Wall clock time and date at job start Wed Apr 1 2020 03:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.58567 * 2 1 4 4 C 1.53194 * 109.59008 * 239.57065 * 2 1 3 5 5 C 1.53032 * 109.31452 * 185.57883 * 4 2 1 6 6 H 1.08996 * 109.45184 * 301.35271 * 5 4 2 7 7 N 1.46497 * 109.46133 * 181.38270 * 5 4 2 8 8 C 1.36944 * 119.99939 * 154.92812 * 7 5 4 9 9 H 1.07990 * 120.00197 * 0.02562 * 8 7 5 10 10 C 1.38814 * 119.99767 * 180.02562 * 8 7 5 11 11 N 1.31624 * 120.00332 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00000 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47439 * 59.99680 * 12 10 8 14 14 H 1.48497 * 109.47272 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46982 * 299.99971 * 12 10 8 16 16 C 1.53042 * 109.54043 * 61.36718 * 5 4 2 17 17 C 1.53196 * 109.31158 * 298.63295 * 16 5 4 18 18 N 1.46929 * 109.58569 * 120.27981 * 2 1 3 19 19 C 1.34775 * 120.63289 * 353.42352 * 18 2 1 20 20 O 1.21571 * 119.99637 * 6.20524 * 19 18 2 21 21 C 1.47722 * 120.00194 * 186.21273 * 19 18 2 22 22 C 1.40116 * 120.35161 * 28.69797 * 21 19 18 23 23 N 1.31261 * 121.15052 * 180.02562 * 22 21 19 24 24 C 1.32715 * 121.79975 * 359.97438 * 23 22 21 25 25 C 1.40786 * 120.68255 * 359.97438 * 24 23 22 26 26 C 1.39426 * 120.35243 * 208.42114 * 21 19 18 27 27 N 1.35327 * 107.75877 * 180.02562 * 25 24 23 28 28 N 1.28669 * 109.99913 * 0.02562 * 27 25 24 29 29 N 1.37120 * 133.40740 * 180.02562 * 24 23 22 30 30 C 1.46497 * 126.58715 * 359.97438 * 29 24 23 31 31 H 1.08998 * 109.47171 * 303.29344 * 1 2 3 32 32 H 1.09003 * 109.47227 * 63.29625 * 1 2 3 33 33 H 1.09008 * 109.46969 * 183.29210 * 1 2 3 34 34 H 1.09004 * 109.49709 * 305.53027 * 4 2 1 35 35 H 1.08995 * 109.49405 * 65.62018 * 4 2 1 36 36 H 0.97005 * 120.00198 * 334.93099 * 7 5 4 37 37 H 0.96994 * 120.00235 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.50092 * 178.68428 * 16 5 4 39 39 H 1.08994 * 109.50209 * 58.58173 * 16 5 4 40 40 H 1.09001 * 109.58642 * 294.84894 * 17 16 5 41 41 H 1.08997 * 109.59181 * 174.42362 * 17 16 5 42 42 H 1.08001 * 119.42913 * 359.97438 * 22 21 19 43 43 H 1.08004 * 120.95005 * 359.97438 * 26 21 19 44 44 H 1.09001 * 109.47382 * 90.00419 * 30 29 24 45 45 H 1.09007 * 109.47391 * 210.00326 * 30 29 24 46 46 H 1.09004 * 109.47772 * 330.00276 * 30 29 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5674 -0.8495 -1.1690 6 1 4.0059 0.1460 -1.0993 7 7 4.0652 -1.5188 -2.3733 8 6 5.3493 -1.3012 -2.7964 9 1 5.9952 -0.6365 -2.2421 10 6 5.8208 -1.9351 -3.9379 11 7 5.0335 -2.7448 -4.6138 12 14 7.5726 -1.6388 -4.5147 13 1 8.5213 -2.0598 -3.4527 14 1 7.8276 -2.4262 -5.7476 15 1 7.7613 -0.1942 -4.8026 16 6 3.9569 -1.6657 0.0657 17 6 3.4650 -0.9453 1.3250 18 7 2.0225 -0.6980 1.1954 19 6 1.1673 -1.1042 2.1546 20 8 -0.0317 -0.9962 1.9854 21 6 1.6869 -1.6806 3.4116 22 6 2.9426 -1.2967 3.9006 23 7 3.4197 -1.7992 5.0155 24 6 2.7403 -2.6885 5.7288 25 6 1.4702 -3.1273 5.3087 26 6 0.9305 -2.6079 4.1271 27 7 1.0203 -4.0214 6.2195 28 7 1.8904 -4.1719 7.1554 29 7 2.9999 -3.3544 6.8990 30 6 4.2050 -3.2341 7.7232 31 1 -0.3633 0.5641 0.8590 32 1 -0.3634 0.4618 -0.9181 33 1 -0.3633 -1.0261 0.0590 34 1 1.6030 -1.7270 -1.2891 35 1 1.7660 -0.1696 -2.1365 36 1 3.4852 -2.1162 -2.8710 37 1 5.3630 -3.1880 -5.4111 38 1 5.0412 -1.7695 0.1060 39 1 3.4983 -2.6528 0.0088 40 1 3.9903 0.0038 1.4318 41 1 3.6518 -1.5689 2.1993 42 1 3.5286 -0.5755 3.3503 43 1 -0.0428 -2.9191 3.7772 44 1 4.0646 -2.4421 8.4589 45 1 4.3901 -4.1779 8.2363 46 1 5.0573 -2.9928 7.0879 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044691112.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:00 Heat of formation + Delta-G solvation = 142.759930 kcal Electronic energy + Delta-G solvation = -30095.133354 eV Core-core repulsion = 26023.966906 eV Total energy + Delta-G solvation = -4071.166448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.72661 -40.84843 -38.77552 -37.49686 -35.26897 -34.66344 -33.36837 -32.35320 -32.00262 -30.68421 -29.35108 -28.10861 -27.15736 -25.52889 -24.86642 -24.03541 -22.96056 -21.96085 -21.82127 -20.45399 -19.62986 -18.78489 -18.09768 -17.18787 -16.85523 -16.77182 -16.26481 -15.75523 -15.46032 -14.96895 -14.63354 -14.22649 -14.12826 -13.93235 -13.77970 -13.50716 -13.46034 -13.30736 -13.26589 -13.17967 -12.82212 -12.60604 -12.26069 -12.11766 -11.93637 -11.62399 -11.49057 -11.28804 -10.94384 -10.87745 -10.86730 -10.50496 -10.31464 -10.15823 -9.91471 -9.76004 -9.57556 -9.31328 -9.11189 -8.94599 -8.54975 -7.03267 -5.82083 -3.11761 -0.16447 0.31336 1.38891 1.69804 2.50794 2.75430 3.26485 3.38413 3.39535 3.44135 3.45480 3.72405 3.87863 4.12084 4.24073 4.35555 4.52764 4.64706 4.76006 4.90831 4.94963 4.99753 5.09006 5.17828 5.22112 5.33786 5.39129 5.41608 5.45998 5.56155 5.68122 5.73162 5.83566 5.94828 5.97008 6.07138 6.19505 6.27724 6.38120 6.40960 6.47581 6.68596 6.82070 6.97380 7.07924 7.34186 7.42763 7.63018 8.04304 8.35962 9.47199 10.04310 10.38592 11.40252 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013160 B = 0.002695 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.137358 B =10385.942111 C =11845.866945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.149 3.851 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.723 5.723 8 C -0.242 4.242 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 C -0.151 4.151 17 C 0.086 3.914 18 N -0.594 5.594 19 C 0.569 3.431 20 O -0.526 6.526 21 C -0.204 4.204 22 C 0.200 3.800 23 N -0.488 5.488 24 C 0.286 3.714 25 C -0.075 4.075 26 C 0.079 3.921 27 N -0.197 5.197 28 N 0.008 4.992 29 N -0.385 5.385 30 C 0.101 3.899 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.078 0.922 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.193 0.807 43 H 0.163 0.837 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.598 3.582 22.301 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.093 0.907 4 C -0.175 4.175 5 C 0.068 3.932 6 H 0.067 0.933 7 N -0.363 5.363 8 C -0.373 4.373 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.212 1.212 16 C -0.193 4.193 17 C -0.037 4.037 18 N -0.327 5.327 19 C 0.356 3.644 20 O -0.404 6.404 21 C -0.213 4.213 22 C 0.027 3.973 23 N -0.202 5.202 24 C 0.043 3.957 25 C -0.200 4.200 26 C 0.048 3.952 27 N -0.077 5.077 28 N 0.027 4.973 29 N -0.181 5.181 30 C -0.040 4.040 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.218 0.782 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.210 0.790 43 H 0.180 0.820 44 H 0.103 0.897 45 H 0.117 0.883 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.763 2.853 23.561 24.206 hybrid contribution 0.890 0.185 -1.303 1.589 sum -3.873 3.039 22.258 22.796 Atomic orbital electron populations 1.22230 0.92671 1.03809 1.00674 1.21387 0.95566 0.95033 0.83373 0.90660 1.22314 0.97545 1.01101 0.96535 1.20166 0.90935 0.94980 0.87077 0.93311 1.42423 1.12970 1.54210 1.26735 1.19174 0.89140 1.22357 1.06654 0.91185 1.24755 0.98143 0.99754 0.98169 1.69649 1.35475 1.33289 1.19541 0.86287 0.84559 0.77486 0.77945 1.21267 1.21718 1.21239 1.22709 1.01893 1.00133 0.94516 1.22554 0.79672 1.00905 1.00594 1.48084 1.07530 1.56983 1.20053 1.17738 0.86091 0.78225 0.82351 1.90868 1.14886 1.55387 1.79303 1.20866 0.97510 1.03441 0.99482 1.23727 0.91096 0.94343 0.88135 1.66738 1.35181 1.10935 1.07319 1.19584 0.92303 0.94315 0.89505 1.20353 0.95985 1.03539 1.00171 1.21001 0.98557 0.88258 0.87378 1.74872 1.20670 1.12519 0.99616 1.81762 0.89599 1.09285 1.16628 1.49993 1.17594 1.32899 1.17654 1.22105 0.82317 1.04588 0.94984 0.91335 0.93620 0.90973 0.91644 0.90426 0.78222 0.93396 0.90380 0.92043 0.90467 0.89484 0.79023 0.81954 0.89741 0.88302 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.59 37.15 0.28 -1.47 16 2 C 0.15 1.89 3.49 -67.60 -0.24 1.66 16 3 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.14 -2.07 4.84 -26.61 -0.13 -2.20 16 5 C 0.18 3.15 2.73 -67.89 -0.19 2.97 16 6 H 0.05 0.86 8.08 -51.93 -0.42 0.45 16 7 N -0.72 -16.98 5.12 -53.39 -0.27 -17.25 16 8 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 9 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 10 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 11 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 12 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 13 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 16 C -0.15 -2.30 5.66 -26.61 -0.15 -2.45 16 17 C 0.09 0.94 4.69 -3.71 -0.02 0.92 16 18 N -0.59 -7.12 2.97 -166.36 -0.49 -7.62 16 19 C 0.57 7.08 7.38 -12.39 -0.09 6.99 16 20 O -0.53 -7.70 12.12 5.30 0.06 -7.63 16 21 C -0.20 -2.22 5.48 -104.88 -0.58 -2.79 16 22 C 0.20 1.91 8.58 -17.09 -0.15 1.76 16 23 N -0.49 -5.18 10.37 -12.03 -0.12 -5.30 16 24 C 0.29 3.27 8.05 -155.93 -1.26 2.02 16 25 C -0.07 -0.90 7.27 -84.74 -0.62 -1.52 16 26 C 0.08 0.88 9.76 -38.52 -0.38 0.50 16 27 N -0.20 -2.52 12.40 32.17 0.40 -2.12 16 28 N 0.01 0.10 13.71 60.35 0.83 0.93 16 29 N -0.39 -3.86 4.10 -67.18 -0.28 -4.14 16 30 C 0.10 0.53 11.54 59.85 0.69 1.22 16 31 H 0.07 0.91 6.75 -51.93 -0.35 0.56 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.04 6.75 -51.92 -0.35 0.69 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.38 9.81 7.80 -40.82 -0.32 9.49 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 0.69 8.00 -51.93 -0.42 0.28 16 41 H 0.09 0.83 4.09 -51.93 -0.21 0.62 16 42 H 0.19 1.40 5.31 -52.49 -0.28 1.12 16 43 H 0.16 1.65 7.95 -52.48 -0.42 1.24 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 0.34 8.14 -51.92 -0.42 -0.08 16 46 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 371.37 15.07 5.60 5.60 Total: -1.00 -32.37 371.37 -7.74 -40.12 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -6.11 Total: 6.82 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.05 Total: 0.68 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.78 Total: -62.18 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.06 Total: -7.63 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.37 -7.74 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044691112.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.878 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds