Wall clock time and date at job start Wed Apr 1 2020 02:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47293 * 2 1 4 4 H 1.08998 * 109.52861 * 54.91625 * 3 2 1 5 5 C 1.53195 * 109.49575 * 294.83926 * 3 2 1 6 6 N 1.46930 * 108.77621 * 185.41076 * 5 3 2 7 7 C 1.34772 * 120.63343 * 233.58894 * 6 5 3 8 8 O 1.21525 * 119.99720 * 354.75726 * 7 6 5 9 9 C 1.48124 * 120.00223 * 174.76659 * 7 6 5 10 10 N 1.33476 * 125.32198 * 352.65705 * 9 7 6 11 11 C 1.32499 * 109.75297 * 179.86087 * 10 9 7 12 12 N 1.33982 * 132.34288 * 180.02562 * 11 10 9 13 13 C 1.31262 * 120.88455 * 180.35706 * 12 11 10 14 14 C 1.40176 * 120.35332 * 359.97179 * 13 12 11 15 15 C 1.35681 * 119.26931 * 0.03853 * 14 13 12 16 16 N 1.36162 * 119.03123 * 359.97438 * 15 14 13 17 17 N 1.31983 * 125.32707 * 172.96668 * 9 7 6 18 18 C 1.46933 * 118.73555 * 53.60688 * 6 5 3 19 19 C 1.53191 * 108.76537 * 306.38611 * 18 6 5 20 20 C 1.53034 * 109.31557 * 54.65348 * 19 18 6 21 21 H 1.09003 * 109.46092 * 58.62884 * 20 19 18 22 22 N 1.46499 * 109.46364 * 178.59853 * 20 19 18 23 23 C 1.36935 * 120.00093 * 275.03164 * 22 20 19 24 24 H 1.08000 * 120.00374 * 359.97438 * 23 22 20 25 25 C 1.38817 * 120.00002 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99879 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00120 * 179.97438 * 25 23 22 28 28 H 1.48499 * 109.46962 * 180.02562 * 27 25 23 29 29 H 1.48494 * 109.47218 * 300.00606 * 27 25 23 30 30 H 1.48508 * 109.46845 * 60.00639 * 27 25 23 31 31 H 1.09006 * 109.46883 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47190 * 300.00007 * 1 2 3 33 33 H 1.09001 * 109.47042 * 60.00248 * 1 2 3 34 34 H 1.08999 * 109.47190 * 239.99993 * 2 1 3 35 35 H 1.09001 * 109.46868 * 120.00278 * 2 1 3 36 36 H 1.09001 * 109.58852 * 305.19761 * 5 3 2 37 37 H 1.08998 * 109.58804 * 65.62588 * 5 3 2 38 38 H 1.07996 * 119.82538 * 180.02562 * 13 12 11 39 39 H 1.07991 * 120.36504 * 180.02562 * 14 13 12 40 40 H 1.08003 * 120.48256 * 179.97438 * 15 14 13 41 41 H 1.09006 * 109.58260 * 66.18070 * 18 6 5 42 42 H 1.08994 * 109.58531 * 186.46096 * 18 6 5 43 43 H 1.08998 * 109.50879 * 294.69591 * 19 18 6 44 44 H 1.08994 * 109.48425 * 174.60040 * 19 18 6 45 45 H 0.97001 * 119.99652 * 95.02563 * 22 20 19 46 46 H 0.96999 * 120.00116 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6048 1.9828 0.8406 5 6 1.6386 2.1267 -1.3105 6 7 2.2451 3.4643 -1.3508 7 6 1.4858 4.5564 -1.5682 8 8 0.3050 4.4335 -1.8276 9 6 2.0906 5.9063 -1.4910 10 7 3.3326 6.1733 -1.0815 11 6 3.5521 7.4787 -1.1385 12 7 4.6219 8.2279 -0.8396 13 6 4.5904 9.5329 -0.9772 14 6 3.4307 10.1682 -1.4424 15 6 2.3412 9.4195 -1.7480 16 7 2.4041 8.0680 -1.5946 17 7 1.4838 7.0339 -1.8110 18 6 3.6953 3.5887 -1.1499 19 6 4.0734 2.8882 0.1589 20 6 3.5652 1.4450 0.1257 21 1 4.0008 0.9262 -0.7282 22 7 3.9542 0.7620 1.3620 23 6 5.1921 0.1858 1.4656 24 1 5.8816 0.2345 0.6357 25 6 5.5608 -0.4610 2.6372 26 7 4.7204 -0.5208 3.6484 27 14 7.2492 -1.2476 2.7782 28 1 7.3951 -1.8694 4.1189 29 1 7.3989 -2.2895 1.7309 30 1 8.2956 -0.2095 2.5970 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 1.9965 1.5376 -2.1549 37 1 0.5533 2.2160 -1.3586 38 1 5.4628 10.1201 -0.7316 39 1 3.4047 11.2418 -1.5562 40 1 1.4373 9.8887 -2.1076 41 1 4.2209 3.1189 -1.9812 42 1 3.9674 4.6427 -1.0945 43 1 3.6188 3.4147 0.9981 44 1 5.1574 2.8897 0.2721 45 1 3.3348 0.7180 2.1072 46 1 4.9779 -0.9730 4.4670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037940607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:34 Heat of formation + Delta-G solvation = 112.530563 kcal Electronic energy + Delta-G solvation = -30248.689379 eV Core-core repulsion = 26176.212087 eV Total energy + Delta-G solvation = -4072.477291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.17690 -41.50737 -39.84615 -39.10498 -36.40261 -35.75244 -35.25584 -33.48425 -32.58989 -32.01875 -31.10387 -30.18407 -27.61221 -26.20069 -25.58753 -24.88022 -24.72390 -23.67899 -22.22322 -21.37209 -20.63518 -19.71805 -19.15313 -19.02738 -18.30294 -17.93303 -17.36221 -16.82234 -16.75210 -16.37950 -15.74856 -15.58658 -15.44717 -15.32296 -14.94475 -14.67621 -14.53346 -14.25009 -14.09282 -13.96759 -13.80256 -13.63136 -13.32105 -13.11604 -13.03338 -12.79602 -12.72154 -12.53321 -12.23145 -12.14529 -11.84651 -11.70407 -11.62213 -11.51911 -11.17635 -11.10762 -11.00739 -10.97583 -10.55002 -10.07177 -9.82814 -8.93361 -7.88883 -5.16450 -0.72988 -0.51351 0.53883 0.56708 1.48867 1.50935 1.51736 1.57367 1.86484 2.11549 2.32272 2.59558 2.74711 3.15052 3.44051 3.47251 3.73049 3.76726 3.91579 3.99097 4.12891 4.17428 4.29848 4.33257 4.36898 4.38291 4.43160 4.51642 4.62978 4.66041 4.76031 4.80265 4.86452 4.95731 4.99093 5.03795 5.13351 5.21873 5.24605 5.33099 5.39569 5.52167 5.53443 5.58447 5.68195 6.03230 6.26024 6.32219 6.49402 6.76688 7.38596 8.14070 8.38626 9.34546 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011851 B = 0.003037 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.102964 B = 9215.945011 C =11192.825388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.093 4.093 4 H 0.052 0.948 5 C 0.124 3.876 6 N -0.574 5.574 7 C 0.605 3.395 8 O -0.544 6.544 9 C 0.232 3.768 10 N -0.523 5.523 11 C 0.424 3.576 12 N -0.489 5.489 13 C 0.220 3.780 14 C -0.175 4.175 15 C 0.142 3.858 16 N -0.328 5.328 17 N -0.294 5.294 18 C 0.068 3.932 19 C -0.129 4.129 20 C 0.178 3.822 21 H 0.050 0.950 22 N -0.729 5.729 23 C -0.231 4.231 24 H 0.076 0.924 25 C -0.077 4.077 26 N -0.971 5.971 27 Si 0.969 3.031 28 H -0.299 1.299 29 H -0.278 1.278 30 H -0.279 1.279 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.242 0.758 39 H 0.238 0.762 40 H 0.219 0.781 41 H 0.078 0.922 42 H 0.152 0.848 43 H 0.036 0.964 44 H 0.062 0.938 45 H 0.370 0.630 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.592 26.318 -14.816 30.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.113 4.113 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.304 5.304 7 C 0.388 3.612 8 O -0.420 6.420 9 C -0.051 4.051 10 N -0.259 5.259 11 C 0.066 3.934 12 N -0.206 5.206 13 C 0.037 3.963 14 C -0.198 4.198 15 C 0.008 3.992 16 N -0.109 5.109 17 N -0.129 5.129 18 C -0.054 4.054 19 C -0.170 4.170 20 C 0.070 3.930 21 H 0.068 0.932 22 N -0.368 5.368 23 C -0.363 4.363 24 H 0.094 0.906 25 C -0.269 4.269 26 N -0.622 5.622 27 Si 0.799 3.201 28 H -0.226 1.226 29 H -0.204 1.204 30 H -0.206 1.206 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.258 0.742 39 H 0.254 0.746 40 H 0.235 0.765 41 H 0.096 0.904 42 H 0.168 0.832 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.202 0.798 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.940 25.183 -14.869 29.510 hybrid contribution 0.181 -0.317 0.807 0.885 sum -3.758 24.867 -14.062 28.814 Atomic orbital electron populations 1.21795 0.94713 1.02077 1.01794 1.21345 0.96160 0.94561 1.02240 1.21639 0.95859 0.96869 0.96938 0.92987 1.21917 0.99685 0.80374 0.97787 1.47996 1.09567 1.05779 1.67104 1.16567 0.84972 0.81465 0.78239 1.90782 1.15661 1.85704 1.49854 1.23903 0.89031 0.95153 0.97043 1.70374 1.15777 1.10152 1.29623 1.23146 0.85119 0.90273 0.94880 1.68266 1.22098 1.09358 1.20874 1.24788 1.00230 0.87273 0.84027 1.22795 0.90487 1.05318 1.01217 1.23288 1.04261 0.76909 0.94697 1.49079 1.11538 1.08733 1.41529 1.78729 1.11528 0.93893 1.28744 1.23117 0.77447 1.07646 0.97219 1.22328 1.00889 0.97471 0.96289 1.20447 0.92452 0.90980 0.89132 0.93159 1.42552 1.15519 1.64914 1.13832 1.19563 0.92600 1.25733 0.98402 0.90606 1.25492 1.01665 1.03239 0.96455 1.69821 1.37112 1.50157 1.05145 0.85272 0.80277 0.78390 0.76207 1.22557 1.20409 1.20566 0.91876 0.93657 0.91532 0.91312 0.93272 0.88808 0.88544 0.74161 0.74562 0.76471 0.90388 0.83229 0.94550 0.91946 0.79776 0.94285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.67 71.98 0.70 -3.41 16 2 C -0.10 -3.54 5.31 30.59 0.16 -3.38 16 3 C -0.09 -3.29 1.92 -10.72 -0.02 -3.31 16 4 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 5 C 0.12 3.82 5.31 86.36 0.46 4.28 16 6 N -0.57 -18.99 2.97 -821.97 -2.44 -21.43 16 7 C 0.60 21.45 7.71 86.87 0.67 22.12 16 8 O -0.54 -21.25 16.51 -3.79 -0.06 -21.31 16 9 C 0.23 7.76 7.68 137.39 1.06 8.82 16 10 N -0.52 -16.87 7.54 -192.63 -1.45 -18.32 16 11 C 0.42 11.02 8.98 261.57 2.35 13.37 16 12 N -0.49 -9.37 10.48 -197.54 -2.07 -11.45 16 13 C 0.22 1.03 11.27 85.25 0.96 1.99 16 14 C -0.17 0.12 10.06 22.15 0.22 0.35 16 15 C 0.14 1.07 11.32 83.43 0.94 2.01 16 16 N -0.33 -7.13 3.91 -197.59 -0.77 -7.90 16 17 N -0.29 -8.89 12.78 -52.60 -0.67 -9.56 16 18 C 0.07 2.23 6.32 86.36 0.55 2.78 16 19 C -0.13 -5.02 5.66 30.67 0.17 -4.85 16 20 C 0.18 7.29 2.19 45.02 0.10 7.39 16 21 H 0.05 2.04 8.08 -2.39 -0.02 2.02 16 22 N -0.73 -37.34 4.33 -322.82 -1.40 -38.74 16 23 C -0.23 -12.90 9.93 84.03 0.83 -12.07 16 24 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 25 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 26 N -0.97 -60.59 13.06 21.65 0.28 -60.30 16 27 Si 0.97 46.96 29.55 68.60 2.03 48.99 16 28 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 29 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 30 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 31 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.65 6.70 -2.39 -0.02 1.64 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.05 2.02 7.22 -2.39 -0.02 2.01 16 36 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.10 2.95 5.76 -2.39 -0.01 2.94 16 38 H 0.24 -1.40 8.06 -2.91 -0.02 -1.42 16 39 H 0.24 -2.95 8.06 -2.92 -0.02 -2.97 16 40 H 0.22 0.02 8.06 -2.91 -0.02 0.00 16 41 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 42 H 0.15 5.08 3.64 -59.50 -0.22 4.86 16 43 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.37 20.73 7.51 -92.71 -0.70 20.03 16 46 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -86.30 375.67 3.18 -83.13 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.12 Total: 24.80 kcal Atomic # 6 Polarization: 22.47 SS G_CDS: 9.62 Total: 32.09 kcal Atomic # 7 Polarization: -159.17 SS G_CDS: -8.53 Total: -167.70 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.06 Total: -21.31 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -86.30 3.18 -83.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037940607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.656 kcal (2) G-P(sol) polarization free energy of solvation -86.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds