Wall clock time and date at job start Wed Apr 1 2020 02:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47293 * 2 1 4 4 H 1.08998 * 109.52861 * 54.91625 * 3 2 1 5 5 C 1.53195 * 109.49575 * 294.83926 * 3 2 1 6 6 N 1.46930 * 108.77621 * 185.41076 * 5 3 2 7 7 C 1.34772 * 120.63343 * 233.58894 * 6 5 3 8 8 O 1.21525 * 119.99720 * 354.75726 * 7 6 5 9 9 C 1.48124 * 120.00223 * 174.76659 * 7 6 5 10 10 N 1.33476 * 125.32198 * 352.65705 * 9 7 6 11 11 C 1.32499 * 109.75297 * 179.86087 * 10 9 7 12 12 N 1.33982 * 132.34288 * 180.02562 * 11 10 9 13 13 C 1.31262 * 120.88455 * 180.35706 * 12 11 10 14 14 C 1.40176 * 120.35332 * 359.97179 * 13 12 11 15 15 C 1.35681 * 119.26931 * 0.03853 * 14 13 12 16 16 N 1.36162 * 119.03123 * 359.97438 * 15 14 13 17 17 N 1.31983 * 125.32707 * 172.96668 * 9 7 6 18 18 C 1.46933 * 118.73555 * 53.60688 * 6 5 3 19 19 C 1.53191 * 108.76537 * 306.38611 * 18 6 5 20 20 C 1.53034 * 109.31557 * 54.65348 * 19 18 6 21 21 H 1.09003 * 109.46092 * 58.62884 * 20 19 18 22 22 N 1.46499 * 109.46364 * 178.59853 * 20 19 18 23 23 C 1.36935 * 120.00093 * 275.03164 * 22 20 19 24 24 H 1.08000 * 120.00374 * 359.97438 * 23 22 20 25 25 C 1.38817 * 120.00002 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99879 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00120 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46962 * 180.02562 * 27 25 23 29 29 H 1.48494 * 109.47218 * 300.00606 * 27 25 23 30 30 H 1.48508 * 109.46845 * 60.00639 * 27 25 23 31 31 H 1.09006 * 109.46883 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47190 * 300.00007 * 1 2 3 33 33 H 1.09001 * 109.47042 * 60.00248 * 1 2 3 34 34 H 1.08999 * 109.47190 * 239.99993 * 2 1 3 35 35 H 1.09001 * 109.46868 * 120.00278 * 2 1 3 36 36 H 1.09001 * 109.58852 * 305.19761 * 5 3 2 37 37 H 1.08998 * 109.58804 * 65.62588 * 5 3 2 38 38 H 1.07996 * 119.82538 * 180.02562 * 13 12 11 39 39 H 1.07991 * 120.36504 * 180.02562 * 14 13 12 40 40 H 1.08003 * 120.48256 * 179.97438 * 15 14 13 41 41 H 1.09006 * 109.58260 * 66.18070 * 18 6 5 42 42 H 1.08994 * 109.58531 * 186.46096 * 18 6 5 43 43 H 1.08998 * 109.50879 * 294.69591 * 19 18 6 44 44 H 1.08994 * 109.48425 * 174.60040 * 19 18 6 45 45 H 0.97001 * 119.99652 * 95.02563 * 22 20 19 46 46 H 0.96999 * 120.00116 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9828 0.8406 5 6 1.6386 2.1267 -1.3105 6 7 2.2451 3.4643 -1.3508 7 6 1.4858 4.5564 -1.5682 8 8 0.3050 4.4335 -1.8276 9 6 2.0906 5.9063 -1.4910 10 7 3.3326 6.1733 -1.0815 11 6 3.5521 7.4787 -1.1385 12 7 4.6219 8.2279 -0.8396 13 6 4.5904 9.5329 -0.9772 14 6 3.4307 10.1682 -1.4424 15 6 2.3412 9.4195 -1.7480 16 7 2.4041 8.0680 -1.5946 17 7 1.4838 7.0339 -1.8110 18 6 3.6953 3.5887 -1.1499 19 6 4.0734 2.8882 0.1589 20 6 3.5652 1.4450 0.1257 21 1 4.0008 0.9262 -0.7282 22 7 3.9542 0.7620 1.3620 23 6 5.1921 0.1858 1.4656 24 1 5.8816 0.2345 0.6357 25 6 5.5608 -0.4610 2.6372 26 7 4.7204 -0.5208 3.6484 27 14 7.2492 -1.2476 2.7782 28 1 7.3951 -1.8694 4.1189 29 1 7.3989 -2.2895 1.7309 30 1 8.2956 -0.2095 2.5970 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.9965 1.5376 -2.1549 37 1 0.5533 2.2160 -1.3586 38 1 5.4628 10.1201 -0.7316 39 1 3.4047 11.2418 -1.5562 40 1 1.4373 9.8887 -2.1076 41 1 4.2209 3.1189 -1.9812 42 1 3.9674 4.6427 -1.0945 43 1 3.6188 3.4147 0.9981 44 1 5.1574 2.8897 0.2721 45 1 3.3348 0.7180 2.1072 46 1 4.9779 -0.9730 4.4670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037940607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:35 Heat of formation + Delta-G solvation = 135.315117 kcal Electronic energy + Delta-G solvation = -30247.701366 eV Core-core repulsion = 26176.212087 eV Total energy + Delta-G solvation = -4071.489279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.36430 -40.28411 -38.99321 -37.71109 -35.21050 -34.61702 -33.70287 -31.91534 -31.63886 -31.17100 -29.37972 -28.85155 -26.40172 -25.16443 -24.47959 -23.65307 -23.43769 -22.34699 -20.74086 -20.12071 -19.32172 -18.88136 -18.36271 -17.30992 -17.10632 -16.98888 -16.38733 -15.87657 -15.13677 -15.04242 -14.89822 -14.19905 -14.11922 -13.72747 -13.68494 -13.54698 -13.30479 -13.16786 -13.04055 -12.85021 -12.60120 -12.43916 -12.05837 -11.83528 -11.57840 -11.22916 -10.89586 -10.82401 -10.63907 -10.53327 -10.40185 -10.34798 -10.21195 -10.17499 -10.11463 -9.79453 -9.53991 -9.50138 -9.31409 -8.76691 -8.47985 -6.87667 -5.70671 -2.98597 -0.14223 0.14297 1.28593 1.48035 2.54478 2.77412 2.92752 3.19796 3.47887 3.52450 3.53119 3.63441 3.74866 4.06479 4.29609 4.55369 4.63885 4.74001 5.12349 5.21692 5.25467 5.38499 5.39328 5.49375 5.56699 5.64767 5.67002 5.68414 5.69582 5.76809 5.89970 6.00758 6.18008 6.20324 6.33123 6.44301 6.47448 6.52518 6.56157 6.68945 6.80243 6.92550 6.98324 7.03290 7.19940 7.24891 7.47436 7.75463 8.01360 8.47787 9.59026 10.17220 10.52382 11.51921 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011851 B = 0.003037 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.102964 B = 9215.945011 C =11192.825388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.071 0.929 5 C 0.119 3.881 6 N -0.574 5.574 7 C 0.604 3.396 8 O -0.518 6.518 9 C 0.253 3.747 10 N -0.487 5.487 11 C 0.440 3.560 12 N -0.447 5.447 13 C 0.209 3.791 14 C -0.219 4.219 15 C 0.172 3.828 16 N -0.329 5.329 17 N -0.270 5.270 18 C 0.058 3.942 19 C -0.142 4.142 20 C 0.181 3.819 21 H 0.048 0.952 22 N -0.720 5.720 23 C -0.234 4.234 24 H 0.069 0.931 25 C -0.014 4.014 26 N -0.934 5.934 27 Si 0.905 3.095 28 H -0.292 1.292 29 H -0.287 1.287 30 H -0.287 1.287 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.194 0.806 39 H 0.177 0.823 40 H 0.186 0.814 41 H 0.062 0.938 42 H 0.147 0.853 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.384 0.616 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.472 22.988 -12.923 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.124 4.124 4 H 0.089 0.911 5 C -0.003 4.003 6 N -0.305 5.305 7 C 0.386 3.614 8 O -0.392 6.392 9 C -0.031 4.031 10 N -0.221 5.221 11 C 0.081 3.919 12 N -0.161 5.161 13 C 0.023 3.977 14 C -0.244 4.244 15 C 0.035 3.965 16 N -0.109 5.109 17 N -0.103 5.103 18 C -0.064 4.064 19 C -0.183 4.183 20 C 0.071 3.929 21 H 0.066 0.934 22 N -0.360 5.360 23 C -0.366 4.366 24 H 0.087 0.913 25 C -0.209 4.209 26 N -0.582 5.582 27 Si 0.736 3.264 28 H -0.218 1.218 29 H -0.214 1.214 30 H -0.213 1.213 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.211 0.789 39 H 0.195 0.805 40 H 0.203 0.797 41 H 0.080 0.920 42 H 0.163 0.837 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.217 0.783 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.842 21.767 -12.924 25.773 hybrid contribution 0.376 0.326 0.250 0.557 sum -4.465 22.093 -12.674 25.858 Atomic orbital electron populations 1.21856 0.96841 1.01061 1.01311 1.21451 0.94320 0.95566 1.03588 1.21793 0.98041 0.96247 0.96368 0.91102 1.21928 0.99363 0.80517 0.98473 1.47992 1.09638 1.05591 1.67276 1.16394 0.85284 0.80770 0.78989 1.90822 1.14744 1.85065 1.48581 1.24332 0.88293 0.95455 0.94975 1.70724 1.15666 1.07770 1.27971 1.23111 0.83968 0.90464 0.94370 1.68143 1.22683 1.06845 1.18384 1.23708 0.97947 0.88904 0.87179 1.22039 0.93148 1.03085 1.06159 1.22255 1.01452 0.79070 0.93689 1.49071 1.12750 1.07437 1.41638 1.78944 1.09998 0.93373 1.27980 1.23197 0.77309 1.07336 0.98585 1.22550 1.02140 0.98289 0.95297 1.20255 0.90535 0.91016 0.91138 0.93437 1.42394 1.16418 1.64519 1.12717 1.19182 0.91810 1.27058 0.98530 0.91289 1.24711 0.98075 1.01706 0.96457 1.69651 1.35250 1.48570 1.04739 0.86306 0.84316 0.79169 0.76627 1.21843 1.21381 1.21331 0.93145 0.92983 0.93199 0.92369 0.89663 0.90919 0.88964 0.78942 0.80530 0.79721 0.91994 0.83681 0.92392 0.90586 0.78259 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.67 37.16 0.36 -1.82 16 2 C -0.11 -1.85 5.31 -26.73 -0.14 -1.99 16 3 C -0.10 -1.80 1.92 -90.50 -0.17 -1.97 16 4 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 5 C 0.12 1.84 5.31 -3.71 -0.02 1.82 16 6 N -0.57 -9.31 2.97 -173.77 -0.52 -9.82 16 7 C 0.60 10.37 7.71 -12.20 -0.09 10.27 16 8 O -0.52 -9.85 16.51 5.34 0.09 -9.76 16 9 C 0.25 4.07 7.68 -156.79 -1.20 2.86 16 10 N -0.49 -7.57 7.54 -12.24 -0.09 -7.67 16 11 C 0.44 5.75 8.98 -323.05 -2.90 2.85 16 12 N -0.45 -4.64 10.48 -13.79 -0.14 -4.78 16 13 C 0.21 0.95 11.27 -17.07 -0.19 0.76 16 14 C -0.22 -0.53 10.06 -39.77 -0.40 -0.93 16 15 C 0.17 0.93 11.32 -16.54 -0.19 0.75 16 16 N -0.33 -3.71 3.91 -13.80 -0.05 -3.76 16 17 N -0.27 -3.99 12.78 32.02 0.41 -3.59 16 18 C 0.06 0.93 6.32 -3.71 -0.02 0.91 16 19 C -0.14 -2.65 5.66 -26.62 -0.15 -2.81 16 20 C 0.18 3.59 2.19 -67.89 -0.15 3.44 16 21 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 22 N -0.72 -17.76 4.33 -53.39 -0.23 -17.99 16 23 C -0.23 -6.42 9.93 -15.06 -0.15 -6.57 16 24 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 25 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 26 N -0.93 -28.18 13.06 55.49 0.72 -27.46 16 27 Si 0.90 22.49 29.55 -169.99 -5.02 17.46 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.69 7.22 -51.93 -0.37 1.31 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 1.43 5.76 -51.93 -0.30 1.13 16 38 H 0.19 0.03 8.06 -52.49 -0.42 -0.39 16 39 H 0.18 -0.36 8.06 -52.49 -0.42 -0.78 16 40 H 0.19 0.37 8.06 -52.48 -0.42 -0.05 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.15 2.37 3.64 -80.86 -0.29 2.08 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.38 10.18 7.51 -40.82 -0.31 9.87 16 46 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -36.39 375.67 -10.94 -47.33 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -6.24 Total: 7.29 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -5.53 Total: 7.08 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: 0.10 Total: -75.07 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.39 -10.94 -47.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037940607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.649 kcal (2) G-P(sol) polarization free energy of solvation -36.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds