Wall clock time and date at job start Wed Apr 1 2020 02:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47288 * 2 1 4 4 H 1.09003 * 109.49414 * 55.06409 * 3 2 1 5 5 C 1.53195 * 109.49584 * 295.00063 * 3 2 1 6 6 N 1.46919 * 108.77356 * 185.41069 * 5 3 2 7 7 C 1.34779 * 120.63468 * 233.58467 * 6 5 3 8 8 O 1.21526 * 119.99542 * 7.42842 * 7 6 5 9 9 C 1.48121 * 120.00260 * 187.70598 * 7 6 5 10 10 N 1.33470 * 125.32789 * 7.68565 * 9 7 6 11 11 C 1.32494 * 109.75752 * 180.02562 * 10 9 7 12 12 N 1.33988 * 132.34057 * 179.97438 * 11 10 9 13 13 C 1.31261 * 120.87734 * 179.97438 * 12 11 10 14 14 C 1.40168 * 120.35834 * 0.02562 * 13 12 11 15 15 C 1.35680 * 119.27332 * 359.97438 * 14 13 12 16 16 N 1.36172 * 119.02919 * 359.97438 * 15 14 13 17 17 N 1.31995 * 125.32332 * 187.37551 * 9 7 6 18 18 C 1.46932 * 118.73904 * 53.86602 * 6 5 3 19 19 C 1.53625 * 108.53750 * 306.08899 * 18 6 5 20 20 C 1.53037 * 109.49645 * 175.16395 * 3 2 1 21 21 H 1.09000 * 109.45909 * 301.33323 * 20 3 2 22 22 N 1.46497 * 109.46483 * 61.29817 * 20 3 2 23 23 C 1.36930 * 119.99966 * 204.99958 * 22 20 3 24 24 H 1.08007 * 120.00222 * 359.97438 * 23 22 20 25 25 C 1.38819 * 119.99969 * 179.97438 * 23 22 20 26 26 N 1.31612 * 119.99781 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 119.99769 * 179.97438 * 25 23 22 28 28 H 1.48492 * 109.47698 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47076 * 120.00808 * 27 25 23 30 30 H 1.48504 * 109.46768 * 240.00302 * 27 25 23 31 31 H 1.09003 * 109.46976 * 299.99539 * 1 2 3 32 32 H 1.08992 * 109.47565 * 60.00093 * 1 2 3 33 33 H 1.09005 * 109.46883 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46924 * 239.99743 * 2 1 3 35 35 H 1.09004 * 109.47184 * 120.00020 * 2 1 3 36 36 H 1.08997 * 109.58570 * 65.62530 * 5 3 2 37 37 H 1.08998 * 109.70416 * 305.27038 * 5 3 2 38 38 H 1.07997 * 119.82144 * 180.02562 * 13 12 11 39 39 H 1.08006 * 120.36729 * 179.97438 * 14 13 12 40 40 H 1.08002 * 120.49131 * 180.02562 * 15 14 13 41 41 H 1.08991 * 109.58673 * 65.91848 * 18 6 5 42 42 H 1.09004 * 109.58718 * 186.35171 * 18 6 5 43 43 H 1.09000 * 109.63577 * 294.86365 * 19 18 6 44 44 H 1.09006 * 109.43216 * 174.72808 * 19 18 6 45 45 H 0.96996 * 119.99605 * 24.98983 * 22 20 3 46 46 H 0.97004 * 120.00218 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6351 2.1279 -1.3088 6 7 2.2415 3.4655 -1.3493 7 6 1.4816 4.5579 -1.5638 8 8 0.2707 4.4597 -1.5912 9 6 2.1227 5.8768 -1.7720 10 7 3.4337 6.0841 -1.9134 11 6 3.6671 7.3774 -2.0816 12 7 4.7970 8.0745 -2.2620 13 6 4.7679 9.3786 -2.4085 14 6 3.5477 10.0678 -2.3780 15 6 2.3972 9.3721 -2.1959 16 7 2.4590 8.0198 -2.0479 17 7 1.4864 7.0304 -1.8527 18 6 3.6930 3.5892 -1.1579 19 6 4.0741 2.8879 0.1547 20 6 3.5656 1.4448 0.1216 21 1 3.8574 0.9358 1.0402 22 7 4.1480 0.7484 -1.0281 23 6 5.3861 0.1726 -0.9246 24 1 5.9334 0.2322 0.0046 25 6 5.9378 -0.4877 -2.0139 26 7 5.2710 -0.5599 -3.1464 27 14 7.6270 -1.2726 -1.8728 28 1 8.1629 -1.0517 -0.5056 29 1 7.5185 -2.7307 -2.1319 30 1 8.5423 -0.6596 -2.8687 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 0.5497 2.2173 -1.3538 37 1 1.9888 1.5405 -2.1561 38 1 5.6890 9.9235 -2.5533 39 1 3.5236 11.1409 -2.4981 40 1 1.4461 9.8831 -2.1696 41 1 4.2130 3.1177 -1.9916 42 1 3.9659 4.6432 -1.1033 43 1 3.6220 3.4138 0.9956 44 1 5.1585 2.8891 0.2650 45 1 3.6566 0.6951 -1.8627 46 1 5.6566 -1.0210 -3.9077 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037940604.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:26 Heat of formation + Delta-G solvation = 135.690209 kcal Electronic energy + Delta-G solvation = -30636.361291 eV Core-core repulsion = 26564.888277 eV Total energy + Delta-G solvation = -4071.473014 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.25390 -40.18005 -38.93916 -37.69166 -35.07566 -34.34578 -33.67867 -31.82394 -31.60572 -31.04821 -29.31046 -28.61666 -26.40703 -25.08952 -24.34538 -23.61423 -23.47434 -22.87533 -20.73014 -19.99791 -18.89945 -18.55469 -18.08742 -17.26542 -17.06225 -16.97759 -16.27359 -15.74197 -15.13172 -14.95912 -14.56718 -14.41265 -13.96335 -13.72000 -13.65304 -13.43282 -13.22001 -13.13643 -12.97728 -12.82991 -12.51202 -12.41528 -12.11352 -11.69803 -11.36891 -11.06675 -10.98308 -10.79979 -10.69582 -10.45061 -10.35460 -10.26346 -10.21556 -10.11178 -10.07883 -9.72006 -9.59573 -9.46955 -9.17275 -8.80328 -8.23046 -6.89039 -5.71763 -2.99452 -0.05336 0.23432 1.39218 1.60721 2.68334 2.87430 3.04824 3.32277 3.46866 3.52948 3.54769 3.74908 3.82430 4.19892 4.38281 4.63818 4.64499 4.82134 5.18161 5.30328 5.32349 5.42231 5.49799 5.59818 5.64321 5.71304 5.73650 5.74524 5.85400 5.87695 5.94665 6.05276 6.15480 6.23907 6.36699 6.43229 6.50216 6.55834 6.67498 6.71558 6.86682 6.87378 7.00555 7.05852 7.09233 7.39254 7.64264 7.76423 8.17197 8.46671 9.58433 10.15491 10.50684 11.50870 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.003427 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.557773 B = 8168.049009 C =10147.111405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.102 4.102 4 H 0.067 0.933 5 C 0.118 3.882 6 N -0.569 5.569 7 C 0.602 3.398 8 O -0.523 6.523 9 C 0.253 3.747 10 N -0.484 5.484 11 C 0.437 3.563 12 N -0.445 5.445 13 C 0.207 3.793 14 C -0.221 4.221 15 C 0.172 3.828 16 N -0.329 5.329 17 N -0.271 5.271 18 C 0.085 3.915 19 C -0.148 4.148 20 C 0.177 3.823 21 H 0.051 0.949 22 N -0.718 5.718 23 C -0.233 4.233 24 H 0.070 0.930 25 C -0.012 4.012 26 N -0.932 5.932 27 Si 0.903 3.097 28 H -0.281 1.281 29 H -0.294 1.294 30 H -0.293 1.293 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.193 0.807 39 H 0.176 0.824 40 H 0.185 0.815 41 H 0.086 0.914 42 H 0.124 0.876 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.383 0.617 46 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.655 22.459 3.336 23.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.086 0.914 5 C -0.003 4.003 6 N -0.300 5.300 7 C 0.383 3.617 8 O -0.397 6.397 9 C -0.030 4.030 10 N -0.218 5.218 11 C 0.078 3.922 12 N -0.159 5.159 13 C 0.020 3.980 14 C -0.246 4.246 15 C 0.035 3.965 16 N -0.110 5.110 17 N -0.105 5.105 18 C -0.037 4.037 19 C -0.189 4.189 20 C 0.067 3.933 21 H 0.069 0.931 22 N -0.360 5.360 23 C -0.365 4.365 24 H 0.088 0.912 25 C -0.208 4.208 26 N -0.581 5.581 27 Si 0.735 3.265 28 H -0.207 1.207 29 H -0.221 1.221 30 H -0.220 1.220 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.107 0.893 37 H 0.100 0.900 38 H 0.210 0.790 39 H 0.194 0.806 40 H 0.202 0.798 41 H 0.104 0.896 42 H 0.141 0.859 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.219 0.781 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.036 21.243 3.474 22.356 hybrid contribution 0.437 0.356 -0.355 0.666 sum -5.599 21.599 3.118 22.530 Atomic orbital electron populations 1.21862 0.96826 1.01037 1.01385 1.21418 0.94239 0.95616 1.03486 1.21753 0.97629 0.96143 0.96709 0.91415 1.21866 0.98822 0.80626 0.99021 1.47980 1.09837 1.05459 1.66746 1.16396 0.85619 0.80698 0.78992 1.90807 1.12570 1.84354 1.52009 1.24367 0.87464 0.95115 0.96101 1.71073 1.14251 1.09497 1.26977 1.23091 0.82631 0.89947 0.96573 1.68133 1.23228 1.08566 1.15993 1.23680 0.99217 0.88360 0.86746 1.22015 0.91526 1.03271 1.07756 1.22235 1.02360 0.79521 0.92412 1.49109 1.09227 1.07628 1.45039 1.78940 1.07818 0.95136 1.28597 1.22790 0.77051 1.04538 0.99310 1.22603 1.01818 0.98809 0.95658 1.20254 0.89568 0.90926 0.92577 0.93139 1.42461 1.19032 1.63964 1.10568 1.19258 0.93555 1.26572 0.97089 0.91226 1.24687 0.98476 1.01628 0.96035 1.69656 1.37966 1.48217 1.02228 0.86174 0.84450 0.78800 0.77102 1.20668 1.22101 1.22022 0.93351 0.92770 0.93153 0.90392 0.91920 0.89332 0.89995 0.79042 0.80629 0.79821 0.89582 0.85940 0.93700 0.90662 0.78148 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.67 37.16 0.36 -1.78 16 2 C -0.11 -1.79 5.19 -26.73 -0.14 -1.93 16 3 C -0.10 -1.74 2.14 -90.50 -0.19 -1.93 16 4 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 5 C 0.12 2.10 5.03 -3.71 -0.02 2.08 16 6 N -0.57 -10.40 2.97 -173.51 -0.51 -10.91 16 7 C 0.60 11.27 7.70 -12.20 -0.09 11.17 16 8 O -0.52 -10.65 16.50 5.34 0.09 -10.56 16 9 C 0.25 4.42 7.62 -156.78 -1.20 3.23 16 10 N -0.48 -8.25 7.65 -12.23 -0.09 -8.34 16 11 C 0.44 6.23 8.98 -323.05 -2.90 3.33 16 12 N -0.45 -5.09 10.48 -13.79 -0.14 -5.23 16 13 C 0.21 1.12 11.27 -17.07 -0.19 0.92 16 14 C -0.22 -0.71 10.06 -39.77 -0.40 -1.11 16 15 C 0.17 1.08 11.32 -16.54 -0.19 0.89 16 16 N -0.33 -4.06 3.91 -13.80 -0.05 -4.11 16 17 N -0.27 -4.33 12.78 32.02 0.41 -3.92 16 18 C 0.08 1.58 5.83 -3.48 -0.02 1.56 16 19 C -0.15 -2.71 5.79 -26.38 -0.15 -2.86 16 20 C 0.18 3.45 2.53 -67.89 -0.17 3.28 16 21 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 22 N -0.72 -16.98 3.71 -53.38 -0.20 -17.18 16 23 C -0.23 -6.24 9.93 -15.06 -0.15 -6.38 16 24 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 26 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 27 Si 0.90 22.28 29.55 -169.99 -5.02 17.26 16 28 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.09 1.53 5.72 -51.93 -0.30 1.23 16 37 H 0.08 1.58 6.65 -51.93 -0.35 1.24 16 38 H 0.19 0.18 8.06 -52.49 -0.42 -0.25 16 39 H 0.18 -0.23 8.06 -52.48 -0.42 -0.66 16 40 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.09 1.86 7.73 -51.93 -0.40 1.46 16 42 H 0.12 2.25 4.15 -61.65 -0.26 2.00 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 45 H 0.38 9.70 5.95 -40.82 -0.24 9.46 16 46 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -35.55 372.35 -10.81 -46.36 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -6.06 Total: 7.89 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: -5.55 Total: 10.02 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: 0.13 Total: -76.59 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.09 Total: -10.56 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.55 -10.81 -46.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037940604.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.051 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds