Wall clock time and date at job start Wed Apr 1 2020 02:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46799 * 2 1 4 4 H 1.08998 * 109.52831 * 305.08260 * 3 2 1 5 5 C 1.53194 * 109.49668 * 65.16650 * 3 2 1 6 6 N 1.46921 * 108.77524 * 174.58795 * 5 3 2 7 7 C 1.34767 * 120.63581 * 126.41516 * 6 5 3 8 8 O 1.21532 * 119.99930 * 352.55297 * 7 6 5 9 9 C 1.48122 * 120.00768 * 172.55994 * 7 6 5 10 10 N 1.33472 * 125.32033 * 351.98818 * 9 7 6 11 11 C 1.32499 * 109.75630 * 180.02562 * 10 9 7 12 12 N 1.33993 * 132.34677 * 180.02562 * 11 10 9 13 13 C 1.31260 * 120.87944 * 180.02562 * 12 11 10 14 14 C 1.40173 * 120.35648 * 359.96544 * 13 12 11 15 15 C 1.35675 * 119.27162 * 0.02562 * 14 13 12 16 16 N 1.36164 * 119.03163 * 0.02562 * 15 14 13 17 17 N 1.31987 * 125.32958 * 171.68897 * 9 7 6 18 18 C 1.46930 * 118.73415 * 306.38283 * 6 5 3 19 19 C 1.53188 * 108.77269 * 53.61832 * 18 6 5 20 20 C 1.53040 * 109.31348 * 305.35680 * 19 18 6 21 21 H 1.08998 * 109.46074 * 301.36628 * 20 19 18 22 22 N 1.46500 * 109.46169 * 181.38897 * 20 19 18 23 23 C 1.36934 * 120.00174 * 85.00213 * 22 20 19 24 24 H 1.08008 * 119.99862 * 0.02562 * 23 22 20 25 25 C 1.38807 * 120.00239 * 179.97438 * 23 22 20 26 26 N 1.31620 * 119.99888 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00248 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46784 * 0.02562 * 27 25 23 29 29 H 1.48494 * 109.47285 * 240.00164 * 27 25 23 30 30 H 1.48503 * 109.46991 * 119.99858 * 27 25 23 31 31 H 1.09004 * 109.47044 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47169 * 299.99565 * 1 2 3 33 33 H 1.09000 * 109.47527 * 59.99981 * 1 2 3 34 34 H 1.09002 * 109.46870 * 240.00605 * 2 1 3 35 35 H 1.08992 * 109.47513 * 120.00373 * 2 1 3 36 36 H 1.08998 * 109.58261 * 54.79556 * 5 3 2 37 37 H 1.09000 * 109.58037 * 294.37137 * 5 3 2 38 38 H 1.07993 * 119.82138 * 179.97438 * 13 12 11 39 39 H 1.08005 * 120.35866 * 180.02562 * 14 13 12 40 40 H 1.08004 * 120.48515 * 180.02562 * 15 14 13 41 41 H 1.08995 * 109.59145 * 293.82196 * 18 6 5 42 42 H 1.09009 * 109.58344 * 173.39906 * 18 6 5 43 43 H 1.09007 * 109.49609 * 185.41245 * 19 18 6 44 44 H 1.09004 * 109.53045 * 65.33001 * 19 18 6 45 45 H 0.97004 * 119.99865 * 265.00145 * 22 20 19 46 46 H 0.96998 * 120.00145 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6047 1.9829 -0.8406 5 6 1.6385 2.1268 1.3106 6 7 2.2449 3.4644 1.3508 7 6 1.4857 4.5564 1.5683 8 8 0.2747 4.4583 1.5987 9 6 2.1269 5.8762 1.7703 10 7 3.4381 6.0840 1.9089 11 6 3.6717 7.3779 2.0726 12 7 4.8018 8.0758 2.2491 13 6 4.7727 9.3804 2.3914 14 6 3.5523 10.0693 2.3604 15 6 2.4017 9.3728 2.1822 16 7 2.4635 8.0202 2.0384 17 7 1.4918 7.0314 1.8358 18 6 3.6951 3.5888 1.1500 19 6 4.0735 2.8883 -0.1588 20 6 3.5652 1.4452 -0.1258 21 1 4.0006 0.9262 0.7282 22 7 3.9541 0.7622 -1.3621 23 6 5.1917 0.1854 -1.4655 24 1 5.8809 0.2335 -0.6353 25 6 5.5600 -0.4622 -2.6367 26 7 4.7199 -0.5212 -3.6482 27 14 7.2486 -1.2485 -2.7780 28 1 7.9975 -1.0435 -1.5121 29 1 7.9931 -0.6240 -3.9008 30 1 7.0972 -2.7036 -3.0329 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 1.8933 -0.5138 0.8899 36 1 1.9965 1.5376 2.1548 37 1 0.5532 2.2160 1.3586 38 1 5.6939 9.9258 2.5330 39 1 3.5283 11.1427 2.4771 40 1 1.4506 9.8838 2.1547 41 1 4.2208 3.1190 1.9812 42 1 3.9668 4.6429 1.0920 43 1 5.1577 2.8896 -0.2719 44 1 3.6195 3.4148 -0.9984 45 1 3.3349 0.7187 -2.1076 46 1 3.8433 -0.1126 -3.5750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037940606.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:32 Heat of formation + Delta-G solvation = 133.099256 kcal Electronic energy + Delta-G solvation = -30216.968296 eV Core-core repulsion = 26145.382930 eV Total energy + Delta-G solvation = -4071.585366 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.39160 -40.34042 -39.04713 -37.79352 -35.25512 -34.76432 -33.91368 -31.96576 -31.76287 -31.19056 -29.35066 -28.80054 -26.37698 -25.15386 -24.40184 -23.68893 -23.43541 -22.47978 -20.89370 -20.18339 -19.40365 -18.93480 -18.37193 -17.33417 -17.23273 -17.12229 -16.47293 -15.95662 -15.24800 -15.09952 -14.91669 -14.37409 -14.03507 -13.84746 -13.62708 -13.55364 -13.41011 -13.27857 -13.11535 -13.09640 -12.76879 -12.54741 -12.10241 -11.85357 -11.66494 -11.32572 -10.90063 -10.72493 -10.57783 -10.52302 -10.46899 -10.37336 -10.24590 -10.20528 -10.04628 -9.85954 -9.75227 -9.32432 -9.12253 -8.80996 -8.54322 -6.96834 -6.05163 -3.04637 -0.17327 0.11021 1.25801 1.44763 2.50908 2.73096 2.87854 3.14983 3.54695 3.59511 3.61178 3.70467 3.72190 4.01770 4.26531 4.52577 4.70006 4.71216 5.04664 5.15028 5.18454 5.29742 5.34964 5.45511 5.49027 5.58878 5.60471 5.61154 5.64906 5.71592 5.82203 5.88729 6.08551 6.10506 6.21147 6.33169 6.36434 6.40738 6.42802 6.56781 6.67267 6.81853 6.88831 6.91028 7.06836 7.20276 7.40082 7.87067 7.95555 8.80469 9.27616 10.14073 10.29781 11.43294 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.002925 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.858373 B = 9569.631355 C =11431.826383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.106 4.106 4 H 0.070 0.930 5 C 0.120 3.880 6 N -0.576 5.576 7 C 0.605 3.395 8 O -0.517 6.517 9 C 0.251 3.749 10 N -0.489 5.489 11 C 0.439 3.561 12 N -0.447 5.447 13 C 0.209 3.791 14 C -0.219 4.219 15 C 0.172 3.828 16 N -0.329 5.329 17 N -0.269 5.269 18 C 0.078 3.922 19 C -0.148 4.148 20 C 0.187 3.813 21 H 0.050 0.950 22 N -0.732 5.732 23 C -0.326 4.326 24 H 0.065 0.935 25 C -0.046 4.046 26 N -0.946 5.946 27 Si 1.083 2.917 28 H -0.295 1.295 29 H -0.294 1.294 30 H -0.294 1.294 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.194 0.806 39 H 0.178 0.822 40 H 0.186 0.814 41 H 0.069 0.931 42 H 0.130 0.870 43 H 0.078 0.922 44 H 0.054 0.946 45 H 0.366 0.634 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.034 22.747 15.192 27.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.126 4.126 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.308 5.308 7 C 0.387 3.613 8 O -0.390 6.390 9 C -0.033 4.033 10 N -0.224 5.224 11 C 0.080 3.920 12 N -0.161 5.161 13 C 0.023 3.977 14 C -0.244 4.244 15 C 0.036 3.964 16 N -0.109 5.109 17 N -0.102 5.102 18 C -0.044 4.044 19 C -0.189 4.189 20 C 0.077 3.923 21 H 0.068 0.932 22 N -0.374 5.374 23 C -0.457 4.457 24 H 0.083 0.917 25 C -0.244 4.244 26 N -0.592 5.592 27 Si 0.915 3.085 28 H -0.221 1.221 29 H -0.222 1.222 30 H -0.221 1.221 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.211 0.789 39 H 0.195 0.805 40 H 0.203 0.797 41 H 0.087 0.913 42 H 0.147 0.853 43 H 0.096 0.904 44 H 0.073 0.927 45 H 0.200 0.800 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.399 20.743 14.270 25.405 hybrid contribution -1.589 1.744 0.770 2.482 sum -4.988 22.487 15.040 27.509 Atomic orbital electron populations 1.21853 0.96651 1.01145 1.01421 1.21435 0.94468 0.95510 1.03430 1.21813 0.97932 0.96271 0.96573 0.91182 1.21910 0.99500 0.80452 0.98375 1.47968 1.09711 1.05671 1.67403 1.16385 0.85605 0.80683 0.78660 1.90828 1.12515 1.84305 1.51365 1.24291 0.87517 0.95064 0.96381 1.70971 1.14175 1.09745 1.27513 1.23042 0.82644 0.89925 0.96438 1.68134 1.23123 1.08619 1.16237 1.23702 0.99276 0.88326 0.86443 1.22040 0.91459 1.03348 1.07567 1.22259 1.02467 0.79411 0.92303 1.49072 1.09210 1.07697 1.44932 1.78952 1.07982 0.95063 1.28232 1.22824 0.77431 1.05682 0.98491 1.22642 1.02307 0.98644 0.95316 1.20169 0.90459 0.90775 0.90874 0.93185 1.42425 1.16536 1.65716 1.12692 1.20085 0.92459 1.31599 1.01551 0.91711 1.25708 1.05798 1.00406 0.92448 1.70811 1.08399 1.47839 1.32161 0.83172 0.74381 0.76184 0.74766 1.22129 1.22153 1.22144 0.93057 0.93064 0.92974 0.90145 0.92222 0.90816 0.88817 0.78934 0.80502 0.79705 0.91304 0.85301 0.90385 0.92738 0.80042 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.67 37.16 0.36 -1.80 16 2 C -0.11 -1.82 5.31 -26.73 -0.14 -1.96 16 3 C -0.11 -1.81 1.92 -90.49 -0.17 -1.99 16 4 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 5 C 0.12 1.84 5.34 -3.71 -0.02 1.82 16 6 N -0.58 -9.31 2.97 -173.78 -0.52 -9.83 16 7 C 0.61 10.36 7.70 -12.21 -0.09 10.26 16 8 O -0.52 -9.83 16.50 5.34 0.09 -9.74 16 9 C 0.25 4.02 7.62 -156.79 -1.19 2.83 16 10 N -0.49 -7.48 7.66 -12.23 -0.09 -7.58 16 11 C 0.44 5.65 8.99 -323.04 -2.90 2.75 16 12 N -0.45 -4.51 10.48 -13.79 -0.14 -4.65 16 13 C 0.21 0.90 11.27 -17.07 -0.19 0.71 16 14 C -0.22 -0.51 10.06 -39.77 -0.40 -0.91 16 15 C 0.17 0.93 11.32 -16.55 -0.19 0.74 16 16 N -0.33 -3.70 3.91 -13.80 -0.05 -3.75 16 17 N -0.27 -4.00 12.79 32.02 0.41 -3.59 16 18 C 0.08 1.26 6.06 -3.71 -0.02 1.23 16 19 C -0.15 -2.77 5.66 -26.61 -0.15 -2.92 16 20 C 0.19 3.73 2.19 -67.89 -0.15 3.58 16 21 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 22 N -0.73 -17.99 4.33 -53.38 -0.23 -18.22 16 23 C -0.33 -9.02 9.93 -15.06 -0.15 -9.17 16 24 H 0.06 1.78 7.83 -52.48 -0.41 1.37 16 25 C -0.05 -1.34 5.50 -17.43 -0.10 -1.43 16 26 N -0.95 -29.30 13.70 55.49 0.76 -28.54 16 27 Si 1.08 26.20 29.92 -169.99 -5.09 21.12 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 30 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.66 6.70 -51.93 -0.35 0.31 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.57 7.22 -51.93 -0.37 1.19 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.44 5.72 -51.93 -0.30 1.14 16 38 H 0.19 -0.02 8.06 -52.49 -0.42 -0.45 16 39 H 0.18 -0.38 8.06 -52.48 -0.42 -0.80 16 40 H 0.19 0.38 8.06 -52.48 -0.42 -0.04 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.13 2.11 4.16 -61.13 -0.25 1.85 16 43 H 0.08 1.56 8.14 -51.92 -0.42 1.13 16 44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.37 9.43 6.35 -40.82 -0.26 9.18 16 46 H 0.26 7.80 6.77 -40.82 -0.28 7.52 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -37.36 374.26 -10.83 -48.19 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -6.09 Total: 7.19 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -5.51 Total: 3.75 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: 0.13 Total: -76.16 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 14 Polarization: 26.20 SS G_CDS: -5.09 Total: 21.12 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.36 -10.83 -48.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037940606.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.293 kcal (2) G-P(sol) polarization free energy of solvation -37.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds