Wall clock time and date at job start Wed Apr 1 2020 03:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.69668 * 2 1 4 4 C 1.53187 * 109.58455 * 120.35394 * 2 1 3 5 5 C 1.53046 * 109.30865 * 174.42676 * 4 2 1 6 6 H 1.08997 * 109.46096 * 178.61720 * 5 4 2 7 7 N 1.46496 * 109.46361 * 58.65409 * 5 4 2 8 8 C 1.36935 * 120.00006 * 154.99924 * 7 5 4 9 9 H 1.07998 * 120.00264 * 0.02562 * 8 7 5 10 10 C 1.38817 * 119.99749 * 179.97438 * 8 7 5 11 11 N 1.31620 * 120.00241 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99727 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46957 * 90.00375 * 12 10 8 14 14 H 1.48500 * 109.47005 * 210.00298 * 12 10 8 15 15 H 1.48496 * 109.47188 * 330.00688 * 12 10 8 16 16 C 1.53044 * 109.53797 * 298.63140 * 5 4 2 17 17 C 1.52765 * 109.38003 * 61.23949 * 16 5 4 18 18 N 1.46921 * 109.01138 * 305.59152 * 17 16 5 19 19 C 1.34776 * 120.62829 * 233.58530 * 18 17 16 20 20 O 1.21552 * 119.99877 * 183.51684 * 19 18 17 21 21 C 1.47882 * 120.00283 * 3.51161 * 19 18 17 22 22 C 1.39448 * 121.10935 * 325.74513 * 21 19 18 23 23 C 1.38628 * 119.37058 * 179.70095 * 22 21 19 24 24 N 1.31583 * 121.63538 * 0.25328 * 23 22 21 25 25 C 1.32208 * 121.86908 * 0.02562 * 24 23 22 26 26 C 1.40861 * 121.11596 * 145.98311 * 21 19 18 27 27 N 1.34388 * 135.14666 * 359.94454 * 26 21 19 28 28 N 1.28691 * 109.15210 * 180.34135 * 27 26 21 29 29 N 1.28780 * 111.76071 * 0.02562 * 28 27 26 30 30 C 1.46498 * 125.87137 * 179.97438 * 29 28 27 31 31 H 1.09009 * 109.46694 * 173.25731 * 1 2 3 32 32 H 1.08998 * 109.47343 * 293.25787 * 1 2 3 33 33 H 1.09006 * 109.47107 * 53.26388 * 1 2 3 34 34 H 1.08998 * 109.50199 * 294.36938 * 4 2 1 35 35 H 1.08991 * 109.49959 * 54.44189 * 4 2 1 36 36 H 0.96996 * 120.00067 * 335.00014 * 7 5 4 37 37 H 0.97000 * 119.99827 * 179.97438 * 11 10 8 38 38 H 1.08996 * 109.50183 * 181.31646 * 16 5 4 39 39 H 1.09004 * 109.49736 * 301.42042 * 16 5 4 40 40 H 1.08997 * 109.50827 * 185.70135 * 17 16 5 41 41 H 1.09004 * 109.42856 * 65.42609 * 17 16 5 42 42 H 1.08003 * 120.32042 * 359.96847 * 22 21 19 43 43 H 1.07996 * 119.17982 * 180.27223 * 23 22 21 44 44 H 1.09003 * 109.47239 * 270.02242 * 30 29 28 45 45 H 1.09000 * 109.46776 * 30.02163 * 30 29 28 46 46 H 1.08994 * 109.47089 * 150.01890 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0435 -0.7293 1.2454 5 6 3.5675 -0.8478 1.1701 6 1 3.9379 -1.3447 2.0668 7 7 4.1570 0.4899 1.0749 8 6 5.4413 0.7039 1.4990 9 1 6.0199 -0.1135 1.9032 10 6 6.0001 1.9715 1.4082 11 7 5.2952 2.9676 0.9151 12 14 7.7519 2.2635 1.9874 13 1 8.6902 2.0402 0.8582 14 1 7.8861 3.6602 2.4737 15 1 8.0720 1.3224 3.0905 16 6 3.9570 -1.6656 -0.0635 17 6 3.4644 -0.9518 -1.3211 18 7 2.0226 -0.6995 -1.1945 19 6 1.1674 -1.1070 -2.1532 20 8 -0.0146 -0.8365 -2.0682 21 6 1.6670 -1.8832 -3.3085 22 6 2.9324 -1.6446 -3.8437 23 6 3.3671 -2.3979 -4.9233 24 7 2.6126 -3.3320 -5.4615 25 6 1.4022 -3.6017 -5.0032 26 6 0.8788 -2.8847 -3.9083 27 7 -0.3482 -3.3884 -3.6920 28 7 -0.5798 -4.3191 -4.5501 29 7 0.4157 -4.4906 -5.3488 30 6 0.4832 -5.4665 -6.4393 31 1 -0.3633 -1.0207 -0.1207 32 1 -0.3634 0.4058 0.9441 33 1 -0.3633 0.6147 -0.8236 34 1 1.7661 -0.1668 2.1368 35 1 1.6026 -1.7250 1.2916 36 1 3.6376 1.2241 0.7115 37 1 5.6856 3.8534 0.8521 38 1 5.0413 -1.7694 -0.1037 39 1 3.4984 -2.6527 -0.0052 40 1 3.6505 -1.5796 -2.1924 41 1 3.9928 -0.0048 -1.4310 42 1 3.5696 -0.8833 -3.4185 43 1 4.3493 -2.2136 -5.3326 44 1 0.8979 -6.4023 -6.0643 45 1 -0.5186 -5.6440 -6.8305 46 1 1.1204 -5.0795 -7.2344 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044719662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:12 Heat of formation + Delta-G solvation = 154.921588 kcal Electronic energy + Delta-G solvation = -30957.331768 eV Core-core repulsion = 26886.692689 eV Total energy + Delta-G solvation = -4070.639079 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.57839 -40.66952 -39.03100 -37.46883 -35.30973 -34.38169 -33.55081 -31.95530 -31.45120 -31.03425 -29.14752 -28.27063 -27.22452 -25.68345 -24.30119 -24.01291 -23.51590 -22.77599 -21.43533 -20.02366 -19.20743 -18.59024 -17.72896 -17.27088 -17.22721 -16.90013 -15.83094 -15.76155 -15.22761 -15.06267 -14.56435 -14.13612 -14.03252 -13.93493 -13.67919 -13.51326 -13.25277 -13.23572 -13.18898 -12.89077 -12.50394 -12.47096 -12.02931 -11.97021 -11.79487 -11.52892 -11.23724 -11.10099 -10.94337 -10.82029 -10.64790 -10.43355 -10.29573 -10.05148 -9.91729 -9.67335 -9.36539 -9.18360 -8.99258 -8.79468 -8.21242 -7.03059 -5.82969 -3.12098 -0.08880 0.65097 1.63904 2.01044 2.74885 2.98951 3.36626 3.38331 3.43859 3.44864 3.46204 3.98008 4.07045 4.28138 4.34878 4.53789 4.61404 4.73612 4.90402 4.93623 5.08902 5.23185 5.30768 5.32272 5.39652 5.48616 5.52500 5.57729 5.68324 5.75112 5.87055 5.89602 5.98761 6.06252 6.11026 6.16699 6.30573 6.38366 6.47149 6.56899 6.71741 6.75304 6.81780 7.01998 7.24132 7.61364 7.64897 7.99879 8.29627 8.35430 9.47030 10.03305 10.38486 11.39311 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017390 B = 0.003023 C = 0.002738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.722493 B = 9260.905554 C =10223.404382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.148 3.852 3 H 0.084 0.916 4 C -0.134 4.134 5 C 0.173 3.827 6 H 0.051 0.949 7 N -0.722 5.722 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.011 4.011 11 N -0.932 5.932 12 Si 0.905 3.095 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.283 1.283 16 C -0.150 4.150 17 C 0.081 3.919 18 N -0.585 5.585 19 C 0.552 3.448 20 O -0.509 6.509 21 C -0.002 4.002 22 C -0.156 4.156 23 C 0.160 3.840 24 N -0.462 5.462 25 C 0.209 3.791 26 C 0.001 3.999 27 N -0.220 5.220 28 N -0.008 5.008 29 N -0.312 5.312 30 C 0.092 3.908 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.178 0.822 43 H 0.183 0.817 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 -14.626 -14.000 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.046 3.954 3 H 0.102 0.898 4 C -0.173 4.173 5 C 0.063 3.937 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.208 4.208 11 N -0.580 5.580 12 Si 0.736 3.264 13 H -0.218 1.218 14 H -0.219 1.219 15 H -0.209 1.209 16 C -0.191 4.191 17 C -0.040 4.040 18 N -0.317 5.317 19 C 0.338 3.662 20 O -0.386 6.386 21 C -0.019 4.019 22 C -0.179 4.179 23 C -0.012 4.012 24 N -0.176 5.176 25 C -0.033 4.033 26 C -0.128 4.128 27 N -0.095 5.095 28 N 0.010 4.990 29 N -0.114 5.114 30 C -0.048 4.048 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.111 0.889 42 H 0.195 0.805 43 H 0.200 0.800 44 H 0.109 0.891 45 H 0.121 0.879 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.312 -15.525 -14.239 22.299 hybrid contribution 1.807 1.036 0.435 2.128 sum -5.506 -14.489 -13.804 20.755 Atomic orbital electron populations 1.22217 0.93033 1.03451 1.00742 1.21320 0.94994 0.95986 0.83138 0.89789 1.22256 0.97370 1.00348 0.97328 1.20194 0.90431 0.88118 0.94973 0.93079 1.42510 1.13763 1.04671 1.75472 1.19224 0.89706 0.94146 1.33974 0.91212 1.24720 0.98225 0.95895 1.01914 1.69649 1.36430 1.00615 1.51295 0.86234 0.84798 0.77119 0.78263 1.21772 1.21864 1.20855 1.22444 1.01480 0.97998 0.97147 1.22569 0.79314 1.02433 0.99734 1.48072 1.07708 1.56016 1.19939 1.17897 0.86098 0.80061 0.82180 1.90884 1.15777 1.55796 1.76101 1.19756 0.92567 0.93551 0.95995 1.22961 0.95109 1.02602 0.97261 1.22891 0.98515 0.88596 0.91219 1.66265 1.02415 1.18282 1.30651 1.19774 0.92157 0.95114 0.96238 1.20069 0.94260 1.00324 0.98173 1.75474 1.12861 1.04887 1.16253 1.78225 1.09887 1.12591 0.98292 1.46979 1.09851 1.27953 1.26630 1.22263 1.05782 0.90343 0.86450 0.91666 0.93726 0.90894 0.90540 0.92044 0.78124 0.93474 0.90578 0.93368 0.88987 0.88944 0.80483 0.80004 0.89134 0.87855 0.87974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.61 37.16 0.28 -1.94 16 2 C 0.15 2.45 3.20 -67.60 -0.22 2.24 16 3 H 0.08 1.55 6.64 -51.93 -0.34 1.20 16 4 C -0.13 -2.19 5.07 -26.61 -0.13 -2.32 16 5 C 0.17 3.14 3.10 -67.89 -0.21 2.93 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 7 N -0.72 -16.23 4.31 -53.38 -0.23 -16.46 16 8 C -0.24 -6.09 9.93 -15.06 -0.15 -6.24 16 9 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 11 N -0.93 -26.49 13.06 55.49 0.72 -25.77 16 12 Si 0.90 21.26 29.55 -169.99 -5.02 16.23 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 C -0.15 -2.34 5.76 -26.83 -0.15 -2.50 16 17 C 0.08 1.17 4.77 -3.93 -0.02 1.16 16 18 N -0.58 -9.20 2.98 -166.57 -0.50 -9.69 16 19 C 0.55 9.09 7.31 -12.31 -0.09 9.00 16 20 O -0.51 -9.69 12.36 5.32 0.07 -9.63 16 21 C 0.00 -0.03 5.55 -104.51 -0.58 -0.61 16 22 C -0.16 -1.65 7.56 -38.99 -0.29 -1.95 16 23 C 0.16 1.43 11.14 -17.51 -0.20 1.23 16 24 N -0.46 -5.10 10.35 -12.38 -0.13 -5.23 16 25 C 0.21 2.69 8.08 -156.21 -1.26 1.43 16 26 C 0.00 0.01 6.99 -84.72 -0.59 -0.58 16 27 N -0.22 -3.66 12.36 32.23 0.40 -3.26 16 28 N -0.01 -0.12 13.07 60.35 0.79 0.67 16 29 N -0.31 -3.53 3.79 -67.23 -0.26 -3.79 16 30 C 0.09 0.51 11.41 59.85 0.68 1.19 16 31 H 0.06 1.12 6.80 -51.92 -0.35 0.77 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 1.27 6.69 -51.93 -0.35 0.92 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.38 9.25 6.06 -40.82 -0.25 9.00 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.09 1.08 3.49 -52.25 -0.18 0.90 16 41 H 0.09 1.53 7.74 -51.93 -0.40 1.13 16 42 H 0.18 1.62 5.48 -52.48 -0.29 1.33 16 43 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -33.39 366.46 -7.60 -40.99 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.93 Total: 7.78 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -3.03 Total: 2.64 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.80 Total: -63.53 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.63 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.39 -7.60 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044719662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.907 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds