Wall clock time and date at job start Wed Apr 1 2020 03:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.58769 * 2 1 4 4 C 1.53196 * 109.58567 * 120.28111 * 2 1 3 5 5 C 1.53044 * 109.33657 * 65.13693 * 4 2 1 6 6 H 1.08996 * 109.46009 * 301.35915 * 5 4 2 7 7 N 1.46505 * 109.45821 * 181.39974 * 5 4 2 8 8 C 1.36932 * 119.99656 * 155.00152 * 7 5 4 9 9 H 1.08004 * 120.00561 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99894 * 180.02562 * 8 7 5 11 11 N 1.31626 * 120.00164 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99971 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47199 * 89.99961 * 12 10 8 14 14 H 1.48501 * 109.46890 * 209.99981 * 12 10 8 15 15 H 1.48497 * 109.46909 * 329.99804 * 12 10 8 16 16 C 1.53112 * 109.50343 * 61.35039 * 5 4 2 17 17 C 1.53201 * 109.32629 * 298.65433 * 16 5 4 18 18 N 1.46920 * 108.77496 * 54.63743 * 17 16 5 19 19 C 1.34778 * 120.63212 * 126.36601 * 18 17 16 20 20 O 1.21571 * 120.00306 * 176.22280 * 19 18 17 21 21 C 1.47717 * 119.99682 * 356.23131 * 19 18 17 22 22 C 1.40116 * 120.35459 * 50.66133 * 21 19 18 23 23 N 1.31256 * 121.15098 * 180.02562 * 22 21 19 24 24 C 1.32716 * 121.80048 * 359.97438 * 23 22 21 25 25 C 1.40781 * 120.68366 * 359.97438 * 24 23 22 26 26 C 1.39434 * 120.34829 * 230.38467 * 21 19 18 27 27 N 1.35327 * 107.76250 * 179.97438 * 25 24 23 28 28 N 1.28667 * 109.99709 * 359.97438 * 27 25 24 29 29 N 1.37123 * 133.40422 * 179.97438 * 24 23 22 30 30 C 1.46502 * 126.59274 * 359.97438 * 29 24 23 31 31 H 1.08997 * 109.47016 * 299.71915 * 1 2 3 32 32 H 1.09004 * 109.46907 * 59.71715 * 1 2 3 33 33 H 1.09003 * 109.47009 * 179.71429 * 1 2 3 34 34 H 1.09000 * 109.49772 * 185.10288 * 4 2 1 35 35 H 1.08996 * 109.49957 * 305.17455 * 4 2 1 36 36 H 0.96997 * 119.99865 * 334.99835 * 7 5 4 37 37 H 0.97003 * 120.00018 * 179.97438 * 11 10 8 38 38 H 1.08999 * 109.48579 * 178.70043 * 16 5 4 39 39 H 1.08991 * 109.51476 * 58.62608 * 16 5 4 40 40 H 1.08993 * 109.58384 * 294.84911 * 17 16 5 41 41 H 1.08999 * 109.70118 * 174.49138 * 17 16 5 42 42 H 1.08000 * 119.42693 * 0.02562 * 22 21 19 43 43 H 1.07999 * 120.95656 * 359.97438 * 26 21 19 44 44 H 1.09001 * 109.46938 * 89.99954 * 30 29 24 45 45 H 1.09002 * 109.47273 * 209.99917 * 30 29 24 46 46 H 1.08997 * 109.47008 * 330.00616 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 1.6414 -2.2027 1.1738 6 1 0.5565 -2.2801 1.1030 7 7 2.1022 -2.8942 2.3803 8 6 1.4648 -4.0295 2.8044 9 1 0.6221 -4.4150 2.2496 10 6 1.9011 -4.6844 3.9478 11 7 1.2881 -5.7755 4.3558 12 14 3.3582 -4.0174 4.9078 13 1 2.8768 -3.0629 5.9385 14 1 4.0720 -5.1400 5.5676 15 1 4.2840 -3.3190 3.9803 16 6 2.2801 -2.8465 -0.0599 17 6 1.7692 -2.1427 -1.3210 18 7 2.0226 -0.7011 -1.1936 19 6 2.6945 -0.0345 -2.1531 20 8 2.8382 1.1698 -2.0696 21 6 3.2561 -0.7672 -3.3062 22 6 2.4541 -1.6476 -4.0444 23 7 2.9371 -2.3070 -5.0714 24 6 4.1995 -2.1723 -5.4581 25 6 5.0726 -1.3071 -4.7718 26 6 4.5884 -0.5856 -3.6752 27 7 6.2800 -1.3717 -5.3795 28 7 6.2309 -2.1918 -6.3697 29 7 4.9396 -2.7285 -6.4696 30 6 4.4716 -3.6988 -7.4624 31 1 -0.3633 0.5095 0.8925 32 1 -0.3633 0.5182 -0.8875 33 1 -0.3633 -1.0277 -0.0051 34 1 3.1297 -0.6487 1.2922 35 1 1.6079 -0.2754 2.1372 36 1 2.8588 -2.5478 2.8787 37 1 1.5932 -6.2333 5.1547 38 1 2.0123 -3.9024 -0.0987 39 1 3.3640 -2.7479 -0.0020 40 1 0.6987 -2.3174 -1.4287 41 1 2.2924 -2.5297 -2.1954 42 1 1.4206 -1.7862 -3.7634 43 1 5.2292 0.0900 -3.1281 44 1 4.0820 -3.1696 -8.3321 45 1 5.3016 -4.3364 -7.7668 46 1 3.6828 -4.3123 -7.0271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044691102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:51 Heat of formation + Delta-G solvation = 119.987288 kcal Electronic energy + Delta-G solvation = -30169.435517 eV Core-core repulsion = 26097.281574 eV Total energy + Delta-G solvation = -4072.153944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.73372 -40.71782 -38.84432 -37.71042 -35.27825 -34.81121 -33.10838 -32.36212 -31.93307 -30.83769 -29.88041 -28.12487 -27.55135 -25.53437 -24.88738 -23.97868 -22.98316 -21.91634 -21.82503 -20.83583 -19.23347 -18.63265 -18.25864 -17.49994 -16.90847 -16.87178 -16.60806 -15.90604 -15.15954 -15.07246 -14.58152 -14.19143 -14.12846 -14.06606 -13.82848 -13.66003 -13.57869 -13.42490 -13.30872 -12.99310 -12.87166 -12.79095 -12.59763 -12.14790 -12.05311 -11.87886 -11.53654 -11.37541 -11.10548 -11.02059 -10.93439 -10.63455 -10.45088 -10.26396 -9.85539 -9.80896 -9.65381 -9.61726 -9.26815 -8.98066 -8.71480 -7.34941 -5.83584 -3.19713 -0.18670 0.35049 1.37514 1.68333 2.37212 2.70395 3.13703 3.33357 3.35686 3.36521 3.41883 3.70718 3.86638 4.10060 4.20977 4.31057 4.53543 4.64206 4.75761 4.87257 4.93767 4.95731 4.99507 5.01557 5.12876 5.28953 5.30663 5.39545 5.42628 5.47817 5.58287 5.64426 5.66959 5.71989 5.90632 5.94330 5.96965 6.10128 6.17156 6.27670 6.30313 6.44061 6.70780 6.86033 7.04948 7.25600 7.41393 7.91389 7.92957 8.35431 9.13473 9.86379 10.05629 11.34494 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.002843 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.320579 B = 9846.937286 C =10831.085381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.099 0.901 4 C -0.139 4.139 5 C 0.183 3.817 6 H 0.062 0.938 7 N -0.748 5.748 8 C -0.245 4.245 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.933 5.933 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.152 4.152 17 C 0.097 3.903 18 N -0.591 5.591 19 C 0.571 3.429 20 O -0.534 6.534 21 C -0.195 4.195 22 C 0.211 3.789 23 N -0.484 5.484 24 C 0.284 3.716 25 C -0.070 4.070 26 C 0.070 3.930 27 N -0.198 5.198 28 N 0.010 4.990 29 N -0.385 5.385 30 C 0.101 3.899 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.081 0.919 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.183 0.817 43 H 0.160 0.840 44 H 0.084 0.916 45 H 0.099 0.901 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.983 8.601 -21.789 23.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.117 0.883 4 C -0.178 4.178 5 C 0.074 3.926 6 H 0.080 0.920 7 N -0.389 5.389 8 C -0.375 4.375 9 H 0.108 0.892 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.210 1.210 14 H -0.218 1.218 15 H -0.204 1.204 16 C -0.193 4.193 17 C -0.026 4.026 18 N -0.323 5.323 19 C 0.357 3.643 20 O -0.411 6.411 21 C -0.204 4.204 22 C 0.037 3.963 23 N -0.198 5.198 24 C 0.041 3.959 25 C -0.196 4.196 26 C 0.040 3.960 27 N -0.078 5.078 28 N 0.029 4.971 29 N -0.181 5.181 30 C -0.040 4.040 31 H 0.089 0.911 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.200 0.800 43 H 0.177 0.823 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.836 8.358 -22.912 24.553 hybrid contribution 0.656 0.471 1.444 1.655 sum 3.492 8.828 -21.468 23.473 Atomic orbital electron populations 1.22161 0.94529 1.03062 1.02272 1.21233 0.94401 0.97027 0.83242 0.88305 1.22279 1.01375 0.97317 0.96791 1.20190 0.97480 0.88735 0.86224 0.92039 1.42799 1.37548 1.30632 1.27965 1.19043 1.11192 0.99986 1.07263 0.89153 1.24673 0.98899 0.97226 0.98205 1.69699 1.42718 1.19570 1.26031 0.86572 0.83479 0.78174 0.80405 1.21043 1.21781 1.20362 1.22665 1.01105 1.01010 0.94496 1.22144 1.01391 0.79065 0.99981 1.48188 1.54313 1.09705 1.20128 1.17754 0.78264 0.86608 0.81681 1.90810 1.59287 1.13543 1.77438 1.20705 0.95472 1.03328 1.00926 1.23143 0.99920 0.86775 0.86453 1.66668 1.10510 1.25998 1.16598 1.19522 0.91180 0.94249 0.90949 1.20313 0.91832 1.05161 1.02275 1.20909 0.93437 0.91828 0.89856 1.74880 1.19148 1.11252 1.02497 1.81768 0.96118 1.06178 1.13051 1.49999 1.07930 1.35842 1.24288 1.22110 1.01737 0.90270 0.89883 0.91097 0.92574 0.91401 0.91851 0.90212 0.80643 0.93014 0.90029 0.92250 0.90459 0.90356 0.80028 0.82269 0.89729 0.88269 0.88207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.02 37.16 0.34 -1.37 16 2 C 0.14 1.73 3.19 -67.60 -0.22 1.51 16 3 H 0.10 1.25 7.03 -51.93 -0.37 0.88 16 4 C -0.14 -1.94 5.02 -26.61 -0.13 -2.08 16 5 C 0.18 3.06 2.53 -67.85 -0.17 2.89 16 6 H 0.06 1.05 6.44 -51.93 -0.33 0.71 16 7 N -0.75 -16.34 4.93 -53.35 -0.26 -16.61 16 8 C -0.25 -6.48 10.41 -15.06 -0.16 -6.64 16 9 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 10 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 11 N -0.93 -28.39 13.97 55.49 0.78 -27.61 16 12 Si 0.88 21.50 27.74 -169.99 -4.71 16.79 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 H -0.28 -6.38 6.52 56.52 0.37 -6.02 16 16 C -0.15 -2.24 5.66 -26.57 -0.15 -2.39 16 17 C 0.10 1.05 4.96 -3.71 -0.02 1.03 16 18 N -0.59 -6.83 2.68 -166.37 -0.45 -7.28 16 19 C 0.57 7.01 7.25 -12.39 -0.09 6.92 16 20 O -0.53 -8.13 16.48 5.30 0.09 -8.04 16 21 C -0.20 -2.08 5.01 -104.87 -0.53 -2.60 16 22 C 0.21 1.94 8.52 -17.09 -0.15 1.79 16 23 N -0.48 -5.01 10.37 -12.03 -0.12 -5.14 16 24 C 0.28 3.21 8.05 -155.92 -1.26 1.96 16 25 C -0.07 -0.84 7.27 -84.74 -0.62 -1.46 16 26 C 0.07 0.77 9.93 -38.51 -0.38 0.39 16 27 N -0.20 -2.53 12.40 32.17 0.40 -2.14 16 28 N 0.01 0.12 13.71 60.35 0.83 0.95 16 29 N -0.38 -3.83 4.10 -67.18 -0.28 -4.11 16 30 C 0.10 0.52 11.54 59.85 0.69 1.21 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.73 5.72 -51.93 -0.30 0.44 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.36 7.94 5.66 -40.82 -0.23 7.71 16 37 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 38 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 0.72 7.48 -51.93 -0.39 0.33 16 41 H 0.08 0.74 4.54 -51.93 -0.24 0.51 16 42 H 0.18 1.19 7.06 -52.49 -0.37 0.82 16 43 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 372.60 15.07 5.62 5.62 Total: -1.00 -33.84 372.60 -7.09 -40.93 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.04 Total: 5.40 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.93 Total: 1.24 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 0.89 Total: -61.93 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.04 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.79 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.84 -7.09 -40.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044691102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.922 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds