Wall clock time and date at job start Wed Apr 1 2020 03:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.70289 * 2 1 4 4 C 1.53191 * 109.58930 * 120.35769 * 2 1 3 5 5 C 1.53035 * 109.31519 * 174.42494 * 4 2 1 6 6 H 1.08998 * 109.45247 * 58.64636 * 5 4 2 7 7 N 1.46500 * 109.46188 * 178.61818 * 5 4 2 8 8 C 1.36937 * 120.00061 * 205.07171 * 7 5 4 9 9 H 1.07993 * 119.99786 * 359.71528 * 8 7 5 10 10 C 1.38818 * 120.00014 * 179.72305 * 8 7 5 11 11 N 1.31623 * 119.99819 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 119.99977 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47337 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47320 * 119.99770 * 12 10 8 15 15 H 1.48504 * 109.46820 * 239.99685 * 12 10 8 16 16 C 1.53047 * 109.53851 * 298.63273 * 5 4 2 17 17 C 1.53194 * 109.30945 * 61.36814 * 16 5 4 18 18 N 1.46925 * 108.77556 * 305.36438 * 17 16 5 19 19 C 1.34780 * 120.63359 * 233.63408 * 18 17 16 20 20 O 1.21546 * 120.00296 * 175.24603 * 19 18 17 21 21 C 1.47876 * 119.99448 * 355.24096 * 19 18 17 22 22 C 1.39451 * 121.11546 * 322.74333 * 21 19 18 23 23 C 1.38621 * 119.37358 * 179.81391 * 22 21 19 24 24 N 1.31588 * 121.63678 * 0.45664 * 23 22 21 25 25 C 1.32211 * 121.86698 * 359.78423 * 24 23 22 26 26 C 1.40866 * 121.11336 * 143.03034 * 21 19 18 27 27 N 1.34399 * 135.14446 * 359.94145 * 26 21 19 28 28 N 1.28693 * 109.14796 * 180.02562 * 27 26 21 29 29 N 1.28782 * 111.76236 * 0.02562 * 28 27 26 30 30 C 1.46498 * 125.87202 * 180.02562 * 29 28 27 31 31 H 1.09007 * 109.47017 * 176.05116 * 1 2 3 32 32 H 1.08997 * 109.47484 * 296.05675 * 1 2 3 33 33 H 1.09002 * 109.47292 * 56.05839 * 1 2 3 34 34 H 1.09000 * 109.49445 * 54.47290 * 4 2 1 35 35 H 1.09000 * 109.49829 * 294.38062 * 4 2 1 36 36 H 0.97004 * 120.00052 * 24.78755 * 7 5 4 37 37 H 0.96998 * 119.99731 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.49806 * 181.31479 * 16 5 4 39 39 H 1.08998 * 109.50117 * 301.41818 * 16 5 4 40 40 H 1.08997 * 109.58833 * 65.15052 * 17 16 5 41 41 H 1.09001 * 109.58474 * 185.43630 * 17 16 5 42 42 H 1.08000 * 120.31515 * 0.02562 * 22 21 19 43 43 H 1.08002 * 119.18272 * 180.23747 * 23 22 21 44 44 H 1.09007 * 109.46901 * 89.97264 * 30 29 28 45 45 H 1.08993 * 109.47721 * 209.97580 * 30 29 28 46 46 H 1.08999 * 109.47133 * 329.97778 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2454 5 6 3.5675 -0.8479 1.1701 6 1 4.0059 0.1475 1.0992 7 7 4.0652 -1.5158 2.3753 8 6 5.3492 -1.2977 2.7982 9 1 5.9964 -0.6368 2.2407 10 6 5.8190 -1.9260 3.9434 11 7 5.0301 -2.7312 4.6230 12 14 7.5708 -1.6290 4.5199 13 1 8.2461 -0.6904 3.5881 14 1 7.5503 -1.0435 5.8844 15 1 8.3087 -2.9174 4.5451 16 6 3.9570 -1.6657 -0.0636 17 6 3.4651 -0.9468 -1.3238 18 7 2.0226 -0.6994 -1.1946 19 6 1.1674 -1.1068 -2.1533 20 8 -0.0305 -0.9740 -1.9956 21 6 1.6865 -1.7153 -3.3971 22 6 2.8603 -1.2522 -3.9905 23 6 3.3163 -1.8517 -5.1542 24 7 2.6638 -2.8441 -5.7208 25 6 1.5432 -3.3246 -5.2097 26 6 1.0085 -2.7783 -4.0253 27 7 -0.1135 -3.4741 -3.7736 28 7 -0.2750 -4.3611 -4.6919 29 7 0.6702 -4.3215 -5.5657 30 6 0.7916 -5.1903 -6.7389 31 1 -0.3633 -1.0253 -0.0708 32 1 -0.3634 0.4514 0.9232 33 1 -0.3634 0.5738 -0.8526 34 1 1.6030 -1.7254 1.2912 35 1 1.7659 -0.1670 2.1368 36 1 3.4839 -2.1094 2.8760 37 1 5.3585 -3.1705 5.4229 38 1 5.0412 -1.7695 -0.1038 39 1 3.4984 -2.6528 -0.0055 40 1 3.9903 0.0022 -1.4317 41 1 3.6542 -1.5705 -2.1975 42 1 3.4108 -0.4363 -3.5458 43 1 4.2278 -1.4930 -5.6091 44 1 0.2797 -4.7319 -7.5851 45 1 1.8452 -5.3270 -6.9824 46 1 0.3402 -6.1585 -6.5223 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044719660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:09 Heat of formation + Delta-G solvation = 141.487903 kcal Electronic energy + Delta-G solvation = -30460.665524 eV Core-core repulsion = 26389.443918 eV Total energy + Delta-G solvation = -4071.221607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.64657 -40.73866 -39.11998 -37.42970 -35.37437 -34.62259 -33.62619 -31.96895 -31.60126 -31.13397 -29.32401 -28.31993 -27.17005 -25.77303 -24.32189 -24.18233 -23.08420 -22.83561 -21.31919 -20.18464 -19.46725 -19.01135 -17.84694 -17.31617 -17.21853 -17.03257 -15.91911 -15.80452 -15.29601 -15.10345 -14.83436 -14.18714 -14.12758 -13.86715 -13.71297 -13.58113 -13.34139 -13.29161 -13.25302 -12.99241 -12.58888 -12.51480 -12.14929 -12.10157 -11.79403 -11.59144 -11.54999 -11.22154 -10.94604 -10.85342 -10.80319 -10.49059 -10.24320 -10.11096 -9.85364 -9.74442 -9.48316 -9.26882 -9.01649 -8.91857 -8.48031 -7.00451 -5.80005 -3.09489 -0.17643 0.56233 1.57973 1.94319 2.58953 2.81773 3.27447 3.32654 3.40144 3.45217 3.48118 3.89596 3.96189 4.15971 4.27015 4.54475 4.58060 4.61731 4.80457 4.88166 4.94988 5.11722 5.15654 5.23658 5.28199 5.30222 5.44575 5.47360 5.50006 5.59912 5.77536 5.81002 5.88606 6.01046 6.02922 6.12229 6.24037 6.33038 6.43135 6.46859 6.52212 6.75144 6.86838 7.01669 7.15357 7.39438 7.65783 7.93561 8.11805 8.37969 9.49255 10.06917 10.41365 11.42531 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.002749 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.275252 B =10182.323174 C =10900.429787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.150 3.850 3 H 0.075 0.925 4 C -0.136 4.136 5 C 0.179 3.821 6 H 0.049 0.951 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.071 0.929 10 C -0.014 4.014 11 N -0.931 5.931 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.152 4.152 17 C 0.091 3.909 18 N -0.592 5.592 19 C 0.555 3.445 20 O -0.504 6.504 21 C -0.003 4.003 22 C -0.148 4.148 23 C 0.159 3.841 24 N -0.460 5.460 25 C 0.210 3.790 26 C 0.001 3.999 27 N -0.221 5.221 28 N -0.004 5.004 29 N -0.311 5.311 30 C 0.091 3.909 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.077 0.923 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.165 0.835 43 H 0.182 0.818 44 H 0.090 0.910 45 H 0.102 0.898 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.071 1.741 -24.652 25.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.047 3.953 3 H 0.093 0.907 4 C -0.175 4.175 5 C 0.069 3.931 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.579 5.579 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.193 4.193 17 C -0.032 4.032 18 N -0.325 5.325 19 C 0.341 3.659 20 O -0.380 6.380 21 C -0.020 4.020 22 C -0.172 4.172 23 C -0.014 4.014 24 N -0.174 5.174 25 C -0.032 4.032 26 C -0.129 4.129 27 N -0.095 5.095 28 N 0.014 4.986 29 N -0.113 5.113 30 C -0.049 4.049 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.218 0.782 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.182 0.818 43 H 0.199 0.801 44 H 0.109 0.891 45 H 0.121 0.879 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.619 0.666 -24.898 25.771 hybrid contribution 1.655 0.456 0.788 1.888 sum -4.965 1.122 -24.110 24.642 Atomic orbital electron populations 1.22232 0.92667 1.03956 1.00613 1.21382 0.95581 0.94942 0.83378 0.90693 1.22318 0.97558 1.01146 0.96514 1.20163 0.90908 0.94927 0.87105 0.93352 1.42444 1.12901 1.54470 1.26588 1.19263 0.89076 1.22442 1.06289 0.91096 1.24764 0.98154 0.99883 0.98166 1.69677 1.35268 1.33743 1.19232 0.86141 0.84490 0.77268 0.78407 1.20542 1.21873 1.21922 1.22696 1.01772 1.00121 0.94684 1.22343 0.79413 1.00872 1.00524 1.48110 1.07616 1.56788 1.20013 1.17929 0.86362 0.78987 0.82616 1.90902 1.14659 1.54301 1.78122 1.19731 0.93402 0.93032 0.95794 1.22604 0.95150 1.02260 0.97137 1.22840 0.97898 0.89288 0.91353 1.66262 1.05230 1.12666 1.33216 1.19773 0.94322 0.94442 0.94633 1.20099 0.96143 1.00007 0.96609 1.75498 1.14410 1.03246 1.16373 1.78247 1.08920 1.15971 0.95469 1.47016 1.16481 1.25745 1.22039 1.22286 1.05546 0.93849 0.83226 0.90893 0.93581 0.91366 0.91663 0.90419 0.78229 0.93523 0.90445 0.92206 0.90798 0.89715 0.81774 0.80074 0.89104 0.87893 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 7.59 37.15 0.28 -1.71 16 2 C 0.15 2.10 3.49 -67.60 -0.24 1.87 16 3 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 4 C -0.14 -2.24 4.84 -26.61 -0.13 -2.37 16 5 C 0.18 3.31 2.73 -67.89 -0.19 3.13 16 6 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 7 N -0.72 -17.48 5.12 -53.38 -0.27 -17.76 16 8 C -0.24 -6.38 9.93 -15.06 -0.15 -6.53 16 9 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 11 N -0.93 -27.81 13.06 55.49 0.72 -27.08 16 12 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 17 C 0.09 1.08 4.88 -3.71 -0.02 1.06 16 18 N -0.59 -8.01 2.97 -166.31 -0.49 -8.50 16 19 C 0.55 8.22 7.33 -12.31 -0.09 8.13 16 20 O -0.50 -8.86 12.33 5.33 0.07 -8.80 16 21 C 0.00 -0.04 5.28 -104.51 -0.55 -0.59 16 22 C -0.15 -1.27 7.47 -38.99 -0.29 -1.56 16 23 C 0.16 1.18 11.14 -17.51 -0.20 0.98 16 24 N -0.46 -4.65 10.35 -12.38 -0.13 -4.77 16 25 C 0.21 2.57 8.08 -156.21 -1.26 1.30 16 26 C 0.00 0.01 7.01 -84.72 -0.59 -0.58 16 27 N -0.22 -3.60 12.42 32.23 0.40 -3.20 16 28 N 0.00 -0.06 13.07 60.35 0.79 0.73 16 29 N -0.31 -3.41 3.79 -67.23 -0.26 -3.66 16 30 C 0.09 0.48 11.41 59.85 0.68 1.16 16 31 H 0.07 1.22 6.74 -51.92 -0.35 0.87 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.01 6.75 -51.93 -0.35 0.66 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 37 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.71 8.11 -51.93 -0.42 0.29 16 41 H 0.08 0.85 4.49 -51.93 -0.23 0.62 16 42 H 0.16 0.97 6.30 -52.49 -0.33 0.63 16 43 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 44 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -35.54 372.08 -7.77 -43.31 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -6.20 Total: 6.07 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: -2.99 Total: 1.23 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: 0.76 Total: -64.25 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.07 Total: -8.80 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.54 -7.77 -43.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044719660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.794 kcal (2) G-P(sol) polarization free energy of solvation -35.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds