Wall clock time and date at job start Wed Apr 1 2020 02:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47164 * 2 1 4 4 H 1.08998 * 109.49555 * 54.94056 * 3 2 1 5 5 C 1.53187 * 109.52480 * 294.85189 * 3 2 1 6 6 N 1.46923 * 108.77462 * 185.39619 * 5 3 2 7 7 C 1.34775 * 120.63231 * 233.59061 * 6 5 3 8 8 O 1.21559 * 120.00087 * 356.17963 * 7 6 5 9 9 C 1.47826 * 120.00445 * 176.17721 * 7 6 5 10 10 C 1.41575 * 120.37190 * 50.47590 * 9 7 6 11 11 C 1.34817 * 120.11490 * 179.77927 * 10 9 7 12 12 N 1.36061 * 120.82436 * 0.49347 * 11 10 9 13 13 N 1.40259 * 133.73137 * 179.76734 * 12 11 10 14 14 N 1.28968 * 107.02018 * 180.02562 * 13 12 11 15 15 N 1.28537 * 110.84615 * 359.97438 * 14 13 12 16 16 C 1.32625 * 110.18325 * 0.02562 * 15 14 13 17 17 C 1.38461 * 120.37321 * 230.76738 * 9 7 6 18 18 C 1.46920 * 118.73895 * 53.61404 * 6 5 3 19 19 C 1.53167 * 108.76812 * 306.38704 * 18 6 5 20 20 C 1.53040 * 109.32309 * 54.64464 * 19 18 6 21 21 H 1.09003 * 109.45826 * 178.61477 * 20 19 18 22 22 N 1.46504 * 109.46105 * 58.64348 * 20 19 18 23 23 C 1.36932 * 120.00017 * 84.97103 * 22 20 19 24 24 H 1.08002 * 120.00517 * 359.97438 * 23 22 20 25 25 C 1.38813 * 119.99924 * 179.97438 * 23 22 20 26 26 N 1.31622 * 120.00190 * 0.02562 * 25 23 22 27 27 Si 1.86806 * 120.00202 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.47001 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.46967 * 240.00345 * 27 25 23 30 30 H 1.48501 * 109.47023 * 120.00106 * 27 25 23 31 31 H 1.09005 * 109.47397 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46768 * 299.99637 * 1 2 3 33 33 H 1.08996 * 109.46982 * 59.99873 * 1 2 3 34 34 H 1.09002 * 109.47271 * 240.00204 * 2 1 3 35 35 H 1.09002 * 109.47514 * 120.00559 * 2 1 3 36 36 H 1.08994 * 109.59056 * 305.18777 * 5 3 2 37 37 H 1.09005 * 109.58010 * 65.61498 * 5 3 2 38 38 H 1.08001 * 119.94201 * 0.03639 * 10 9 7 39 39 H 1.07999 * 119.59402 * 180.26700 * 11 10 9 40 40 H 1.08001 * 120.52085 * 359.94924 * 17 9 7 41 41 H 1.08997 * 109.59064 * 66.17596 * 18 6 5 42 42 H 1.09006 * 109.58675 * 186.46051 * 18 6 5 43 43 H 1.08992 * 109.50496 * 294.68273 * 19 18 6 44 44 H 1.09001 * 109.47900 * 174.59071 * 19 18 6 45 45 H 0.96996 * 119.99790 * 264.96699 * 22 20 19 46 46 H 0.96996 * 119.99352 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9822 0.8411 5 6 1.6386 2.1275 -1.3101 6 7 2.2451 3.4651 -1.3495 7 6 1.4857 4.5573 -1.5662 8 8 0.2991 4.4359 -1.8004 9 6 2.0958 5.9030 -1.5192 10 6 3.2695 6.1831 -2.2597 11 6 3.8190 7.4134 -2.2165 12 7 3.2653 8.3981 -1.4582 13 7 3.6002 9.7380 -1.2140 14 7 2.7143 10.2066 -0.4021 15 7 1.8473 9.3064 -0.1020 16 6 2.1342 8.1698 -0.7224 17 6 1.5291 6.9019 -0.7458 18 6 3.6951 3.5895 -1.1486 19 6 4.0734 2.8882 0.1595 20 6 3.5652 1.4450 0.1257 21 1 3.8546 0.9365 1.0454 22 7 4.1507 0.7481 -1.0223 23 6 5.3883 0.1719 -0.9151 24 1 5.9330 0.2315 0.0157 25 6 5.9428 -0.4888 -2.0026 26 7 5.2793 -0.5610 -3.1371 27 14 7.6314 -1.2743 -1.8566 28 1 8.1634 -1.0533 -0.4880 29 1 8.5497 -0.6619 -2.8501 30 1 7.5231 -2.7325 -2.1157 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.9965 1.5390 -2.1548 37 1 0.5532 2.2168 -1.3580 38 1 3.7231 5.4109 -2.8634 39 1 4.7120 7.6190 -2.7881 40 1 0.6360 6.7096 -0.1698 41 1 4.2209 3.1201 -1.9801 42 1 3.9672 4.6435 -1.0925 43 1 3.6190 3.4143 0.9990 44 1 5.1575 2.8896 0.2724 45 1 3.6617 0.6949 -1.8583 46 1 4.4027 -0.1528 -3.2129 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037903600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:10 Heat of formation + Delta-G solvation = 131.858005 kcal Electronic energy + Delta-G solvation = -30704.328197 eV Core-core repulsion = 26632.689006 eV Total energy + Delta-G solvation = -4071.639191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.73513 -40.81248 -38.95638 -37.98407 -34.94962 -34.37317 -34.07132 -32.55081 -31.98150 -30.94184 -29.59429 -28.63940 -26.39998 -25.27991 -24.41772 -23.97984 -23.56433 -23.19105 -21.18335 -20.61376 -19.16500 -18.70651 -18.26467 -17.48584 -17.24509 -16.81064 -16.48124 -15.73772 -15.41440 -15.25831 -14.95233 -14.56454 -14.13168 -13.82070 -13.78281 -13.56579 -13.47502 -13.44237 -13.20881 -12.91654 -12.86178 -12.51799 -12.35606 -12.06828 -11.88144 -11.73284 -11.41711 -11.35986 -11.18894 -10.84421 -10.72566 -10.54409 -10.50355 -10.35830 -10.17092 -10.05379 -10.03511 -9.29298 -9.10020 -9.03587 -8.62683 -7.18321 -6.22850 -3.24545 -0.25178 -0.00483 1.30217 1.73031 2.16795 2.50703 2.81260 3.32649 3.43221 3.48056 3.57465 3.61095 3.88735 4.06209 4.39643 4.52703 4.54435 4.82450 4.83241 4.98046 5.03546 5.06798 5.15941 5.21214 5.24660 5.30821 5.44631 5.46077 5.49517 5.51051 5.55236 5.66891 5.74807 5.86326 5.88299 5.92687 6.06899 6.11871 6.21445 6.28971 6.34844 6.42770 6.52612 6.66814 6.72828 7.21666 7.69399 7.82182 7.98712 8.61690 9.06822 9.93259 10.08018 11.24608 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.003219 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.999757 B = 8695.586086 C =10239.903965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.106 4.106 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.587 5.587 7 C 0.557 3.443 8 O -0.528 6.528 9 C -0.051 4.051 10 C -0.113 4.113 11 C 0.108 3.892 12 N -0.296 5.296 13 N -0.109 5.109 14 N -0.009 5.009 15 N -0.317 5.317 16 C 0.242 3.758 17 C -0.042 4.042 18 C 0.102 3.898 19 C -0.150 4.150 20 C 0.184 3.816 21 H 0.054 0.946 22 N -0.730 5.730 23 C -0.330 4.330 24 H 0.065 0.935 25 C -0.041 4.041 26 N -0.943 5.943 27 Si 1.081 2.919 28 H -0.295 1.295 29 H -0.294 1.294 30 H -0.294 1.294 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.179 0.821 39 H 0.190 0.810 40 H 0.175 0.825 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.366 0.634 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.454 10.424 3.593 12.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.147 4.147 3 C -0.126 4.126 4 H 0.088 0.912 5 C -0.003 4.003 6 N -0.318 5.318 7 C 0.343 3.657 8 O -0.405 6.405 9 C -0.063 4.063 10 C -0.136 4.136 11 C -0.018 4.018 12 N -0.076 5.076 13 N -0.092 5.092 14 N -0.002 5.002 15 N -0.178 5.178 16 C -0.012 4.012 17 C -0.065 4.065 18 C -0.019 4.019 19 C -0.191 4.191 20 C 0.073 3.927 21 H 0.072 0.928 22 N -0.373 5.373 23 C -0.461 4.461 24 H 0.083 0.917 25 C -0.239 4.239 26 N -0.588 5.588 27 Si 0.913 3.087 28 H -0.222 1.222 29 H -0.221 1.221 30 H -0.221 1.221 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.196 0.804 39 H 0.207 0.793 40 H 0.192 0.808 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.201 0.799 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.535 11.066 3.270 12.398 hybrid contribution -0.977 0.005 0.262 1.012 sum -5.513 11.071 3.532 12.862 Atomic orbital electron populations 1.21862 0.96553 1.01305 1.01439 1.21405 0.94478 0.95445 1.03378 1.21798 0.97524 0.96371 0.96861 0.91186 1.21799 0.99093 0.80754 0.98616 1.48092 1.08940 1.06396 1.68360 1.17825 0.86202 0.83348 0.78338 1.90844 1.14728 1.86063 1.48860 1.20354 0.94620 0.95249 0.96045 1.21369 0.95216 0.96182 1.00862 1.21616 1.00242 0.85166 0.94822 1.49019 1.18653 1.10745 1.29160 1.82819 1.21047 0.85255 1.20114 1.77875 0.96911 1.20944 1.04465 1.75252 1.21850 0.96090 1.24564 1.22701 0.88160 0.97120 0.93227 1.20601 1.00475 0.86068 0.99394 1.22089 0.78666 1.00473 1.00711 1.22523 1.02213 0.99251 0.95154 1.20157 0.89434 0.90502 0.92574 0.92809 1.42482 1.19483 1.65218 1.10144 1.20065 0.94585 1.31758 0.99721 0.91723 1.25679 1.05539 0.99999 0.92720 1.70857 1.14433 1.47618 1.25890 0.83194 0.74717 0.76370 0.74449 1.22170 1.22091 1.22075 0.92971 0.93185 0.92770 0.90825 0.91779 0.90594 0.89011 0.80409 0.79300 0.80785 0.89238 0.90666 0.93055 0.90399 0.79905 0.93457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 37.16 0.36 -1.46 16 2 C -0.11 -1.52 5.19 -26.73 -0.14 -1.66 16 3 C -0.11 -1.46 2.13 -90.50 -0.19 -1.65 16 4 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 5 C 0.12 1.64 5.02 -3.71 -0.02 1.62 16 6 N -0.59 -7.40 2.97 -173.91 -0.52 -7.91 16 7 C 0.56 6.95 7.25 -12.34 -0.09 6.86 16 8 O -0.53 -8.16 16.47 5.31 0.09 -8.07 16 9 C -0.05 -0.50 5.02 -104.62 -0.53 -1.03 16 10 C -0.11 -0.85 7.32 -39.52 -0.29 -1.14 16 11 C 0.11 0.79 11.19 -16.89 -0.19 0.60 16 12 N -0.30 -3.20 3.94 -12.43 -0.05 -3.25 16 13 N -0.11 -1.41 13.98 60.35 0.84 -0.57 16 14 N -0.01 -0.13 13.35 60.35 0.81 0.68 16 15 N -0.32 -4.36 12.27 31.03 0.38 -3.98 16 16 C 0.24 2.83 8.02 -156.36 -1.25 1.57 16 17 C -0.04 -0.42 9.85 -38.64 -0.38 -0.80 16 18 C 0.10 1.25 5.14 -3.73 -0.02 1.24 16 19 C -0.15 -2.10 5.78 -26.62 -0.15 -2.25 16 20 C 0.18 2.99 2.53 -67.89 -0.17 2.82 16 21 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 22 N -0.73 -14.91 3.72 -53.38 -0.20 -15.11 16 23 C -0.33 -8.04 9.93 -15.06 -0.15 -8.19 16 24 H 0.06 1.59 7.83 -52.49 -0.41 1.18 16 25 C -0.04 -1.08 5.50 -17.43 -0.10 -1.18 16 26 N -0.94 -26.36 13.70 55.49 0.76 -25.60 16 27 Si 1.08 23.95 29.92 -169.99 -5.09 18.86 16 28 H -0.30 -6.17 7.11 56.52 0.40 -5.77 16 29 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 30 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 34 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.08 1.16 6.64 -51.93 -0.34 0.81 16 37 H 0.09 1.27 5.75 -51.93 -0.30 0.97 16 38 H 0.18 1.05 7.09 -52.49 -0.37 0.67 16 39 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 41 H 0.09 1.29 7.74 -51.93 -0.40 0.89 16 42 H 0.08 0.72 4.52 -51.93 -0.23 0.48 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.37 7.81 4.78 -40.82 -0.19 7.62 16 46 H 0.25 6.93 6.77 -40.82 -0.28 6.66 16 LS Contribution 369.76 15.07 5.57 5.57 Total: -1.00 -30.92 369.76 -6.59 -37.51 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.88 Total: 6.51 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: -3.31 Total: -4.63 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 2.03 Total: -55.74 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 23.95 SS G_CDS: -5.09 Total: 18.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.92 -6.59 -37.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037903600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.363 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds