Wall clock time and date at job start Wed Apr 1 2020 03:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.58289 * 2 1 4 4 C 1.53188 * 109.70037 * 239.64312 * 2 1 3 5 5 C 1.53041 * 109.31034 * 185.50638 * 4 2 1 6 6 H 1.09010 * 109.45936 * 181.37418 * 5 4 2 7 7 N 1.46502 * 109.46081 * 301.34473 * 5 4 2 8 8 C 1.36933 * 119.99976 * 204.99913 * 7 5 4 9 9 H 1.07999 * 120.00357 * 359.97438 * 8 7 5 10 10 C 1.38822 * 119.99994 * 180.02562 * 8 7 5 11 11 N 1.31613 * 119.99731 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99927 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46883 * 89.99946 * 12 10 8 14 14 H 1.48497 * 109.46858 * 209.99950 * 12 10 8 15 15 H 1.48504 * 109.47162 * 329.99855 * 12 10 8 16 16 C 1.53036 * 109.53872 * 61.36998 * 5 4 2 17 17 C 1.53192 * 109.31016 * 298.63046 * 16 5 4 18 18 N 1.46923 * 109.58439 * 120.28328 * 2 1 3 19 19 C 1.34770 * 120.63640 * 353.55759 * 18 2 1 20 20 O 1.21543 * 119.99673 * 355.93682 * 19 18 2 21 21 C 1.47876 * 120.00528 * 175.92779 * 19 18 2 22 22 C 1.39460 * 121.10811 * 34.27489 * 21 19 18 23 23 C 1.38620 * 119.37377 * 179.97438 * 22 21 19 24 24 N 1.31588 * 121.63464 * 0.02562 * 23 22 21 25 25 C 1.32210 * 121.86544 * 359.97438 * 24 23 22 26 26 C 1.40865 * 121.11834 * 213.99665 * 21 19 18 27 27 N 1.34388 * 135.14820 * 0.02562 * 26 21 19 28 28 N 1.28691 * 109.15043 * 180.02562 * 27 26 21 29 29 N 1.28790 * 111.75618 * 359.46621 * 28 27 26 30 30 C 1.46507 * 125.86466 * 179.97438 * 29 28 27 31 31 H 1.09003 * 109.47101 * 306.73179 * 1 2 3 32 32 H 1.09000 * 109.47496 * 66.73233 * 1 2 3 33 33 H 1.09003 * 109.47357 * 186.74001 * 1 2 3 34 34 H 1.08997 * 109.50358 * 305.46041 * 4 2 1 35 35 H 1.08999 * 109.49797 * 65.52772 * 4 2 1 36 36 H 0.96998 * 120.00005 * 25.00076 * 7 5 4 37 37 H 0.97001 * 120.00019 * 180.02562 * 11 10 8 38 38 H 1.09006 * 109.50047 * 178.68539 * 16 5 4 39 39 H 1.08994 * 109.49991 * 58.58082 * 16 5 4 40 40 H 1.08997 * 109.59245 * 294.84667 * 17 16 5 41 41 H 1.09002 * 109.58718 * 174.42044 * 17 16 5 42 42 H 1.07997 * 120.31108 * 359.95712 * 22 21 19 43 43 H 1.07994 * 119.18274 * 180.02562 * 23 22 21 44 44 H 1.08993 * 109.47089 * 270.73948 * 30 29 28 45 45 H 1.08997 * 109.47045 * 30.74684 * 30 29 28 46 46 H 1.09000 * 109.46657 * 150.74442 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0464 -0.7289 -1.2445 5 6 3.5705 -0.8443 -1.1674 6 1 3.9428 -1.3410 -2.0635 7 7 4.1572 0.4947 -1.0721 8 6 5.4416 0.7110 -1.4947 9 1 6.0222 -0.1055 -1.8979 10 6 5.9977 1.9797 -1.4040 11 7 5.2903 2.9747 -0.9122 12 14 7.7496 2.2750 -1.9812 13 1 7.7406 2.6525 -3.4173 14 1 8.3548 3.3725 -1.1846 15 1 8.5461 1.0348 -1.8003 16 6 3.9601 -1.6608 0.0669 17 6 3.4654 -0.9425 1.3263 18 7 2.0224 -0.6980 1.1953 19 6 1.1670 -1.1067 2.1532 20 8 -0.0145 -0.8344 2.0692 21 6 1.6658 -1.8866 3.3063 22 6 2.9317 -1.6512 3.8420 23 6 3.3630 -2.4032 4.9237 24 7 2.6070 -3.3372 5.4602 25 6 1.3983 -3.6077 4.9980 26 6 0.8761 -2.8883 3.9041 27 7 -0.3521 -3.3890 3.6876 28 7 -0.5877 -4.3163 4.5482 29 7 0.4103 -4.4954 5.3423 30 6 0.4740 -5.4697 6.4346 31 1 -0.3633 0.6146 0.8236 32 1 -0.3634 0.4059 -0.9441 33 1 -0.3634 -1.0206 0.1206 34 1 1.6079 -1.7257 -1.2906 35 1 1.7683 -0.1675 -2.1365 36 1 3.6359 1.2280 -0.7097 37 1 5.6788 3.8613 -0.8491 38 1 5.0446 -1.7624 0.1085 39 1 3.5036 -2.6488 0.0086 40 1 3.9886 0.0076 1.4346 41 1 3.6524 -1.5666 2.2002 42 1 3.5701 -0.8903 3.4179 43 1 4.3436 -2.2180 5.3364 44 1 0.0892 -5.0168 7.3483 45 1 -0.1284 -6.3415 6.1795 46 1 1.5088 -5.7755 6.5887 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044719659.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:07 Heat of formation + Delta-G solvation = 155.629687 kcal Electronic energy + Delta-G solvation = -30956.357663 eV Core-core repulsion = 26885.749290 eV Total energy + Delta-G solvation = -4070.608373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.57766 -40.66763 -39.02917 -37.46174 -35.30917 -34.38251 -33.55001 -31.94968 -31.44275 -31.03403 -29.13742 -28.27074 -27.22212 -25.68377 -24.31006 -24.01179 -23.51672 -22.77705 -21.43392 -20.01971 -19.20979 -18.59278 -17.72968 -17.27042 -17.22613 -16.90038 -15.83461 -15.76109 -15.22963 -15.06544 -14.56637 -14.13514 -14.02419 -13.93567 -13.66552 -13.51349 -13.26862 -13.22973 -13.17242 -12.89310 -12.50036 -12.47230 -12.02768 -11.97002 -11.78822 -11.53218 -11.23711 -11.09501 -10.93957 -10.82498 -10.64841 -10.42865 -10.29774 -10.05175 -9.91236 -9.67218 -9.36566 -9.18207 -8.99402 -8.79621 -8.20952 -7.02995 -5.82922 -3.12006 -0.08946 0.65010 1.63894 2.00945 2.75014 2.99000 3.36854 3.38823 3.43476 3.44619 3.46112 3.97977 4.07116 4.28113 4.34861 4.53859 4.61366 4.73596 4.90361 4.93362 5.09062 5.23319 5.30697 5.32236 5.39663 5.48652 5.52495 5.57665 5.68395 5.74519 5.87431 5.89508 5.98681 6.06255 6.10941 6.16619 6.30558 6.38411 6.47343 6.57078 6.71700 6.75397 6.81832 7.02026 7.24063 7.61468 7.64949 7.99812 8.29670 8.35466 9.47072 10.03387 10.38595 11.39377 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017415 B = 0.003021 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.438822 B = 9265.743131 C =10226.919188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H 0.084 0.916 4 C -0.134 4.134 5 C 0.173 3.827 6 H 0.051 0.949 7 N -0.722 5.722 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.291 1.291 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.149 4.149 17 C 0.080 3.920 18 N -0.585 5.585 19 C 0.551 3.449 20 O -0.509 6.509 21 C -0.002 4.002 22 C -0.157 4.157 23 C 0.160 3.840 24 N -0.463 5.463 25 C 0.209 3.791 26 C 0.001 3.999 27 N -0.220 5.220 28 N -0.008 5.008 29 N -0.313 5.313 30 C 0.092 3.908 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.179 0.821 43 H 0.183 0.817 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.557 -14.744 13.962 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.046 3.954 3 H 0.102 0.898 4 C -0.173 4.173 5 C 0.063 3.937 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.218 1.218 14 H -0.219 1.219 15 H -0.208 1.208 16 C -0.190 4.190 17 C -0.042 4.042 18 N -0.318 5.318 19 C 0.338 3.662 20 O -0.386 6.386 21 C -0.018 4.018 22 C -0.180 4.180 23 C -0.012 4.012 24 N -0.176 5.176 25 C -0.033 4.033 26 C -0.128 4.128 27 N -0.095 5.095 28 N 0.010 4.990 29 N -0.114 5.114 30 C -0.048 4.048 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.196 0.804 43 H 0.200 0.800 44 H 0.108 0.892 45 H 0.121 0.879 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.243 -15.646 14.217 22.347 hybrid contribution 1.786 1.065 -0.438 2.125 sum -5.458 -14.581 13.779 20.791 Atomic orbital electron populations 1.22215 0.93039 1.03446 1.00751 1.21314 0.94985 0.96005 0.83128 0.89818 1.22252 0.97369 1.00341 0.97318 1.20195 0.90439 0.88110 0.94972 0.93088 1.42511 1.13759 1.04618 1.75532 1.19224 0.89704 0.94123 1.34005 0.91215 1.24719 0.98235 0.95904 1.01897 1.69647 1.36481 1.00605 1.51256 0.86234 0.84649 0.77374 0.78161 1.21814 1.21855 1.20812 1.22513 1.01456 0.97952 0.97101 1.22689 0.79242 1.02481 0.99750 1.48076 1.07656 1.56126 1.19894 1.17891 0.86100 0.80096 0.82155 1.90882 1.15832 1.55856 1.75987 1.19761 0.92547 0.93524 0.96011 1.22977 0.95120 1.02672 0.97254 1.22891 0.98450 0.88674 0.91195 1.66270 1.02439 1.18299 1.30614 1.19774 0.92190 0.95054 0.96252 1.20069 0.94297 1.00270 0.98196 1.75474 1.12831 1.05145 1.16015 1.78228 1.09740 1.12679 0.98348 1.46987 1.09665 1.28009 1.26764 1.22263 1.05798 0.90572 0.86199 0.90880 0.93725 0.91680 0.92049 0.90547 0.78125 0.93475 0.90614 0.93341 0.88920 0.88887 0.80416 0.80005 0.89178 0.87851 0.87939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 7.61 37.16 0.28 -1.94 16 2 C 0.15 2.45 3.19 -67.60 -0.22 2.24 16 3 H 0.08 1.54 6.64 -51.93 -0.34 1.20 16 4 C -0.13 -2.18 5.08 -26.61 -0.14 -2.32 16 5 C 0.17 3.14 3.10 -67.89 -0.21 2.93 16 6 H 0.05 0.96 8.08 -51.92 -0.42 0.54 16 7 N -0.72 -16.23 4.31 -53.38 -0.23 -16.46 16 8 C -0.24 -6.10 9.93 -15.06 -0.15 -6.25 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 11 N -0.93 -26.49 13.06 55.49 0.72 -25.77 16 12 Si 0.90 21.25 29.55 -169.99 -5.02 16.23 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 16 C -0.15 -2.33 5.78 -26.61 -0.15 -2.49 16 17 C 0.08 1.16 4.82 -3.70 -0.02 1.14 16 18 N -0.58 -9.20 2.97 -166.32 -0.49 -9.69 16 19 C 0.55 9.09 7.31 -12.32 -0.09 9.00 16 20 O -0.51 -9.69 12.36 5.33 0.07 -9.63 16 21 C 0.00 -0.03 5.56 -104.50 -0.58 -0.61 16 22 C -0.16 -1.66 7.58 -38.99 -0.30 -1.95 16 23 C 0.16 1.43 11.14 -17.52 -0.20 1.23 16 24 N -0.46 -5.10 10.35 -12.39 -0.13 -5.23 16 25 C 0.21 2.69 8.08 -156.21 -1.26 1.43 16 26 C 0.00 0.01 6.99 -84.72 -0.59 -0.58 16 27 N -0.22 -3.66 12.36 32.23 0.40 -3.26 16 28 N -0.01 -0.12 13.07 60.35 0.79 0.67 16 29 N -0.31 -3.53 3.80 -67.23 -0.26 -3.79 16 30 C 0.09 0.51 11.41 59.85 0.68 1.19 16 31 H 0.07 1.27 6.68 -51.93 -0.35 0.92 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.12 6.80 -51.93 -0.35 0.77 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.38 9.25 6.06 -40.82 -0.25 9.00 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.53 7.74 -51.93 -0.40 1.13 16 41 H 0.09 1.09 3.44 -52.62 -0.18 0.91 16 42 H 0.18 1.62 5.44 -52.49 -0.29 1.33 16 43 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -33.41 366.45 -7.59 -41.00 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.93 Total: 7.79 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -3.03 Total: 2.62 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.80 Total: -63.53 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.63 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.41 -7.59 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044719659.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.628 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds