Wall clock time and date at job start Wed Apr 1 2020 03:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.58370 * 2 1 4 4 C 1.53192 * 109.58855 * 120.28391 * 2 1 3 5 5 C 1.53042 * 109.30957 * 174.56698 * 4 2 1 6 6 H 1.08998 * 109.46010 * 58.64514 * 5 4 2 7 7 N 1.46504 * 109.45343 * 178.61210 * 5 4 2 8 8 C 1.36937 * 119.99672 * 205.02256 * 7 5 4 9 9 H 1.08002 * 120.00126 * 359.73366 * 8 7 5 10 10 C 1.38812 * 119.99823 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99821 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00125 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47154 * 89.99856 * 12 10 8 14 14 H 1.48496 * 109.47143 * 209.99438 * 12 10 8 15 15 H 1.48494 * 109.47201 * 329.99844 * 12 10 8 16 16 C 1.53037 * 109.52939 * 298.62331 * 5 4 2 17 17 C 1.53199 * 109.30795 * 61.39068 * 16 5 4 18 18 N 1.46929 * 108.76658 * 305.34215 * 17 16 5 19 19 C 1.34776 * 120.63196 * 233.64230 * 18 17 16 20 20 O 1.21572 * 119.99731 * 186.22304 * 19 18 17 21 21 C 1.47722 * 120.00052 * 6.22422 * 19 18 17 22 22 C 1.40119 * 120.35116 * 33.47135 * 21 19 18 23 23 N 1.31257 * 121.14807 * 179.71707 * 22 21 19 24 24 C 1.32721 * 121.79887 * 0.55349 * 23 22 21 25 25 C 1.40786 * 120.68134 * 359.73983 * 24 23 22 26 26 C 1.39427 * 120.35048 * 213.75133 * 21 19 18 27 27 N 1.35332 * 107.75522 * 179.97438 * 25 24 23 28 28 N 1.28669 * 109.99893 * 0.02562 * 27 25 24 29 29 N 1.37116 * 133.40166 * 179.74168 * 24 23 22 30 30 C 1.46500 * 126.59287 * 359.95907 * 29 24 23 31 31 H 1.09003 * 109.47689 * 292.57641 * 1 2 3 32 32 H 1.09004 * 109.47450 * 52.58238 * 1 2 3 33 33 H 1.09004 * 109.47082 * 172.57588 * 1 2 3 34 34 H 1.08995 * 109.49431 * 54.61749 * 4 2 1 35 35 H 1.08999 * 109.49325 * 294.51883 * 4 2 1 36 36 H 0.96998 * 120.00080 * 25.02819 * 7 5 4 37 37 H 0.97000 * 119.99742 * 180.02562 * 11 10 8 38 38 H 1.08993 * 109.50017 * 181.32586 * 16 5 4 39 39 H 1.08993 * 109.49964 * 301.42577 * 16 5 4 40 40 H 1.08996 * 109.58156 * 185.56390 * 17 16 5 41 41 H 1.08999 * 109.71605 * 65.20519 * 17 16 5 42 42 H 1.07998 * 119.42465 * 0.02562 * 22 21 19 43 43 H 1.08000 * 120.95345 * 0.02616 * 26 21 19 44 44 H 1.08994 * 109.47686 * 270.01879 * 30 29 24 45 45 H 1.09002 * 109.46899 * 30.02883 * 30 29 24 46 46 H 1.09008 * 109.47047 * 150.02057 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 1.2463 5 6 3.5678 -0.8432 1.1728 6 1 4.0044 0.1529 1.1019 7 7 4.0654 -1.5095 2.3790 8 6 5.3488 -1.2892 2.8027 9 1 5.9956 -0.6278 2.2453 10 6 5.8205 -1.9209 3.9453 11 7 7.0539 -1.7088 4.3528 12 14 4.7048 -3.0718 4.9043 13 1 4.8513 -4.4537 4.3806 14 1 5.0820 -3.0443 6.3403 15 1 3.2942 -2.6327 4.7545 16 6 3.9601 -1.6609 -0.0599 17 6 3.4685 -0.9434 -1.3211 18 7 2.0253 -0.6990 -1.1937 19 6 1.1721 -1.1086 -2.1532 20 8 -0.0029 -0.8025 -2.0928 21 6 1.6646 -1.9294 -3.2783 22 6 2.7058 -2.8465 -3.0830 23 7 3.1519 -3.5876 -4.0702 24 6 2.6492 -3.4971 -5.2952 25 6 1.6049 -2.5963 -5.5783 26 6 1.1024 -1.7956 -4.5471 27 7 1.2987 -2.7188 -6.8909 28 7 2.0529 -3.6064 -7.4377 29 7 2.9276 -4.1336 -6.4773 30 6 3.9447 -5.1653 -6.6952 31 1 -0.3634 0.3945 0.9489 32 1 -0.3634 0.6244 -0.8162 33 1 -0.3633 -1.0191 -0.1328 34 1 1.6050 -1.7246 1.2920 35 1 1.7638 -0.1654 2.1371 36 1 3.4859 -2.1066 2.8773 37 1 7.3836 -2.1505 5.1510 38 1 5.0446 -1.7628 -0.0989 39 1 3.5033 -2.6488 -0.0017 40 1 3.6576 -1.5682 -2.1940 41 1 3.9917 0.0064 -1.4314 42 1 3.1456 -2.9489 -2.1019 43 1 0.3020 -1.0935 -4.7288 44 1 4.8857 -4.6939 -6.9783 45 1 4.0858 -5.7359 -5.7772 46 1 3.6191 -5.8339 -7.4921 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044691106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:54 Heat of formation + Delta-G solvation = 145.065680 kcal Electronic energy + Delta-G solvation = -30242.278823 eV Core-core repulsion = 26171.212361 eV Total energy + Delta-G solvation = -4071.066463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.74875 -40.91387 -38.79833 -37.63464 -35.28386 -34.81038 -33.42961 -32.38727 -32.05255 -30.73031 -29.89189 -28.13126 -27.34163 -25.55991 -24.83410 -24.03664 -22.80686 -21.96043 -21.84809 -20.45179 -19.84951 -18.72888 -18.09996 -17.54648 -17.06332 -16.87309 -16.40783 -16.12446 -15.15899 -14.84544 -14.61266 -14.29621 -14.21313 -14.18786 -13.93283 -13.70707 -13.44857 -13.38562 -13.27755 -12.86986 -12.79921 -12.65777 -12.36860 -12.24442 -12.01759 -11.95785 -11.52608 -11.37477 -11.09569 -11.01784 -10.94578 -10.61964 -10.38451 -10.15595 -10.00493 -9.66748 -9.59836 -9.35911 -9.19606 -8.99761 -8.63019 -7.36776 -5.84391 -3.20878 -0.18699 0.29373 1.37653 1.67634 2.45525 2.70475 3.19936 3.32362 3.35444 3.37199 3.41194 3.70956 3.85549 4.10854 4.23146 4.33253 4.52553 4.66180 4.75068 4.85026 4.88603 4.96013 4.99122 5.03114 5.14673 5.29986 5.31359 5.39770 5.41296 5.47668 5.64757 5.65904 5.71091 5.82228 5.93116 5.95224 5.96437 6.13801 6.22288 6.28159 6.33128 6.56370 6.68833 6.82840 7.07745 7.27925 7.40682 7.90577 7.98093 8.34523 9.12439 9.85134 10.04221 11.33653 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.002859 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.584977 B = 9792.540634 C =11291.771918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.150 3.850 3 H 0.077 0.923 4 C -0.140 4.140 5 C 0.184 3.816 6 H 0.058 0.942 7 N -0.747 5.747 8 C -0.246 4.246 9 H 0.091 0.909 10 C 0.006 3.994 11 N -0.932 5.932 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.277 1.277 16 C -0.156 4.156 17 C 0.083 3.917 18 N -0.595 5.595 19 C 0.570 3.430 20 O -0.526 6.526 21 C -0.204 4.204 22 C 0.202 3.798 23 N -0.484 5.484 24 C 0.286 3.714 25 C -0.075 4.075 26 C 0.076 3.924 27 N -0.198 5.198 28 N 0.009 4.991 29 N -0.384 5.384 30 C 0.100 3.900 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.195 0.805 43 H 0.162 0.838 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.692 -2.420 -19.985 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 H 0.095 0.905 4 C -0.179 4.179 5 C 0.075 3.925 6 H 0.076 0.924 7 N -0.389 5.389 8 C -0.376 4.376 9 H 0.109 0.891 10 C -0.190 4.190 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.203 1.203 16 C -0.197 4.197 17 C -0.040 4.040 18 N -0.327 5.327 19 C 0.357 3.643 20 O -0.404 6.404 21 C -0.213 4.213 22 C 0.029 3.971 23 N -0.198 5.198 24 C 0.043 3.957 25 C -0.201 4.201 26 C 0.045 3.955 27 N -0.078 5.078 28 N 0.027 4.973 29 N -0.180 5.180 30 C -0.041 4.041 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.194 0.806 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.211 0.789 43 H 0.179 0.821 44 H 0.104 0.896 45 H 0.118 0.882 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.742 -2.926 -21.356 23.655 hybrid contribution -0.578 -0.582 1.583 1.783 sum -10.321 -3.508 -19.773 22.578 Atomic orbital electron populations 1.22195 0.92679 1.03703 1.00960 1.21333 0.95495 0.95361 0.83105 0.90531 1.22367 0.97504 1.01120 0.96908 1.20118 0.90766 0.95438 0.86224 0.92363 1.42787 1.13239 1.54997 1.27852 1.19050 0.87484 1.23639 1.07424 0.89137 1.24677 0.96067 1.00068 0.98164 1.69698 1.15166 1.46991 1.26109 0.86568 0.80515 0.81570 0.79950 1.21107 1.21774 1.20279 1.22719 1.02622 0.99755 0.94555 1.22506 0.79481 1.01943 1.00071 1.48108 1.07473 1.57045 1.20113 1.17733 0.85700 0.79474 0.81421 1.90858 1.16594 1.56802 1.76131 1.20866 1.01602 1.03377 0.95443 1.23655 0.89042 0.86812 0.97603 1.66765 1.30224 1.25823 0.97021 1.19603 0.94068 0.93361 0.88715 1.20347 1.02081 1.04369 0.93279 1.20958 0.94186 0.92451 0.87889 1.74869 1.16913 1.10333 1.05692 1.81760 0.98487 1.05913 1.11104 1.50004 1.30595 1.32697 1.04731 1.22123 0.88493 0.88430 1.05012 0.93423 0.90712 0.91625 0.91717 0.90265 0.80584 0.92999 0.89612 0.91992 0.89237 0.90514 0.78891 0.82056 0.89593 0.88180 0.88316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 7.62 37.15 0.28 -1.38 16 2 C 0.15 1.80 3.48 -67.60 -0.24 1.56 16 3 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 4 C -0.14 -1.93 4.84 -26.61 -0.13 -2.06 16 5 C 0.18 3.02 2.73 -67.89 -0.19 2.83 16 6 H 0.06 1.00 8.08 -51.93 -0.42 0.58 16 7 N -0.75 -15.98 4.92 -53.38 -0.26 -16.25 16 8 C -0.25 -6.44 10.41 -15.06 -0.16 -6.59 16 9 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 10 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 11 N -0.93 -28.17 13.97 55.49 0.78 -27.39 16 12 Si 0.88 21.18 27.74 -169.99 -4.71 16.47 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 15 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 16 C -0.16 -2.13 5.32 -26.61 -0.14 -2.27 16 17 C 0.08 0.88 5.53 -3.71 -0.02 0.86 16 18 N -0.59 -6.83 2.97 -166.37 -0.49 -7.32 16 19 C 0.57 6.83 7.21 -12.39 -0.09 6.74 16 20 O -0.53 -7.41 12.43 5.30 0.07 -7.34 16 21 C -0.20 -2.17 5.45 -104.87 -0.57 -2.74 16 22 C 0.20 2.05 8.56 -17.09 -0.15 1.91 16 23 N -0.48 -5.37 10.37 -12.03 -0.12 -5.49 16 24 C 0.29 3.26 8.05 -155.92 -1.26 2.01 16 25 C -0.07 -0.88 7.27 -84.74 -0.62 -1.49 16 26 C 0.08 0.80 9.78 -38.52 -0.38 0.42 16 27 N -0.20 -2.45 12.40 32.17 0.40 -2.05 16 28 N 0.01 0.10 13.71 60.35 0.83 0.93 16 29 N -0.38 -3.84 4.10 -67.18 -0.28 -4.11 16 30 C 0.10 0.55 11.54 59.85 0.69 1.24 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.95 6.69 -51.93 -0.35 0.61 16 33 H 0.06 0.88 6.82 -51.93 -0.35 0.52 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.36 7.75 5.66 -40.82 -0.23 7.52 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 0.84 7.62 -51.93 -0.40 0.44 16 40 H 0.09 0.83 3.52 -51.93 -0.18 0.64 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.19 1.77 4.98 -52.49 -0.26 1.51 16 43 H 0.16 1.49 8.02 -52.49 -0.42 1.07 16 44 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.34 8.14 -51.92 -0.42 -0.08 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -32.54 367.67 -7.32 -39.86 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.01 Total: 6.04 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: -3.05 Total: 1.11 kcal Atomic # 7 Polarization: -62.53 SS G_CDS: 0.84 Total: -61.69 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: 0.07 Total: -7.34 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.71 Total: 16.47 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.54 -7.32 -39.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044691106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.923 kcal (2) G-P(sol) polarization free energy of solvation -32.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds