Wall clock time and date at job start Wed Apr 1 2020 03:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.58769 * 2 1 4 4 C 1.53196 * 109.58567 * 120.28111 * 2 1 3 5 5 C 1.53044 * 109.33657 * 65.13693 * 4 2 1 6 6 H 1.08996 * 109.46009 * 301.35915 * 5 4 2 7 7 N 1.46505 * 109.45821 * 181.39974 * 5 4 2 8 8 C 1.36932 * 119.99656 * 155.00152 * 7 5 4 9 9 H 1.08004 * 120.00561 * 359.97438 * 8 7 5 10 10 C 1.38809 * 119.99894 * 180.02562 * 8 7 5 11 11 N 1.31626 * 120.00164 * 179.97438 * 10 8 7 12 12 Si 1.86805 * 119.99971 * 359.97438 * 10 8 7 13 13 H 1.48493 * 109.47199 * 89.99961 * 12 10 8 14 14 H 1.48501 * 109.46890 * 209.99981 * 12 10 8 15 15 H 1.48497 * 109.46909 * 329.99804 * 12 10 8 16 16 C 1.53112 * 109.50343 * 61.35039 * 5 4 2 17 17 C 1.53201 * 109.32629 * 298.65433 * 16 5 4 18 18 N 1.46920 * 108.77496 * 54.63743 * 17 16 5 19 19 C 1.34778 * 120.63212 * 126.36601 * 18 17 16 20 20 O 1.21571 * 120.00306 * 176.22280 * 19 18 17 21 21 C 1.47717 * 119.99682 * 356.23131 * 19 18 17 22 22 C 1.40116 * 120.35459 * 50.66133 * 21 19 18 23 23 N 1.31256 * 121.15098 * 180.02562 * 22 21 19 24 24 C 1.32716 * 121.80048 * 359.97438 * 23 22 21 25 25 C 1.40781 * 120.68366 * 359.97438 * 24 23 22 26 26 C 1.39434 * 120.34829 * 230.38467 * 21 19 18 27 27 N 1.35327 * 107.76250 * 179.97438 * 25 24 23 28 28 N 1.28667 * 109.99709 * 359.97438 * 27 25 24 29 29 N 1.37123 * 133.40422 * 179.97438 * 24 23 22 30 30 C 1.46502 * 126.59274 * 359.97438 * 29 24 23 31 31 H 1.08997 * 109.47016 * 299.71915 * 1 2 3 32 32 H 1.09004 * 109.46907 * 59.71715 * 1 2 3 33 33 H 1.09003 * 109.47009 * 179.71429 * 1 2 3 34 34 H 1.09000 * 109.49772 * 185.10288 * 4 2 1 35 35 H 1.08996 * 109.49957 * 305.17455 * 4 2 1 36 36 H 0.96997 * 119.99865 * 334.99835 * 7 5 4 37 37 H 0.97003 * 120.00018 * 179.97438 * 11 10 8 38 38 H 1.08999 * 109.48579 * 178.70043 * 16 5 4 39 39 H 1.08991 * 109.51476 * 58.62608 * 16 5 4 40 40 H 1.08993 * 109.58384 * 294.84911 * 17 16 5 41 41 H 1.08999 * 109.70118 * 174.49138 * 17 16 5 42 42 H 1.08000 * 119.42693 * 0.02562 * 22 21 19 43 43 H 1.07999 * 120.95656 * 359.97438 * 26 21 19 44 44 H 1.09001 * 109.46938 * 89.99954 * 30 29 24 45 45 H 1.09002 * 109.47273 * 209.99917 * 30 29 24 46 46 H 1.08997 * 109.47008 * 330.00616 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 1.6414 -2.2027 1.1738 6 1 0.5565 -2.2801 1.1030 7 7 2.1022 -2.8942 2.3803 8 6 1.4648 -4.0295 2.8044 9 1 0.6221 -4.4150 2.2496 10 6 1.9011 -4.6844 3.9478 11 7 1.2881 -5.7755 4.3558 12 14 3.3582 -4.0174 4.9078 13 1 2.8768 -3.0629 5.9385 14 1 4.0720 -5.1400 5.5676 15 1 4.2840 -3.3190 3.9803 16 6 2.2801 -2.8465 -0.0599 17 6 1.7692 -2.1427 -1.3210 18 7 2.0226 -0.7011 -1.1936 19 6 2.6945 -0.0345 -2.1531 20 8 2.8382 1.1698 -2.0696 21 6 3.2561 -0.7672 -3.3062 22 6 2.4541 -1.6476 -4.0444 23 7 2.9371 -2.3070 -5.0714 24 6 4.1995 -2.1723 -5.4581 25 6 5.0726 -1.3071 -4.7718 26 6 4.5884 -0.5856 -3.6752 27 7 6.2800 -1.3717 -5.3795 28 7 6.2309 -2.1918 -6.3697 29 7 4.9396 -2.7285 -6.4696 30 6 4.4716 -3.6988 -7.4624 31 1 -0.3633 0.5095 0.8925 32 1 -0.3633 0.5182 -0.8875 33 1 -0.3633 -1.0277 -0.0051 34 1 3.1297 -0.6487 1.2922 35 1 1.6079 -0.2754 2.1372 36 1 2.8588 -2.5478 2.8787 37 1 1.5932 -6.2333 5.1547 38 1 2.0123 -3.9024 -0.0987 39 1 3.3640 -2.7479 -0.0020 40 1 0.6987 -2.3174 -1.4287 41 1 2.2924 -2.5297 -2.1954 42 1 1.4206 -1.7862 -3.7634 43 1 5.2292 0.0900 -3.1281 44 1 4.0820 -3.1696 -8.3321 45 1 5.3016 -4.3364 -7.7668 46 1 3.6828 -4.3123 -7.0271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044691102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:50 Heat of formation + Delta-G solvation = 96.498708 kcal Electronic energy + Delta-G solvation = -30170.454059 eV Core-core repulsion = 26097.281574 eV Total energy + Delta-G solvation = -4073.172485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.54515 -41.69736 -39.74867 -38.82470 -36.36609 -36.01320 -34.19353 -33.64307 -33.15872 -31.79877 -31.34774 -28.78821 -28.59716 -26.41604 -25.95572 -25.26171 -24.25484 -23.06409 -22.63526 -22.03743 -20.33396 -19.84028 -19.19058 -18.90738 -17.79438 -17.69643 -17.50939 -16.84374 -16.76917 -16.07152 -15.83720 -15.43210 -15.16863 -14.98355 -14.86814 -14.68946 -14.53441 -14.38048 -14.24134 -14.10686 -13.97165 -13.81469 -13.65034 -13.40571 -13.00012 -12.96324 -12.83072 -12.66697 -12.40515 -12.17164 -12.10240 -11.99126 -11.91996 -11.76422 -11.39248 -11.09209 -10.90082 -10.71262 -10.42718 -10.08113 -9.72050 -9.27011 -7.98960 -5.31004 -0.99021 -0.47752 0.68677 0.84659 1.39738 1.40939 1.41981 1.48230 1.77794 2.30483 2.50555 2.58264 2.95542 3.04825 3.27157 3.33247 3.45360 3.51192 3.58408 3.85026 3.98925 4.10121 4.14240 4.27198 4.28512 4.31112 4.33258 4.52805 4.57339 4.59206 4.61017 4.64085 4.68396 4.78341 4.81115 4.89666 5.06036 5.09778 5.11552 5.24907 5.29638 5.38073 5.53450 5.62913 5.82764 6.24899 6.25746 6.30265 6.58338 6.96203 7.11996 7.89571 8.06268 9.22394 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012775 B = 0.002843 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.320579 B = 9846.937286 C =10831.085381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.148 3.852 3 H 0.097 0.903 4 C -0.130 4.130 5 C 0.176 3.824 6 H 0.061 0.939 7 N -0.754 5.754 8 C -0.218 4.218 9 H 0.065 0.935 10 C -0.064 4.064 11 N -0.984 5.984 12 Si 0.947 3.053 13 H -0.280 1.280 14 H -0.302 1.302 15 H -0.256 1.256 16 C -0.145 4.145 17 C 0.106 3.894 18 N -0.588 5.588 19 C 0.578 3.422 20 O -0.564 6.564 21 C -0.196 4.196 22 C 0.219 3.781 23 N -0.483 5.483 24 C 0.273 3.727 25 C -0.086 4.086 26 C 0.067 3.933 27 N -0.223 5.223 28 N -0.002 5.002 29 N -0.376 5.376 30 C 0.089 3.911 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.362 0.638 37 H 0.255 0.745 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.214 0.786 43 H 0.163 0.837 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 9.565 -23.424 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.045 3.955 3 H 0.115 0.885 4 C -0.169 4.169 5 C 0.069 3.931 6 H 0.079 0.921 7 N -0.396 5.396 8 C -0.349 4.349 9 H 0.083 0.917 10 C -0.256 4.256 11 N -0.635 5.635 12 Si 0.776 3.224 13 H -0.207 1.207 14 H -0.229 1.229 15 H -0.181 1.181 16 C -0.186 4.186 17 C -0.016 4.016 18 N -0.319 5.319 19 C 0.365 3.635 20 O -0.443 6.443 21 C -0.205 4.205 22 C 0.045 3.955 23 N -0.197 5.197 24 C 0.030 3.970 25 C -0.212 4.212 26 C 0.036 3.964 27 N -0.102 5.102 28 N 0.016 4.984 29 N -0.173 5.173 30 C -0.050 4.050 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.194 0.806 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.231 0.769 43 H 0.181 0.819 44 H 0.121 0.879 45 H 0.135 0.865 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.530 9.352 -24.621 26.458 hybrid contribution 0.681 0.167 1.835 1.964 sum 3.212 9.518 -22.786 24.902 Atomic orbital electron populations 1.22122 0.92992 1.03194 1.03202 1.21169 0.95490 0.96473 0.82322 0.88539 1.22171 1.01079 0.95415 0.98219 1.20464 0.97566 0.90107 0.85006 0.92067 1.42885 1.37310 1.29650 1.29726 1.19036 1.09618 1.00353 1.05904 0.91686 1.25404 1.02198 0.97989 0.99965 1.69867 1.45066 1.21673 1.26925 0.85523 0.80498 0.77227 0.79172 1.20660 1.22892 1.18120 1.22471 1.00358 1.00257 0.95490 1.22147 1.03006 0.78094 0.98390 1.48184 1.53981 1.09861 1.19863 1.17850 0.77589 0.86167 0.81876 1.90804 1.60321 1.14968 1.78207 1.20598 0.95432 1.03790 1.00724 1.23622 1.00839 0.85533 0.85509 1.66792 1.09845 1.26195 1.16858 1.19753 0.91542 0.94404 0.91347 1.20506 0.91947 1.05913 1.02875 1.21006 0.93872 0.91783 0.89736 1.74845 1.19923 1.12187 1.03241 1.81686 0.97198 1.06434 1.13033 1.50368 1.07147 1.35491 1.24249 1.22542 1.02829 0.90046 0.89576 0.90526 0.91411 0.91572 0.92418 0.89971 0.80578 0.93584 0.91767 0.93259 0.87945 0.88500 0.76947 0.81947 0.87905 0.86477 0.87149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.02 71.98 0.65 -2.19 16 2 C 0.15 3.20 3.19 44.98 0.14 3.35 16 3 H 0.10 2.23 7.03 -2.39 -0.02 2.21 16 4 C -0.13 -3.40 5.02 30.67 0.15 -3.24 16 5 C 0.18 5.61 2.53 45.04 0.11 5.73 16 6 H 0.06 1.98 6.44 -2.39 -0.02 1.97 16 7 N -0.75 -32.19 4.93 -322.69 -1.59 -33.78 16 8 C -0.22 -11.57 10.41 84.03 0.87 -10.70 16 9 H 0.07 3.73 8.06 -2.91 -0.02 3.71 16 10 C -0.06 -3.65 5.50 84.86 0.47 -3.19 16 11 N -0.98 -61.37 13.97 21.65 0.30 -61.07 16 12 Si 0.95 44.57 27.74 68.60 1.90 46.47 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 14 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 15 H -0.26 -10.99 6.52 99.48 0.65 -10.34 16 16 C -0.14 -4.03 5.66 30.70 0.17 -3.86 16 17 C 0.11 1.97 4.96 86.37 0.43 2.40 16 18 N -0.59 -12.00 2.68 -798.55 -2.14 -14.14 16 19 C 0.58 12.89 7.25 86.75 0.63 13.51 16 20 O -0.56 -16.25 16.48 -3.94 -0.06 -16.32 16 21 C -0.20 -3.76 5.01 -20.03 -0.10 -3.86 16 22 C 0.22 3.36 8.52 85.23 0.73 4.09 16 23 N -0.48 -8.75 10.37 -191.98 -1.99 -10.74 16 24 C 0.27 5.72 8.05 134.01 1.08 6.80 16 25 C -0.09 -1.99 7.27 39.63 0.29 -1.71 16 26 C 0.07 1.40 9.93 22.96 0.23 1.63 16 27 N -0.22 -5.66 12.40 -52.14 -0.65 -6.30 16 28 N 0.00 -0.06 13.71 37.02 0.51 0.45 16 29 N -0.38 -6.90 4.10 -366.45 -1.50 -8.41 16 30 C 0.09 0.72 11.54 127.77 1.47 2.19 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.23 5.72 -2.39 -0.01 1.21 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.36 15.32 5.66 -92.71 -0.52 14.79 16 37 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.10 1.48 7.48 -2.39 -0.02 1.47 16 41 H 0.10 1.50 4.54 -2.39 -0.01 1.49 16 42 H 0.21 1.83 7.06 -2.91 -0.02 1.81 16 43 H 0.16 3.16 8.06 -2.91 -0.02 3.14 16 44 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -74.39 372.60 2.56 -71.84 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.45 Total: 21.05 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 7.33 Total: 10.95 kcal Atomic # 7 Polarization: -126.93 SS G_CDS: -7.06 Total: -133.99 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.06 Total: -16.32 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.90 Total: 46.47 kcal Total: -74.39 2.56 -71.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044691102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.335 kcal (2) G-P(sol) polarization free energy of solvation -74.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds