Wall clock time and date at job start Wed Apr 1 2020 03:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.58814 * 2 1 4 4 C 1.53163 * 109.70695 * 239.63737 * 2 1 3 5 5 C 1.53038 * 109.32900 * 185.49908 * 4 2 1 6 6 H 1.08999 * 109.46366 * 181.38772 * 5 4 2 7 7 N 1.46502 * 109.46099 * 301.36036 * 5 4 2 8 8 C 1.36937 * 119.99831 * 205.02085 * 7 5 4 9 9 H 1.07997 * 120.00268 * 0.02562 * 8 7 5 10 10 C 1.38816 * 119.99778 * 179.97438 * 8 7 5 11 11 N 1.31614 * 119.99981 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99946 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47251 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47393 * 240.00276 * 12 10 8 15 15 H 1.48504 * 109.47115 * 120.00334 * 12 10 8 16 16 C 1.53042 * 109.52307 * 61.37467 * 5 4 2 17 17 C 1.53188 * 109.31548 * 298.63984 * 16 5 4 18 18 N 1.46926 * 109.58593 * 120.28798 * 2 1 3 19 19 C 1.34776 * 120.62895 * 353.55849 * 18 2 1 20 20 O 1.21282 * 120.00298 * 354.20601 * 19 18 2 21 21 C 1.50702 * 119.99870 * 174.20999 * 19 18 2 22 22 C 1.50698 * 109.47310 * 179.97438 * 21 19 18 23 23 N 1.32613 * 125.18317 * 90.02258 * 22 21 19 24 24 C 1.32830 * 109.75685 * 179.97438 * 23 22 21 25 25 N 1.33818 * 132.50587 * 180.02562 * 24 23 22 26 26 C 1.31344 * 120.86523 * 179.97438 * 25 24 23 27 27 C 1.40041 * 120.31564 * 0.02562 * 26 25 24 28 28 C 1.35780 * 119.23905 * 359.97438 * 27 26 25 29 29 N 1.35978 * 119.02051 * 0.02562 * 28 27 26 30 30 N 1.31176 * 125.18481 * 269.72127 * 22 21 19 31 31 H 1.09003 * 109.46787 * 305.45485 * 1 2 3 32 32 H 1.08998 * 109.46943 * 65.45635 * 1 2 3 33 33 H 1.09003 * 109.46825 * 185.45704 * 1 2 3 34 34 H 1.09002 * 109.47764 * 65.55175 * 4 2 1 35 35 H 1.08993 * 109.50544 * 305.46961 * 4 2 1 36 36 H 0.97001 * 119.99913 * 25.02701 * 7 5 4 37 37 H 0.97003 * 120.00097 * 359.97438 * 11 10 8 38 38 H 1.08999 * 109.49954 * 58.59574 * 16 5 4 39 39 H 1.09005 * 109.49491 * 178.65963 * 16 5 4 40 40 H 1.08999 * 109.58822 * 174.42476 * 17 16 5 41 41 H 1.09000 * 109.58643 * 294.70783 * 17 16 5 42 42 H 1.09002 * 109.46789 * 300.00112 * 21 19 18 43 43 H 1.09006 * 109.47244 * 59.99434 * 21 19 18 44 44 H 1.08003 * 119.84385 * 180.02562 * 26 25 24 45 45 H 1.07995 * 120.38199 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.49063 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0465 -0.7288 -1.2441 5 6 3.5706 -0.8443 -1.1674 6 1 3.9428 -1.3408 -2.0635 7 7 4.1573 0.4947 -1.0721 8 6 5.4415 0.7112 -1.4954 9 1 6.0217 -0.1049 -1.8999 10 6 5.9973 1.9801 -1.4055 11 7 5.2901 2.9749 -0.9130 12 14 7.7488 2.2757 -1.9836 13 1 8.3234 1.0043 -2.4922 14 1 8.5680 2.7704 -0.8481 15 1 7.7472 3.2875 -3.0706 16 6 3.9602 -1.6608 0.0670 17 6 3.4655 -0.9426 1.3264 18 7 2.0226 -0.6981 1.1953 19 6 1.1670 -1.1069 2.1531 20 8 -0.0065 -0.8085 2.0856 21 6 1.6687 -1.9348 3.3082 22 6 0.5216 -2.2572 4.2307 23 7 -0.2579 -3.3258 4.1362 24 6 -1.1677 -3.3050 5.1038 25 7 -2.1602 -4.1413 5.4298 26 6 -2.9408 -3.8929 6.4565 27 6 -2.7461 -2.7421 7.2304 28 6 -1.7416 -1.8876 6.9072 29 7 -0.9509 -2.1732 5.8384 30 7 0.1455 -1.5264 5.2531 31 1 -0.3633 0.5961 0.8371 32 1 -0.3633 0.4269 -0.9348 33 1 -0.3633 -1.0231 0.0977 34 1 1.7687 -0.1671 -2.1360 35 1 1.6080 -1.7256 -1.2903 36 1 3.6362 1.2279 -0.7090 37 1 4.3804 2.8215 -0.6132 38 1 3.5037 -2.6489 0.0086 39 1 5.0447 -1.7629 0.1082 40 1 3.6525 -1.5667 2.2002 41 1 3.9905 0.0063 1.4360 42 1 2.1027 -2.8604 2.9302 43 1 2.4275 -1.3743 3.8544 44 1 -3.7366 -4.5794 6.7051 45 1 -3.3870 -2.5370 8.0750 46 1 -1.5730 -0.9944 7.4904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044858070.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:14 Heat of formation + Delta-G solvation = 112.858593 kcal Electronic energy + Delta-G solvation = -30124.632591 eV Core-core repulsion = 26052.169524 eV Total energy + Delta-G solvation = -4072.463067 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.01650 -41.73017 -39.92039 -38.93221 -36.15422 -35.67336 -34.60441 -33.79800 -32.98998 -31.82647 -30.78948 -30.18411 -28.34678 -25.81780 -25.57735 -25.35247 -24.89217 -23.61592 -22.40362 -21.29141 -19.95467 -19.49526 -19.21950 -19.08184 -18.18148 -17.48984 -17.36021 -17.11695 -16.84878 -16.38931 -15.82631 -15.47444 -15.43991 -15.27402 -15.00328 -14.73751 -14.52005 -14.43427 -14.17475 -13.76891 -13.72686 -13.54739 -13.43113 -13.23403 -13.09429 -13.03016 -12.74879 -12.64524 -12.22411 -12.06937 -11.93113 -11.81749 -11.66993 -11.39064 -11.15792 -11.03312 -10.89760 -10.78330 -10.22444 -9.92770 -9.63283 -9.05023 -8.31731 -5.25500 -0.51574 -0.34871 0.84533 1.26439 1.47590 1.61020 1.71564 1.82744 1.91515 2.23841 2.38351 2.74698 2.77385 3.33760 3.42423 3.46384 3.49715 3.72131 3.85400 3.89939 3.92832 3.97966 4.10473 4.18583 4.22972 4.26901 4.37564 4.40721 4.51450 4.56036 4.68009 4.72811 4.80821 4.83296 4.98253 4.99236 5.04552 5.06749 5.15268 5.17630 5.27279 5.31778 5.36004 5.62799 5.69557 6.35847 6.36976 6.55259 6.77107 7.04560 7.15229 8.06187 8.18520 9.19768 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.024775 B = 0.002264 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.879827 B =12366.590561 C =12621.930438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.150 3.850 3 H 0.050 0.950 4 C -0.123 4.123 5 C 0.171 3.829 6 H 0.047 0.953 7 N -0.742 5.742 8 C -0.316 4.316 9 H 0.068 0.932 10 C -0.107 4.107 11 N -0.980 5.980 12 Si 1.129 2.871 13 H -0.270 1.270 14 H -0.294 1.294 15 H -0.298 1.298 16 C -0.141 4.141 17 C 0.116 3.884 18 N -0.595 5.595 19 C 0.523 3.477 20 O -0.565 6.565 21 C -0.050 4.050 22 C 0.289 3.711 23 N -0.558 5.558 24 C 0.420 3.580 25 N -0.496 5.496 26 C 0.213 3.787 27 C -0.188 4.188 28 C 0.142 3.858 29 N -0.333 5.333 30 N -0.350 5.350 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.358 0.642 37 H 0.242 0.758 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.052 0.948 42 H 0.150 0.850 43 H 0.144 0.856 44 H 0.241 0.759 45 H 0.233 0.767 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.424 -15.235 19.575 29.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.047 3.953 3 H 0.068 0.932 4 C -0.162 4.162 5 C 0.062 3.938 6 H 0.065 0.935 7 N -0.385 5.385 8 C -0.448 4.448 9 H 0.086 0.914 10 C -0.298 4.298 11 N -0.629 5.629 12 Si 0.955 3.045 13 H -0.195 1.195 14 H -0.221 1.221 15 H -0.225 1.225 16 C -0.181 4.181 17 C -0.006 4.006 18 N -0.328 5.328 19 C 0.311 3.689 20 O -0.445 6.445 21 C -0.092 4.092 22 C 0.008 3.992 23 N -0.292 5.292 24 C 0.060 3.940 25 N -0.213 5.213 26 C 0.030 3.970 27 C -0.212 4.212 28 C 0.007 3.993 29 N -0.112 5.112 30 N -0.183 5.183 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.191 0.809 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.071 0.929 42 H 0.167 0.833 43 H 0.162 0.838 44 H 0.257 0.743 45 H 0.250 0.750 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -15.163 -14.429 18.458 27.907 hybrid contribution -1.221 0.185 0.485 1.326 sum -16.383 -14.245 18.943 28.812 Atomic orbital electron populations 1.21993 0.92711 1.02343 1.00612 1.21082 0.95041 0.94680 0.84483 0.93249 1.22134 0.95907 1.01366 0.96746 1.20375 0.91321 0.85826 0.96244 0.93543 1.42682 1.13213 1.06403 1.76248 1.20397 0.91479 0.96666 1.36245 0.91366 1.27008 1.09190 0.91926 1.01693 1.70939 1.10798 1.33552 1.47625 0.82573 0.70890 0.75535 0.75463 1.19524 1.22143 1.22524 1.22363 1.01344 0.98864 0.95548 1.21765 0.78095 1.00917 0.99787 1.48112 1.07987 1.56880 1.19788 1.20388 0.85626 0.79702 0.83182 1.90747 1.18607 1.57958 1.77216 1.20221 0.93206 1.03690 0.92071 1.23752 0.95520 0.87506 0.92469 1.70542 1.09348 1.25604 1.23684 1.22928 0.95434 0.85334 0.90274 1.68116 1.04407 1.27968 1.20787 1.24666 0.93061 0.95046 0.84207 1.22683 0.99011 0.94363 1.05146 1.23151 0.88387 1.02311 0.85470 1.48850 1.21983 1.18236 1.22153 1.78367 1.03704 1.20519 1.15685 0.92548 0.92668 0.92731 0.91291 0.89822 0.80855 0.94741 0.90078 0.91308 0.86899 0.92931 0.83265 0.83815 0.74338 0.75037 0.77190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 7.62 71.98 0.55 -3.52 16 2 C 0.15 5.24 3.19 44.97 0.14 5.38 16 3 H 0.05 1.98 6.64 -2.39 -0.02 1.97 16 4 C -0.12 -4.07 5.08 30.66 0.16 -3.92 16 5 C 0.17 6.38 3.10 45.02 0.14 6.52 16 6 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 7 N -0.74 -35.30 4.31 -322.81 -1.39 -36.69 16 8 C -0.32 -16.96 9.93 84.03 0.83 -16.13 16 9 H 0.07 3.57 7.83 -2.91 -0.02 3.55 16 10 C -0.11 -6.09 5.50 84.86 0.47 -5.63 16 11 N -0.98 -60.87 13.70 21.65 0.30 -60.57 16 12 Si 1.13 51.63 29.92 68.60 2.05 53.68 16 13 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 14 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 15 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 16 C -0.14 -4.36 5.78 30.67 0.18 -4.18 16 17 C 0.12 3.47 6.09 86.36 0.53 3.99 16 18 N -0.60 -19.05 2.97 -795.07 -2.36 -21.41 16 19 C 0.52 17.03 7.50 87.66 0.66 17.69 16 20 O -0.57 -22.19 11.60 -3.03 -0.04 -22.23 16 21 C -0.05 -1.30 4.68 29.10 0.14 -1.16 16 22 C 0.29 9.13 6.59 138.69 0.91 10.04 16 23 N -0.56 -19.05 11.25 -191.25 -2.15 -21.20 16 24 C 0.42 12.17 8.99 261.60 2.35 14.52 16 25 N -0.50 -10.82 10.48 -197.64 -2.07 -12.90 16 26 C 0.21 1.59 11.26 85.20 0.96 2.55 16 27 C -0.19 -0.54 10.06 22.14 0.22 -0.32 16 28 C 0.14 1.62 11.32 83.48 0.94 2.57 16 29 N -0.33 -8.27 3.91 -197.70 -0.77 -9.04 16 30 N -0.35 -10.76 12.78 -51.45 -0.66 -11.41 16 31 H 0.06 2.12 6.55 -2.39 -0.02 2.11 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.05 1.93 6.95 -2.39 -0.02 1.91 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.36 18.25 4.89 -92.71 -0.45 17.80 16 37 H 0.24 15.07 6.77 -92.71 -0.63 14.44 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.07 2.25 8.14 -2.38 -0.02 2.24 16 40 H 0.11 2.44 5.93 -2.39 -0.01 2.43 16 41 H 0.05 1.93 7.74 -2.39 -0.02 1.91 16 42 H 0.15 3.10 7.93 -2.39 -0.02 3.08 16 43 H 0.14 2.99 7.71 -2.38 -0.02 2.98 16 44 H 0.24 -0.88 8.06 -2.91 -0.02 -0.90 16 45 H 0.23 -2.06 8.06 -2.91 -0.02 -2.08 16 46 H 0.21 0.93 8.06 -2.91 -0.02 0.90 16 Total: -1.00 -89.57 370.81 2.80 -86.77 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.71 Total: 26.58 kcal Atomic # 6 Polarization: 19.24 SS G_CDS: 9.18 Total: 28.42 kcal Atomic # 7 Polarization: -164.12 SS G_CDS: -9.11 Total: -173.23 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.04 Total: -22.23 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.05 Total: 53.68 kcal Total: -89.57 2.80 -86.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044858070.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 199.631 kcal (2) G-P(sol) polarization free energy of solvation -89.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds