119.99983 * 27 25 23 30 30 H 1.48500 * 109.47175 * 240.00002 * 27 25 23 31 31 H 1.08996 * 109.47566 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47103 * 299.99720 * 1 2 3 33 33 H 1.09002 * 109.47743 * 59.99736 * 1 2 3 34 34 H 1.09007 * 109.47103 * 240.00280 * 2 1 3 35 35 H 1.09002 * 109.47743 * 120.00264 * 2 1 3 36 36 H 1.08995 * 109.59044 * 54.83451 * 5 3 2 37 37 H 1.09005 * 109.58861 * 294.40435 * 5 3 2 38 38 H 1.07996 * 119.94638 * 0.02562 * 10 9 7 39 39 H 1.07999 * 119.59050 * 180.27746 * 11 10 9 40 40 H 1.07998 * 120.52360 * 359.95161 * 17 9 7 41 41 H 1.08998 * 109.59374 * 173.39556 * 18 6 5 42 42 H 1.09001 * 109.58801 * 293.68594 * 18 6 5 43 43 H 1.08998 * 109.49554 * 65.39198 * 19 18 6 44 44 H 1.09006 * 109.49667 * 185.48904 * 19 18 6 45 45 H 0.96992 * 120.00435 * 335.00192 * 22 20 3 46 46 H 0.96994 * 119.99918 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 -0.8424 5 6 1.6351 2.1279 1.3088 6 7 2.2409 3.4659 1.3490 7 6 1.4804 4.5580 1.5627 8 8 0.2700 4.4560 1.6095 9 6 2.1183 5.8796 1.7399 10 6 3.3659 5.9896 2.3999 11 6 3.9451 7.1972 2.5547 12 7 3.3407 8.3249 2.0916 13 7 3.6836 9.6847 2.1070 14 7 2.7291 10.3214 1.5179 15 7 1.8115 9.5106 1.1269 16 6 2.1320 8.2654 1.4523 17 6 1.4995 7.0245 1.2674 18 6 3.6914 3.5909 1.1515 19 6 4.0765 2.8882 -0.1542 20 6 3.5655 1.4456 -0.1222 21 1 3.8573 0.9366 -1.0407 22 7 4.1486 0.7499 1.0277 23 6 5.3870 0.1747 0.9240 24 1 5.9337 0.2336 -0.0055 25 6 5.9397 -0.4841 2.0137 26 7 5.2733 -0.5564 3.1464 27 14 7.6287 -1.2694 1.8720 28 1 8.1636 -1.0495 0.5043 29 1 8.5451 -0.6552 2.8661 30 1 7.5203 -2.7272 2.1332 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 -0.3635 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.9913 1.5400 2.1547 37 1 0.5496 2.2168 1.3542 38 1 3.8565 5.1043 2.7765 39 1 4.8991 7.2708 3.0555 40 1 0.5457 6.9647 0.7642 41 1 3.9629 4.6449 1.0930 42 1 4.2154 3.1243 1.9858 43 1 3.6259 3.4131 -0.9964 44 1 5.1612 2.8899 -0.2620 45 1 3.6575 0.6967 1.8625 46 1 5.6596 -1.0164 3.9079 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037903598.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:07 Heat of formation + Delta-G solvation = 135.582405 kcal Electronic energy + Delta-G solvation = -30640.840654 eV Core-core repulsion = 26569.362966 eV Total energy + Delta-G solvation = -4071.477689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.69461 -40.77324 -38.86176 -37.90143 -34.89933 -34.28080 -33.87224 -32.48736 -31.86241 -30.88064 -29.63665 -28.75867 -26.39046 -25.27491 -24.43247 -23.88006 -23.61424 -23.13733 -21.07189 -20.52264 -19.07090 -18.62211 -18.24995 -17.44763 -17.18970 -16.58421 -16.30103 -15.62924 -15.46412 -14.99858 -14.79833 -14.43724 -14.14583 -13.90331 -13.74143 -13.45212 -13.42371 -13.34603 -13.06988 -12.84732 -12.70135 -12.46874 -12.26157 -11.97916 -11.81608 -11.56773 -11.37863 -11.23516 -11.15164 -10.94507 -10.92258 -10.49802 -10.44167 -10.40239 -10.25011 -9.99384 -9.91825 -9.69453 -9.08693 -8.99890 -8.53146 -7.11935 -5.92439 -3.21307 -0.24495 0.04233 1.34835 1.76215 2.22908 2.63422 2.94340 3.31922 3.37927 3.39156 3.40952 3.66069 3.93906 4.12711 4.45095 4.45918 4.57532 4.87706 4.91689 5.04211 5.10960 5.16540 5.21482 5.29692 5.32396 5.37505 5.45780 5.51269 5.57116 5.61982 5.65786 5.77071 5.86973 5.92892 5.95800 6.01191 6.16429 6.20477 6.29371 6.38957 6.43705 6.53768 6.60516 6.76226 6.84008 7.30712 7.57531 7.90536 8.02389 8.25970 9.38295 9.93099 10.28212 11.29706 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012163 B = 0.003227 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.549012 B = 8674.340370 C =10374.735163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.068 0.932 5 C 0.118 3.882 6 N -0.587 5.587 7 C 0.557 3.443 8 O -0.530 6.530 9 C -0.056 4.056 10 C -0.114 4.114 11 C 0.104 3.896 12 N -0.294 5.294 13 N -0.110 5.110 14 N -0.010 5.010 15 N -0.317 5.317 16 C 0.239 3.761 17 C -0.035 4.035 18 C 0.097 3.903 19 C -0.150 4.150 20 C 0.177 3.823 21 H 0.053 0.947 22 N -0.719 5.719 23 C -0.239 4.239 24 H 0.070 0.930 25 C -0.009 4.009 26 N -0.931 5.931 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.292 1.292 30 H -0.292 1.292 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.184 0.816 39 H 0.190 0.810 40 H 0.177 0.823 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.384 0.616 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.349 9.719 -3.163 11.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.086 0.914 5 C -0.004 4.004 6 N -0.318 5.318 7 C 0.343 3.657 8 O -0.407 6.407 9 C -0.068 4.068 10 C -0.137 4.137 11 C -0.023 4.023 12 N -0.074 5.074 13 N -0.093 5.093 14 N -0.003 5.003 15 N -0.177 5.177 16 C -0.015 4.015 17 C -0.059 4.059 18 C -0.025 4.025 19 C -0.191 4.191 20 C 0.067 3.933 21 H 0.071 0.929 22 N -0.361 5.361 23 C -0.370 4.370 24 H 0.088 0.912 25 C -0.206 4.206 26 N -0.579 5.579 27 Si 0.734 3.266 28 H -0.206 1.206 29 H -0.220 1.220 30 H -0.219 1.219 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.201 0.799 39 H 0.207 0.793 40 H 0.194 0.806 41 H 0.095 0.905 42 H 0.111 0.889 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.219 0.781 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.582 11.217 -3.265 12.947 hybrid contribution 1.150 -1.414 0.427 1.872 sum -4.431 9.803 -2.838 11.126 Atomic orbital electron populations 1.21859 0.96712 1.01170 1.01388 1.21418 0.94348 0.95538 1.03507 1.21758 0.97384 0.96326 0.96855 0.91361 1.21837 0.99036 0.80622 0.98882 1.48048 1.08888 1.06461 1.68358 1.17794 0.86557 0.83155 0.78215 1.90824 1.13087 1.85505 1.51329 1.20395 0.94427 0.94727 0.97267 1.21616 0.94775 0.97747 0.99597 1.21646 1.00275 0.81562 0.98796 1.49034 1.15160 1.08467 1.34755 1.82813 1.20024 0.81088 1.25389 1.77874 0.95581 1.23028 1.03840 1.75247 1.21621 0.95900 1.24975 1.22727 0.86504 0.96428 0.95851 1.20684 1.00714 0.85301 0.99184 1.22272 0.78875 1.00421 1.00887 1.22550 1.02088 0.99362 0.95132 1.20240 0.89690 0.90571 0.92810 0.92913 1.42486 1.19021 1.64152 1.10472 1.19247 0.93436 1.27232 0.97096 0.91186 1.24693 0.98531 1.01312 0.96033 1.69642 1.37985 1.48059 1.02247 0.86192 0.84203 0.79016 0.77174 1.20628 1.21952 1.21936 0.93088 0.92778 0.93300 0.91913 0.90420 0.90062 0.89132 0.79910 0.79327 0.80589 0.90466 0.88868 0.93151 0.90377 0.78124 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.67 37.15 0.36 -1.47 16 2 C -0.11 -1.54 5.19 -26.73 -0.14 -1.68 16 3 C -0.10 -1.43 2.14 -90.50 -0.19 -1.62 16 4 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 5 C 0.12 1.63 5.04 -3.71 -0.02 1.61 16 6 N -0.59 -7.40 2.97 -173.89 -0.52 -7.91 16 7 C 0.56 7.01 7.40 -12.34 -0.09 6.92 16 8 O -0.53 -8.19 16.25 5.32 0.09 -8.11 16 9 C -0.06 -0.56 5.31 -104.63 -0.56 -1.12 16 10 C -0.11 -0.89 7.32 -39.52 -0.29 -1.18 16 11 C 0.10 0.79 11.19 -16.89 -0.19 0.60 16 12 N -0.29 -3.24 3.94 -12.42 -0.05 -3.29 16 13 N -0.11 -1.44 13.98 60.35 0.84 -0.60 16 14 N -0.01 -0.15 13.35 60.35 0.81 0.66 16 15 N -0.32 -4.40 12.27 31.04 0.38 -4.02 16 16 C 0.24 2.83 8.02 -156.35 -1.25 1.58 16 17 C -0.04 -0.36 9.72 -38.65 -0.38 -0.73 16 18 C 0.10 1.16 4.51 -3.71 -0.02 1.14 16 19 C -0.15 -2.04 5.78 -26.59 -0.15 -2.19 16 20 C 0.18 2.83 2.53 -67.87 -0.17 2.66 16 21 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 22 N -0.72 -14.49 3.72 -53.37 -0.20 -14.69 16 23 C -0.24 -5.67 9.92 -15.06 -0.15 -5.81 16 24 H 0.07 1.65 7.83 -52.49 -0.41 1.24 16 25 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 26 N -0.93 -24.99 13.06 55.49 0.72 -24.26 16 27 Si 0.90 20.40 29.55 -169.99 -5.02 15.38 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 30 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.64 6.70 -51.92 -0.35 0.29 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 35 H 0.08 1.28 7.70 -51.93 -0.40 0.88 16 36 H 0.08 1.26 6.64 -51.93 -0.34 0.91 16 37 H 0.09 1.27 5.71 -51.93 -0.30 0.97 16 38 H 0.18 1.20 6.06 -52.49 -0.32 0.89 16 39 H 0.19 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.18 1.63 8.01 -52.49 -0.42 1.21 16 41 H 0.08 0.71 4.47 -51.93 -0.23 0.48 16 42 H 0.09 1.30 7.64 -51.93 -0.40 0.90 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.38 8.30 5.94 -40.82 -0.24 8.05 16 46 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 369.67 15.07 5.57 5.57 Total: -1.00 -29.54 369.67 -6.63 -36.17 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.92 Total: 6.74 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.33 Total: -1.64 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 1.99 Total: -54.12 kcal Atomic # 8 Polarization: -8.19 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.54 -6.63 -36.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037903598.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.753 kcal (2) G-P(sol) polarization free energy of solvation -29.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds