Wall clock time and date at job start Wed Apr 1 2020 03:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.58866 * 2 1 4 4 C 1.53167 * 109.58757 * 239.56997 * 2 1 3 5 5 C 1.53039 * 109.32714 * 185.57285 * 4 2 1 6 6 H 1.09002 * 109.46387 * 181.38533 * 5 4 2 7 7 N 1.46500 * 109.45984 * 301.35640 * 5 4 2 8 8 C 1.36942 * 120.00360 * 205.02795 * 7 5 4 9 9 H 1.08003 * 119.99481 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00431 * 179.97438 * 8 7 5 11 11 N 1.31621 * 119.99566 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 120.00202 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46924 * 0.02562 * 12 10 8 14 14 H 1.48495 * 109.47217 * 239.99970 * 12 10 8 15 15 H 1.48501 * 109.47059 * 120.00122 * 12 10 8 16 16 C 1.53046 * 109.52947 * 61.36641 * 5 4 2 17 17 C 1.53182 * 109.31277 * 298.64378 * 16 5 4 18 18 N 1.46919 * 109.58931 * 120.28626 * 2 1 3 19 19 C 1.34775 * 120.63232 * 353.41719 * 18 2 1 20 20 O 1.21574 * 119.99946 * 357.62216 * 19 18 2 21 21 C 1.47723 * 120.00580 * 177.62568 * 19 18 2 22 22 C 1.40112 * 120.35062 * 33.13367 * 21 19 18 23 23 N 1.31260 * 121.14982 * 179.97438 * 22 21 19 24 24 C 1.32710 * 121.80439 * 0.02562 * 23 22 21 25 25 C 1.40792 * 120.67781 * 0.02562 * 24 23 22 26 26 C 1.39425 * 120.35259 * 212.86633 * 21 19 18 27 27 N 1.35329 * 107.75835 * 180.02562 * 25 24 23 28 28 N 1.28669 * 109.99885 * 359.97438 * 27 25 24 29 29 N 1.37112 * 133.41079 * 179.97438 * 24 23 22 30 30 C 1.46504 * 126.58943 * 359.97438 * 29 24 23 31 31 H 1.08998 * 109.46820 * 306.42485 * 1 2 3 32 32 H 1.08996 * 109.47047 * 66.42039 * 1 2 3 33 33 H 1.08995 * 109.47175 * 186.42546 * 1 2 3 34 34 H 1.08993 * 109.48022 * 65.62073 * 4 2 1 35 35 H 1.08995 * 109.50033 * 305.52844 * 4 2 1 36 36 H 0.96998 * 120.00038 * 25.02494 * 7 5 4 37 37 H 0.96995 * 120.00272 * 0.02562 * 11 10 8 38 38 H 1.09004 * 109.49095 * 58.59582 * 16 5 4 39 39 H 1.09001 * 109.49267 * 178.68951 * 16 5 4 40 40 H 1.09003 * 109.58777 * 174.42203 * 17 16 5 41 41 H 1.09002 * 109.58979 * 294.70324 * 17 16 5 42 42 H 1.07999 * 119.42621 * 0.02562 * 22 21 19 43 43 H 1.08002 * 120.95134 * 359.96438 * 26 21 19 44 44 H 1.08997 * 109.47424 * 89.99846 * 30 29 24 45 45 H 1.09005 * 109.46698 * 209.99495 * 30 29 24 46 46 H 1.08992 * 109.46878 * 329.99386 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7309 -1.2443 5 6 3.5674 -0.8494 -1.1692 6 1 3.9376 -1.3475 -2.0654 7 7 4.1570 0.4884 -1.0756 8 6 5.4411 0.7021 -1.5007 9 1 6.0191 -0.1157 -1.9054 10 6 5.9996 1.9698 -1.4126 11 7 5.2950 2.9664 -0.9199 12 14 7.7515 2.2611 -1.9918 13 1 8.3231 0.9879 -2.4991 14 1 8.5722 2.7554 -0.8572 15 1 7.7515 3.2716 -3.0799 16 6 3.9569 -1.6657 0.0655 17 6 3.4651 -0.9454 1.3248 18 7 2.0226 -0.6981 1.1952 19 6 1.1675 -1.1043 2.1545 20 8 -0.0186 -0.8561 2.0563 21 6 1.6713 -1.8511 3.3252 22 6 2.9462 -1.5832 3.8408 23 7 3.4093 -2.2369 4.8806 24 6 2.6975 -3.1770 5.4894 25 6 1.4071 -3.5087 5.0345 26 6 0.8810 -2.8262 3.9323 27 7 0.9256 -4.4871 5.8360 28 7 1.7952 -4.7864 6.7359 29 7 2.9371 -3.9910 6.5665 30 6 4.1528 -4.0232 7.3835 31 1 -0.3633 0.6102 0.8269 32 1 -0.3633 0.4111 -0.9418 33 1 -0.3633 -1.0212 0.1150 34 1 1.7657 -0.1693 -2.1362 35 1 1.6030 -1.7268 -1.2889 36 1 3.6378 1.2229 -0.7126 37 1 4.3858 2.8150 -0.6181 38 1 3.4982 -2.6528 0.0084 39 1 5.0412 -1.7695 0.1057 40 1 3.6519 -1.5691 2.1990 41 1 3.9922 0.0026 1.4329 42 1 3.5583 -0.8250 3.3751 43 1 -0.1076 -3.0510 3.5600 44 1 4.0527 -3.3216 8.2116 45 1 4.3004 -5.0294 7.7757 46 1 5.0096 -3.7426 6.7710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044691109.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:57 Heat of formation + Delta-G solvation = 149.660757 kcal Electronic energy + Delta-G solvation = -30684.977213 eV Core-core repulsion = 26614.110007 eV Total energy + Delta-G solvation = -4070.867205 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.68053 -40.82003 -38.76410 -37.61483 -35.22237 -34.59129 -33.33165 -32.34279 -32.12574 -30.60789 -28.95789 -28.06717 -27.16853 -25.50748 -24.90887 -23.71578 -23.43996 -22.05497 -21.76677 -20.63147 -19.16416 -18.63837 -18.02902 -17.39541 -16.81253 -16.68120 -16.19543 -15.78116 -15.52890 -14.92288 -14.67845 -14.24961 -14.05987 -13.97055 -13.74615 -13.49017 -13.43760 -13.34469 -13.24416 -13.17415 -12.84109 -12.74431 -12.19180 -12.05527 -11.97719 -11.62881 -11.38181 -11.25549 -10.88337 -10.80851 -10.60199 -10.40874 -10.29693 -10.09247 -10.02606 -9.50550 -9.29617 -9.23390 -9.04217 -8.97026 -8.38157 -7.12408 -6.16826 -3.18337 -0.12079 0.38556 1.43457 1.74083 2.57658 2.84541 3.30074 3.45879 3.47502 3.53078 3.62379 3.77583 3.93244 4.18469 4.31165 4.42756 4.60403 4.69514 4.83299 4.97773 5.00743 5.05179 5.13569 5.21069 5.30269 5.37615 5.46431 5.46766 5.57273 5.59523 5.69786 5.74198 5.82569 5.89650 5.99253 6.03438 6.14058 6.23964 6.33072 6.41694 6.57934 6.59146 6.66665 6.86476 7.14876 7.45958 7.46919 7.75365 8.12968 8.68051 9.13750 10.00140 10.14922 11.30889 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013211 B = 0.003098 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.963386 B = 9034.522799 C =10549.569328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.148 3.852 3 H 0.079 0.921 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.053 0.947 7 N -0.733 5.733 8 C -0.331 4.331 9 H 0.065 0.935 10 C -0.043 4.043 11 N -0.943 5.943 12 Si 1.083 2.917 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.294 1.294 16 C -0.148 4.148 17 C 0.086 3.914 18 N -0.588 5.588 19 C 0.566 3.434 20 O -0.530 6.530 21 C -0.200 4.200 22 C 0.197 3.803 23 N -0.486 5.486 24 C 0.286 3.714 25 C -0.075 4.075 26 C 0.075 3.925 27 N -0.198 5.198 28 N 0.007 4.993 29 N -0.386 5.386 30 C 0.101 3.899 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.366 0.634 37 H 0.255 0.745 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.199 0.801 43 H 0.161 0.839 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.014 -13.077 11.878 18.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.046 3.954 3 H 0.097 0.903 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.071 0.929 7 N -0.377 5.377 8 C -0.462 4.462 9 H 0.083 0.917 10 C -0.241 4.241 11 N -0.588 5.588 12 Si 0.914 3.086 13 H -0.222 1.222 14 H -0.220 1.220 15 H -0.221 1.221 16 C -0.189 4.189 17 C -0.036 4.036 18 N -0.320 5.320 19 C 0.353 3.647 20 O -0.409 6.409 21 C -0.209 4.209 22 C 0.025 3.975 23 N -0.200 5.200 24 C 0.042 3.958 25 C -0.201 4.201 26 C 0.044 3.956 27 N -0.078 5.078 28 N 0.026 4.974 29 N -0.182 5.182 30 C -0.040 4.040 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.201 0.799 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.215 0.785 43 H 0.179 0.821 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.033 -12.971 12.845 18.695 hybrid contribution -1.228 -0.493 -0.443 1.395 sum -5.261 -13.464 12.402 19.046 Atomic orbital electron populations 1.22214 0.92846 1.03441 1.00820 1.21294 0.95138 0.95734 0.83271 0.90320 1.22272 0.97416 1.00487 0.97246 1.20128 0.90224 0.87706 0.95083 0.92913 1.42526 1.14100 1.04702 1.76377 1.20083 0.90425 0.96999 1.38729 0.91690 1.25712 1.06028 0.91555 1.00780 1.70840 1.10995 1.32385 1.44601 0.83176 0.74489 0.74783 0.76131 1.22168 1.22049 1.22090 1.22503 1.01680 0.97999 0.96764 1.22573 0.79356 1.02158 0.99514 1.48065 1.07652 1.56375 1.19895 1.17740 0.85897 0.79258 0.81780 1.90857 1.15812 1.56814 1.77373 1.20871 0.96936 1.02061 1.01035 1.23861 0.91569 0.94805 0.87264 1.66774 1.35602 1.07567 1.10059 1.19603 0.92180 0.93262 0.90728 1.20340 0.95260 1.02225 1.02253 1.20942 0.98900 0.87957 0.87758 1.74857 1.21312 1.10379 1.01271 1.81744 0.88505 1.11097 1.16047 1.49978 1.16071 1.28596 1.23524 1.22104 0.81936 1.04917 0.95028 0.90841 0.93728 0.91598 0.90590 0.91791 0.79910 0.93396 0.93055 0.90504 0.89403 0.89101 0.78499 0.82101 0.89722 0.88349 0.88205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 7.60 37.16 0.28 -1.66 16 2 C 0.15 2.23 3.19 -67.62 -0.22 2.01 16 3 H 0.08 1.32 6.65 -51.93 -0.35 0.98 16 4 C -0.14 -2.05 5.07 -26.62 -0.13 -2.18 16 5 C 0.18 3.15 3.10 -67.89 -0.21 2.94 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.73 -16.16 4.31 -53.38 -0.23 -16.39 16 8 C -0.33 -8.49 9.93 -15.06 -0.15 -8.63 16 9 H 0.07 1.66 7.83 -52.48 -0.41 1.25 16 10 C -0.04 -1.16 5.50 -17.43 -0.10 -1.26 16 11 N -0.94 -27.42 13.70 55.49 0.76 -26.66 16 12 Si 1.08 24.70 29.92 -169.99 -5.09 19.62 16 13 H -0.30 -6.33 7.11 56.52 0.40 -5.93 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 C -0.15 -2.25 5.78 -26.61 -0.15 -2.41 16 17 C 0.09 1.19 4.67 -3.71 -0.02 1.17 16 18 N -0.59 -8.30 2.97 -166.39 -0.49 -8.80 16 19 C 0.57 7.92 7.31 -12.39 -0.09 7.83 16 20 O -0.53 -8.43 12.29 5.30 0.07 -8.36 16 21 C -0.20 -2.44 5.53 -104.88 -0.58 -3.02 16 22 C 0.20 2.27 8.60 -17.09 -0.15 2.13 16 23 N -0.49 -5.88 10.37 -12.63 -0.13 -6.01 16 24 C 0.29 3.53 8.05 -155.94 -1.26 2.27 16 25 C -0.07 -0.96 7.27 -84.73 -0.62 -1.57 16 26 C 0.08 0.89 9.78 -38.52 -0.38 0.51 16 27 N -0.20 -2.62 12.40 32.17 0.40 -2.22 16 28 N 0.01 0.09 13.71 60.35 0.83 0.92 16 29 N -0.39 -4.13 4.10 -67.18 -0.28 -4.41 16 30 C 0.10 0.61 11.54 59.85 0.69 1.30 16 31 H 0.07 1.13 6.70 -51.93 -0.35 0.78 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.97 6.78 -51.93 -0.35 0.62 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.37 8.40 4.90 -40.82 -0.20 8.20 16 37 H 0.25 7.26 6.77 -40.82 -0.28 6.98 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.09 1.03 3.52 -53.29 -0.19 0.84 16 41 H 0.09 1.45 7.74 -51.93 -0.40 1.05 16 42 H 0.20 2.06 5.32 -52.49 -0.28 1.78 16 43 H 0.16 1.71 8.01 -52.49 -0.42 1.29 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -31.51 365.44 -7.55 -39.06 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.82 Total: 8.31 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -3.07 Total: -0.57 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: 0.86 Total: -63.56 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.07 Total: -8.36 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.09 Total: 19.62 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.51 -7.55 -39.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044691109.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.722 kcal (2) G-P(sol) polarization free energy of solvation -31.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds