Wall clock time and date at job start Wed Apr 1 2020 03:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.58814 * 2 1 4 4 C 1.53163 * 109.70695 * 239.63737 * 2 1 3 5 5 C 1.53038 * 109.32900 * 185.49908 * 4 2 1 6 6 H 1.08999 * 109.46366 * 181.38772 * 5 4 2 7 7 N 1.46502 * 109.46099 * 301.36036 * 5 4 2 8 8 C 1.36937 * 119.99831 * 205.02085 * 7 5 4 9 9 H 1.07997 * 120.00268 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99778 * 179.97438 * 8 7 5 11 11 N 1.31614 * 119.99981 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99946 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47251 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47393 * 240.00276 * 12 10 8 15 15 H 1.48504 * 109.47115 * 120.00334 * 12 10 8 16 16 C 1.53042 * 109.52307 * 61.37467 * 5 4 2 17 17 C 1.53188 * 109.31548 * 298.63984 * 16 5 4 18 18 N 1.46926 * 109.58593 * 120.28798 * 2 1 3 19 19 C 1.34776 * 120.62895 * 353.55849 * 18 2 1 20 20 O 1.21282 * 120.00298 * 354.20601 * 19 18 2 21 21 C 1.50702 * 119.99870 * 174.20999 * 19 18 2 22 22 C 1.50698 * 109.47310 * 179.97438 * 21 19 18 23 23 N 1.32613 * 125.18317 * 90.02258 * 22 21 19 24 24 C 1.32830 * 109.75685 * 179.97438 * 23 22 21 25 25 N 1.33818 * 132.50587 * 180.02562 * 24 23 22 26 26 C 1.31344 * 120.86523 * 179.97438 * 25 24 23 27 27 C 1.40041 * 120.31564 * 0.02562 * 26 25 24 28 28 C 1.35780 * 119.23905 * 359.97438 * 27 26 25 29 29 N 1.35978 * 119.02051 * 0.02562 * 28 27 26 30 30 N 1.31176 * 125.18481 * 269.72127 * 22 21 19 31 31 H 1.09003 * 109.46787 * 305.45485 * 1 2 3 32 32 H 1.08998 * 109.46943 * 65.45635 * 1 2 3 33 33 H 1.09003 * 109.46825 * 185.45704 * 1 2 3 34 34 H 1.09002 * 109.47764 * 65.55175 * 4 2 1 35 35 H 1.08993 * 109.50544 * 305.46961 * 4 2 1 36 36 H 0.97001 * 119.99913 * 25.02701 * 7 5 4 37 37 H 0.97003 * 120.00097 * 359.97438 * 11 10 8 38 38 H 1.08999 * 109.49954 * 58.59574 * 16 5 4 39 39 H 1.09005 * 109.49491 * 178.65963 * 16 5 4 40 40 H 1.08999 * 109.58822 * 174.42476 * 17 16 5 41 41 H 1.09000 * 109.58643 * 294.70783 * 17 16 5 42 42 H 1.09002 * 109.46789 * 300.00112 * 21 19 18 43 43 H 1.09006 * 109.47244 * 59.99434 * 21 19 18 44 44 H 1.08003 * 119.84385 * 180.02562 * 26 25 24 45 45 H 1.07995 * 120.38199 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.49063 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2441 5 6 3.5706 -0.8443 -1.1674 6 1 3.9428 -1.3408 -2.0635 7 7 4.1573 0.4947 -1.0721 8 6 5.4415 0.7112 -1.4954 9 1 6.0217 -0.1049 -1.8999 10 6 5.9973 1.9801 -1.4055 11 7 5.2901 2.9749 -0.9130 12 14 7.7488 2.2757 -1.9836 13 1 8.3234 1.0043 -2.4922 14 1 8.5680 2.7704 -0.8481 15 1 7.7472 3.2875 -3.0706 16 6 3.9602 -1.6608 0.0670 17 6 3.4655 -0.9426 1.3264 18 7 2.0226 -0.6981 1.1953 19 6 1.1670 -1.1069 2.1531 20 8 -0.0065 -0.8085 2.0856 21 6 1.6687 -1.9348 3.3082 22 6 0.5216 -2.2572 4.2307 23 7 -0.2579 -3.3258 4.1362 24 6 -1.1677 -3.3050 5.1038 25 7 -2.1602 -4.1413 5.4298 26 6 -2.9408 -3.8929 6.4565 27 6 -2.7461 -2.7421 7.2304 28 6 -1.7416 -1.8876 6.9072 29 7 -0.9509 -2.1732 5.8384 30 7 0.1455 -1.5264 5.2531 31 1 -0.3633 0.5961 0.8371 32 1 -0.3633 0.4269 -0.9348 33 1 -0.3633 -1.0231 0.0977 34 1 1.7687 -0.1671 -2.1360 35 1 1.6080 -1.7256 -1.2903 36 1 3.6362 1.2279 -0.7090 37 1 4.3804 2.8215 -0.6132 38 1 3.5037 -2.6489 0.0086 39 1 5.0447 -1.7629 0.1082 40 1 3.6525 -1.5667 2.2002 41 1 3.9905 0.0063 1.4360 42 1 2.1027 -2.8604 2.9302 43 1 2.4275 -1.3743 3.8544 44 1 -3.7366 -4.5794 6.7051 45 1 -3.3870 -2.5370 8.0750 46 1 -1.5730 -0.9944 7.4904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044858070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:15 Heat of formation + Delta-G solvation = 137.468489 kcal Electronic energy + Delta-G solvation = -30123.565426 eV Core-core repulsion = 26052.169524 eV Total energy + Delta-G solvation = -4071.395902 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.19751 -40.43490 -39.14745 -37.52105 -34.92537 -34.42031 -33.40555 -32.12279 -31.97975 -30.99927 -29.54990 -28.70287 -26.93084 -25.11202 -24.29517 -23.96982 -23.42158 -22.45469 -21.24679 -19.97784 -18.74513 -18.59662 -18.30725 -17.28405 -17.07232 -16.67314 -16.41989 -15.92569 -15.50131 -15.01096 -14.74319 -14.15109 -14.10354 -13.82530 -13.70218 -13.64326 -13.36941 -13.25445 -12.99574 -12.91376 -12.87092 -12.29403 -12.26206 -11.97810 -11.90378 -11.54909 -11.27324 -10.83935 -10.69134 -10.55879 -10.43634 -10.36262 -10.32300 -10.20604 -10.04019 -9.96413 -9.19037 -9.13398 -8.96902 -8.89637 -8.24487 -7.06203 -6.11787 -3.12450 0.02941 0.36020 1.55302 2.17267 2.71795 2.86020 3.05663 3.25350 3.50448 3.56518 3.58623 3.65779 3.85675 4.14928 4.39079 4.58390 4.61691 4.65129 4.86485 5.09841 5.11463 5.16909 5.23436 5.32331 5.41528 5.43437 5.57019 5.64727 5.66756 5.79040 5.80778 5.89004 5.92386 5.94815 6.04327 6.10141 6.23216 6.35994 6.42976 6.52704 6.67343 6.68985 6.75759 6.99042 7.06094 7.63215 7.64884 7.80569 8.31431 8.73236 9.19867 10.06318 10.21615 11.36134 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.002264 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.879827 B =12366.590561 C =12621.930438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.149 3.851 3 H 0.075 0.925 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.733 5.733 8 C -0.330 4.330 9 H 0.065 0.935 10 C -0.045 4.045 11 N -0.944 5.944 12 Si 1.084 2.916 13 H -0.295 1.295 14 H -0.294 1.294 15 H -0.294 1.294 16 C -0.149 4.149 17 C 0.112 3.888 18 N -0.596 5.596 19 C 0.524 3.476 20 O -0.534 6.534 21 C -0.057 4.057 22 C 0.305 3.695 23 N -0.510 5.510 24 C 0.441 3.559 25 N -0.454 5.454 26 C 0.204 3.796 27 C -0.228 4.228 28 C 0.175 3.825 29 N -0.326 5.326 30 N -0.320 5.320 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.366 0.634 37 H 0.255 0.745 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.190 0.810 45 H 0.174 0.826 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.173 -13.172 17.419 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.047 3.953 3 H 0.093 0.907 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.070 0.930 7 N -0.377 5.377 8 C -0.461 4.461 9 H 0.083 0.917 10 C -0.243 4.243 11 N -0.590 5.590 12 Si 0.915 3.085 13 H -0.222 1.222 14 H -0.221 1.221 15 H -0.221 1.221 16 C -0.191 4.191 17 C -0.011 4.011 18 N -0.329 5.329 19 C 0.310 3.690 20 O -0.411 6.411 21 C -0.099 4.099 22 C 0.024 3.976 23 N -0.242 5.242 24 C 0.080 3.920 25 N -0.168 5.168 26 C 0.017 3.983 27 C -0.253 4.253 28 C 0.037 3.963 29 N -0.105 5.105 30 N -0.151 5.151 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.201 0.799 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.207 0.793 45 H 0.192 0.808 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.864 -12.306 16.255 24.655 hybrid contribution -1.315 -0.344 0.970 1.670 sum -15.180 -12.649 17.225 26.213 Atomic orbital electron populations 1.22191 0.93146 1.03165 1.00767 1.21217 0.94882 0.95697 0.83550 0.90688 1.22264 0.97431 1.00471 0.97218 1.20127 0.90217 0.87653 0.95132 0.92958 1.42531 1.14046 1.04757 1.76389 1.20094 0.90438 0.96965 1.38555 0.91669 1.25723 1.06067 0.91590 1.00886 1.70827 1.10917 1.32469 1.44769 0.83164 0.74475 0.74758 0.76081 1.22156 1.22105 1.22120 1.22503 1.01584 0.98058 0.96911 1.21779 0.78994 1.01843 0.98434 1.48114 1.07669 1.57080 1.20064 1.19890 0.86127 0.80089 0.82881 1.90762 1.17138 1.56778 1.76466 1.20182 0.93208 1.03154 0.93357 1.23562 0.94865 0.87310 0.91862 1.70693 1.07716 1.24295 1.21495 1.22730 0.94881 0.84315 0.90025 1.68001 1.03540 1.27399 1.17851 1.23578 0.94103 0.94090 0.86516 1.21941 1.00968 0.96982 1.05449 1.22182 0.87977 1.00043 0.86103 1.48794 1.22011 1.18699 1.21037 1.78575 1.02091 1.19400 1.15067 0.90744 0.93903 0.92027 0.90788 0.91810 0.79930 0.93402 0.92944 0.90613 0.90962 0.89772 0.85457 0.85921 0.79312 0.80837 0.80044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.62 37.16 0.28 -1.97 16 2 C 0.15 2.54 3.19 -67.61 -0.22 2.33 16 3 H 0.08 1.42 6.64 -51.93 -0.34 1.08 16 4 C -0.13 -2.26 5.08 -26.63 -0.14 -2.39 16 5 C 0.18 3.38 3.10 -67.89 -0.21 3.17 16 6 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 7 N -0.73 -17.13 4.31 -53.38 -0.23 -17.36 16 8 C -0.33 -8.79 9.93 -15.06 -0.15 -8.94 16 9 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 10 C -0.05 -1.27 5.50 -17.43 -0.10 -1.36 16 11 N -0.94 -28.50 13.70 55.49 0.76 -27.74 16 12 Si 1.08 25.49 29.92 -169.99 -5.09 20.40 16 13 H -0.30 -6.51 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 C -0.15 -2.42 5.78 -26.61 -0.15 -2.58 16 17 C 0.11 1.71 6.09 -3.71 -0.02 1.68 16 18 N -0.60 -9.54 2.97 -165.23 -0.49 -10.03 16 19 C 0.52 8.48 7.50 -10.98 -0.08 8.39 16 20 O -0.53 -10.16 11.60 5.56 0.06 -10.10 16 21 C -0.06 -0.74 4.68 -29.04 -0.14 -0.88 16 22 C 0.31 4.71 6.59 -157.01 -1.03 3.68 16 23 N -0.51 -8.46 11.25 -11.80 -0.13 -8.59 16 24 C 0.44 6.34 8.99 -323.13 -2.91 3.43 16 25 N -0.45 -5.21 10.48 -13.82 -0.14 -5.36 16 26 C 0.20 1.14 11.26 -17.08 -0.19 0.95 16 27 C -0.23 -0.86 10.06 -39.79 -0.40 -1.26 16 28 C 0.18 1.21 11.32 -16.59 -0.19 1.02 16 29 N -0.33 -4.10 3.91 -13.84 -0.05 -4.16 16 30 N -0.32 -4.81 12.78 32.39 0.41 -4.40 16 31 H 0.07 1.35 6.55 -51.93 -0.34 1.01 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.08 6.95 -51.93 -0.36 0.72 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.37 8.96 4.89 -40.82 -0.20 8.76 16 37 H 0.25 7.58 6.77 -40.82 -0.28 7.31 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 41 H 0.08 1.52 7.74 -51.93 -0.40 1.12 16 42 H 0.13 1.41 7.93 -51.93 -0.41 1.00 16 43 H 0.12 1.33 7.71 -51.93 -0.40 0.93 16 44 H 0.19 0.18 8.06 -52.48 -0.42 -0.24 16 45 H 0.17 -0.13 8.06 -52.49 -0.42 -0.55 16 46 H 0.18 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -37.93 370.81 -11.00 -48.93 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.05 Total: 7.52 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -5.64 Total: 5.28 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: 0.12 Total: -77.63 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.06 Total: -10.10 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.09 Total: 20.40 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.93 -11.00 -48.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044858070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.401 kcal (2) G-P(sol) polarization free energy of solvation -37.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds