Wall clock time and date at job start Wed Apr 1 2020 03:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.69965 * 2 1 4 4 C 1.52763 * 109.43335 * 120.16015 * 2 1 3 5 5 C 1.53046 * 109.37952 * 65.42565 * 4 2 1 6 6 H 1.08992 * 109.44844 * 301.22572 * 5 4 2 7 7 N 1.46498 * 109.45753 * 181.25751 * 5 4 2 8 8 C 1.36942 * 119.99967 * 154.93182 * 7 5 4 9 9 H 1.08003 * 119.99581 * 0.02562 * 8 7 5 10 10 C 1.38806 * 120.00028 * 180.02562 * 8 7 5 11 11 N 1.31615 * 120.00496 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 119.99836 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46955 * 60.00234 * 12 10 8 14 14 H 1.48502 * 109.46994 * 179.97438 * 12 10 8 15 15 H 1.48491 * 109.47065 * 300.00246 * 12 10 8 16 16 C 1.53039 * 109.53618 * 61.23895 * 5 4 2 17 17 C 1.53191 * 109.31723 * 298.63472 * 16 5 4 18 18 N 1.46923 * 109.58858 * 239.64573 * 2 1 3 19 19 C 1.34769 * 120.63264 * 113.84282 * 18 2 1 20 20 O 1.21284 * 120.00329 * 359.71958 * 19 18 2 21 21 C 1.50708 * 120.00229 * 179.72140 * 19 18 2 22 22 C 1.50695 * 109.47161 * 179.97438 * 21 19 18 23 23 N 1.32620 * 125.18624 * 269.99911 * 22 21 19 24 24 C 1.32820 * 109.75684 * 180.02562 * 23 22 21 25 25 N 1.33823 * 132.50133 * 180.02562 * 24 23 22 26 26 C 1.31352 * 120.86523 * 180.02562 * 25 24 23 27 27 C 1.40038 * 120.31174 * 0.27523 * 26 25 24 28 28 C 1.35787 * 119.24041 * 359.44753 * 27 26 25 29 29 N 1.35978 * 119.01804 * 0.54168 * 28 27 26 30 30 N 1.31181 * 125.18995 * 89.99798 * 22 21 19 31 31 H 1.09006 * 109.47211 * 180.36100 * 1 2 3 32 32 H 1.09003 * 109.47117 * 300.35306 * 1 2 3 33 33 H 1.09001 * 109.47602 * 60.35527 * 1 2 3 34 34 H 1.08996 * 109.56492 * 305.39089 * 4 2 1 35 35 H 1.08999 * 109.38402 * 185.34767 * 4 2 1 36 36 H 0.96998 * 120.00649 * 334.93300 * 7 5 4 37 37 H 0.97003 * 120.00647 * 180.02562 * 11 10 8 38 38 H 1.09003 * 109.49519 * 178.68016 * 16 5 4 39 39 H 1.09003 * 109.50015 * 58.59056 * 16 5 4 40 40 H 1.09002 * 109.58363 * 294.84741 * 17 16 5 41 41 H 1.09002 * 109.58999 * 174.42349 * 17 16 5 42 42 H 1.09003 * 109.46634 * 59.99569 * 21 19 18 43 43 H 1.08994 * 109.46699 * 299.99886 * 21 19 18 44 44 H 1.08002 * 119.84122 * 179.97438 * 26 25 24 45 45 H 1.08004 * 120.38283 * 179.72164 * 27 26 25 46 46 H 1.07994 * 120.49314 * 180.24656 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0263 0.0000 4 6 2.0382 -0.7238 1.2456 5 6 1.6410 -2.2000 1.1727 6 1 0.5565 -2.2808 1.0995 7 7 2.1015 -2.8895 2.3805 8 6 1.4659 -4.0259 2.8045 9 1 0.6255 -4.4141 2.2483 10 6 1.9019 -4.6789 3.9492 11 7 2.9258 -4.2056 4.6274 12 14 1.0354 -6.2296 4.5272 13 1 1.1191 -7.2674 3.4683 14 1 1.6889 -6.7304 5.7631 15 1 -0.3901 -5.9242 4.8093 16 6 2.2844 -2.8429 -0.0581 17 6 1.7741 -2.1421 -1.3210 18 7 2.0225 -0.6995 -1.1945 19 6 2.6944 -0.0318 -2.1531 20 8 2.8931 1.1590 -2.0370 21 6 3.1988 -0.7647 -3.3695 22 6 3.9097 0.2030 -4.2801 23 7 3.3365 0.8989 -5.2527 24 6 4.2450 1.6537 -5.8602 25 7 4.1678 2.5166 -6.8802 26 6 5.2347 3.1536 -7.3061 27 6 6.4778 2.9344 -6.6998 28 6 6.5647 2.0650 -5.6604 29 7 5.4419 1.4214 -5.2431 30 7 5.1898 0.4855 -4.2317 31 1 -0.3634 -1.0277 0.0065 32 1 -0.3633 0.5193 0.8868 33 1 -0.3634 0.5083 -0.8931 34 1 1.5987 -0.2722 2.1349 35 1 3.1240 -0.6412 1.2942 36 1 2.8565 -2.5410 2.8799 37 1 3.2307 -4.6621 5.4271 38 1 2.0201 -3.8998 -0.0964 39 1 3.3679 -2.7404 0.0024 40 1 0.7044 -2.3204 -1.4310 41 1 2.3025 -2.5288 -2.1924 42 1 2.3573 -1.2108 -3.8997 43 1 3.8904 -1.5484 -3.0606 44 1 5.1536 3.8461 -8.1309 45 1 7.3566 3.4542 -7.0520 46 1 7.5125 1.8837 -5.1754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044858071.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:19 Heat of formation + Delta-G solvation = 120.682208 kcal Electronic energy + Delta-G solvation = -29515.187059 eV Core-core repulsion = 25443.063249 eV Total energy + Delta-G solvation = -4072.123810 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.22834 -40.33888 -39.16815 -37.59797 -34.94263 -34.54951 -33.20684 -32.13558 -31.79919 -31.03149 -29.73834 -29.06828 -27.26437 -25.14437 -24.34924 -24.08120 -22.99305 -22.46383 -21.31011 -20.20712 -18.78479 -18.48012 -18.26939 -17.49771 -17.01445 -16.72622 -16.62237 -15.68773 -15.41655 -14.98121 -14.89021 -14.13360 -14.01261 -13.94657 -13.74833 -13.49901 -13.39338 -13.23041 -13.00476 -12.90515 -12.72455 -12.61013 -12.32821 -12.14461 -11.79827 -11.63730 -11.26967 -10.92533 -10.86712 -10.75484 -10.46714 -10.45746 -10.39471 -10.23733 -10.11456 -9.77053 -9.62833 -9.61579 -9.15883 -8.91124 -8.50803 -6.98934 -5.78432 -3.07766 0.00561 0.33464 1.52530 2.13033 2.62771 2.81835 3.01294 3.17035 3.42056 3.46737 3.47777 3.55170 3.83930 4.10579 4.36782 4.48511 4.56318 4.58631 4.84192 5.01357 5.05593 5.09576 5.17920 5.27397 5.33220 5.38783 5.47083 5.58743 5.61607 5.75367 5.76937 5.81929 5.87162 5.89859 5.92456 6.08673 6.19612 6.30591 6.38422 6.47056 6.54378 6.63482 6.89742 7.03405 7.04446 7.48020 7.61220 7.66665 8.18187 8.39731 9.50840 10.08679 10.43115 11.43959 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.025641 B = 0.002029 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.729927 B =13794.023180 C =14139.671792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.143 3.857 3 H 0.094 0.906 4 C -0.134 4.134 5 C 0.179 3.821 6 H 0.052 0.948 7 N -0.724 5.724 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.152 4.152 17 C 0.103 3.897 18 N -0.597 5.597 19 C 0.526 3.474 20 O -0.540 6.540 21 C -0.054 4.054 22 C 0.303 3.697 23 N -0.511 5.511 24 C 0.441 3.559 25 N -0.454 5.454 26 C 0.204 3.796 27 C -0.228 4.228 28 C 0.175 3.825 29 N -0.326 5.326 30 N -0.319 5.319 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.062 0.938 36 H 0.384 0.616 37 H 0.256 0.744 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.190 0.810 45 H 0.175 0.825 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.399 13.392 -24.809 28.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.173 4.173 5 C 0.068 3.932 6 H 0.070 0.930 7 N -0.364 5.364 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.193 4.193 17 C -0.020 4.020 18 N -0.331 5.331 19 C 0.312 3.688 20 O -0.418 6.418 21 C -0.096 4.096 22 C 0.021 3.979 23 N -0.243 5.243 24 C 0.081 3.919 25 N -0.168 5.168 26 C 0.018 3.982 27 C -0.253 4.253 28 C 0.037 3.963 29 N -0.105 5.105 30 N -0.150 5.150 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.207 0.793 45 H 0.192 0.808 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 5.488 13.400 -24.402 28.375 hybrid contribution 0.851 -0.811 0.731 1.385 sum 6.339 12.589 -23.671 27.550 Atomic orbital electron populations 1.22146 0.94912 1.02831 1.01964 1.21101 0.94109 0.97062 0.83704 0.88772 1.22147 1.01404 0.97320 0.96404 1.20197 0.96831 0.89103 0.87027 0.93010 1.42432 1.38186 1.29340 1.26454 1.19178 1.10415 1.01141 1.06358 0.91215 1.24750 0.98527 0.99477 0.98181 1.69650 1.27707 1.41355 1.19326 0.86286 0.78823 0.83249 0.77916 1.21289 1.21750 1.21275 1.22692 1.01304 1.00595 0.94736 1.21936 1.01332 0.79022 0.99728 1.48165 1.54992 1.09621 1.20278 1.19921 0.78121 0.87277 0.83464 1.90715 1.57490 1.15097 1.78449 1.20124 1.01455 0.95497 0.92544 1.23555 0.87951 0.94149 0.92219 1.70679 1.28268 1.13264 1.12069 1.22721 0.81644 0.95343 0.92219 1.68009 1.31459 1.07377 1.09982 1.23586 0.86538 0.92432 0.95671 1.21953 1.01677 1.02831 0.98830 1.22195 0.90771 0.89641 0.93667 1.48785 1.09752 1.28546 1.23438 1.78579 1.17483 1.10839 1.08089 0.91554 0.91343 0.92811 0.90494 0.91892 0.78291 0.93457 0.90495 0.92106 0.91009 0.90446 0.85337 0.85612 0.79279 0.80799 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.02 37.16 0.34 -1.76 16 2 C 0.14 2.12 3.19 -67.82 -0.22 1.90 16 3 H 0.09 1.51 7.01 -51.93 -0.36 1.14 16 4 C -0.13 -2.22 4.99 -26.83 -0.13 -2.36 16 5 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 6 H 0.05 0.97 6.43 -51.93 -0.33 0.64 16 7 N -0.72 -17.49 5.12 -53.39 -0.27 -17.77 16 8 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 9 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 10 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 11 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 12 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 17 C 0.10 1.26 5.93 -3.71 -0.02 1.24 16 18 N -0.60 -8.37 2.68 -165.47 -0.44 -8.81 16 19 C 0.53 7.96 7.69 -10.98 -0.08 7.87 16 20 O -0.54 -10.28 15.45 5.55 0.09 -10.19 16 21 C -0.05 -0.65 4.67 -29.03 -0.14 -0.79 16 22 C 0.30 4.49 6.59 -157.01 -1.03 3.45 16 23 N -0.51 -8.17 11.25 -11.80 -0.13 -8.30 16 24 C 0.44 6.15 8.99 -323.15 -2.91 3.24 16 25 N -0.45 -5.02 10.48 -13.82 -0.14 -5.17 16 26 C 0.20 1.07 11.27 -17.08 -0.19 0.88 16 27 C -0.23 -0.78 10.06 -39.78 -0.40 -1.18 16 28 C 0.18 1.16 11.32 -16.59 -0.19 0.97 16 29 N -0.33 -3.98 3.91 -13.84 -0.05 -4.04 16 30 N -0.32 -4.66 12.78 32.39 0.41 -4.25 16 31 H 0.07 0.87 5.74 -51.93 -0.30 0.57 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.38 10.04 7.80 -40.82 -0.32 9.72 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.07 0.81 7.52 -51.93 -0.39 0.42 16 41 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 42 H 0.13 1.22 7.94 -51.93 -0.41 0.80 16 43 H 0.13 1.23 7.69 -51.93 -0.40 0.83 16 44 H 0.19 0.11 8.06 -52.49 -0.42 -0.31 16 45 H 0.17 -0.18 8.06 -52.48 -0.42 -0.61 16 46 H 0.18 0.61 8.06 -52.49 -0.42 0.18 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -38.69 378.16 -10.87 -49.56 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.18 Total: 6.39 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -5.55 Total: 6.99 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: 0.09 Total: -75.42 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -38.69 -10.87 -49.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044858071.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.241 kcal (2) G-P(sol) polarization free energy of solvation -38.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds