Wall clock time and date at job start Wed Apr 1 2020 03:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.59136 * 2 1 4 4 C 1.53190 * 109.58629 * 120.43079 * 2 1 3 5 5 C 1.53041 * 109.31494 * 174.41745 * 4 2 1 6 6 H 1.09006 * 109.44703 * 58.64681 * 5 4 2 7 7 N 1.46498 * 109.46075 * 178.61131 * 5 4 2 8 8 C 1.36937 * 119.99735 * 205.06930 * 7 5 4 9 9 H 1.08003 * 120.00646 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99880 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99744 * 359.97438 * 10 8 7 12 12 Si 1.86794 * 120.00233 * 180.02562 * 10 8 7 13 13 H 1.48507 * 109.47132 * 359.97438 * 12 10 8 14 14 H 1.48502 * 109.47494 * 119.99494 * 12 10 8 15 15 H 1.48504 * 109.47329 * 240.00258 * 12 10 8 16 16 C 1.53034 * 109.54000 * 298.63599 * 5 4 2 17 17 C 1.53192 * 109.31580 * 61.35909 * 16 5 4 18 18 N 1.46927 * 109.58280 * 239.71598 * 2 1 3 19 19 C 1.34769 * 120.63237 * 6.58626 * 18 2 1 20 20 O 1.21281 * 120.00321 * 354.97010 * 19 18 2 21 21 C 1.50710 * 120.00241 * 174.97414 * 19 18 2 22 22 C 1.50696 * 109.47247 * 179.97438 * 21 19 18 23 23 N 1.32611 * 125.18668 * 90.02383 * 22 21 19 24 24 C 1.32827 * 109.76192 * 179.97438 * 23 22 21 25 25 N 1.33815 * 132.50666 * 180.02562 * 24 23 22 26 26 C 1.31350 * 120.86560 * 179.97438 * 25 24 23 27 27 C 1.40046 * 120.31055 * 359.96486 * 26 25 24 28 28 C 1.35777 * 119.24026 * 0.02562 * 27 26 25 29 29 N 1.35973 * 119.02252 * 359.97438 * 28 27 26 30 30 N 1.31178 * 125.18614 * 269.71540 * 22 21 19 31 31 H 1.08989 * 109.47550 * 175.94482 * 1 2 3 32 32 H 1.08997 * 109.47109 * 295.94768 * 1 2 3 33 33 H 1.09001 * 109.46912 * 55.93950 * 1 2 3 34 34 H 1.09001 * 109.49635 * 54.46607 * 4 2 1 35 35 H 1.08999 * 109.49652 * 294.36944 * 4 2 1 36 36 H 0.96993 * 120.00198 * 25.06865 * 7 5 4 37 37 H 0.97002 * 119.99990 * 180.02562 * 11 10 8 38 38 H 1.08994 * 109.50049 * 181.31546 * 16 5 4 39 39 H 1.09004 * 109.49567 * 301.38153 * 16 5 4 40 40 H 1.09004 * 109.58695 * 65.15209 * 17 16 5 41 41 H 1.08994 * 109.58957 * 185.43544 * 17 16 5 42 42 H 1.08999 * 109.46829 * 299.99702 * 21 19 18 43 43 H 1.08999 * 109.47036 * 59.99800 * 21 19 18 44 44 H 1.08001 * 119.84739 * 179.97438 * 26 25 24 45 45 H 1.08006 * 120.38219 * 179.97438 * 27 26 25 46 46 H 1.08008 * 120.49151 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7310 1.2444 5 6 3.5675 -0.8496 1.1690 6 1 4.0060 0.1459 1.0993 7 7 4.0651 -1.5189 2.3734 8 6 5.3492 -1.3014 2.7965 9 1 5.9953 -0.6368 2.2421 10 6 5.8210 -1.9360 3.9374 11 7 5.0339 -2.7463 4.6128 12 14 7.5723 -1.6387 4.5150 13 1 8.2452 -0.6927 3.5888 14 1 7.5513 -1.0619 5.8832 15 1 8.3133 -2.9256 4.5316 16 6 3.9568 -1.6658 -0.0656 17 6 3.4650 -0.9455 -1.3250 18 7 2.0224 -0.6981 -1.1954 19 6 1.1673 -1.1042 -2.1546 20 8 -0.0282 -0.9767 -1.9948 21 6 1.6964 -1.7169 -3.4258 22 6 0.5437 -2.0825 -4.3249 23 7 0.0030 -1.2856 -5.2366 24 6 -0.9904 -1.9167 -5.8524 25 7 -1.8286 -1.5481 -6.8281 26 6 -2.7469 -2.3740 -7.2754 27 6 -2.8634 -3.6610 -6.7355 28 6 -2.0171 -4.0438 -5.7452 29 7 -1.0774 -3.1656 -5.3042 30 7 -0.0742 -3.2397 -4.3291 31 1 -0.3634 -1.0250 -0.0727 32 1 -0.3633 0.4496 0.9240 33 1 -0.3633 0.5756 -0.8514 34 1 1.6029 -1.7270 1.2891 35 1 1.7660 -0.1696 2.1366 36 1 3.4851 -2.1161 2.8712 37 1 5.3634 -3.1895 5.4102 38 1 5.0411 -1.7697 -0.1060 39 1 3.4986 -2.6531 -0.0084 40 1 3.9902 0.0037 -1.4318 41 1 3.6540 -1.5680 -2.1994 42 1 2.3407 -0.9995 -3.9340 43 1 2.2685 -2.6132 -3.1863 44 1 -3.4151 -2.0592 -8.0633 45 1 -3.6183 -4.3408 -7.1021 46 1 -2.0887 -5.0318 -5.3145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044858072.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:21 Heat of formation + Delta-G solvation = 135.207227 kcal Electronic energy + Delta-G solvation = -29601.424408 eV Core-core repulsion = 25529.930450 eV Total energy + Delta-G solvation = -4071.493957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.23027 -40.47663 -39.16608 -37.38129 -34.95540 -34.51776 -33.47213 -32.08649 -31.92939 -31.03158 -29.74715 -28.96996 -26.95010 -25.13627 -24.39247 -24.12074 -22.93173 -22.48448 -21.10289 -20.10741 -19.00649 -18.74022 -18.41963 -17.23912 -17.05106 -16.70126 -16.47176 -15.93277 -15.44549 -14.99557 -14.84029 -14.18730 -14.03756 -13.83866 -13.68148 -13.61938 -13.34434 -13.23120 -12.98030 -12.92130 -12.74266 -12.32571 -12.26224 -12.05697 -11.97142 -11.57178 -11.35938 -10.93211 -10.84065 -10.75682 -10.46845 -10.45396 -10.39596 -10.21658 -10.01656 -9.83107 -9.72110 -9.16351 -8.97707 -8.92848 -8.41422 -6.99256 -5.79006 -3.08246 0.00240 0.33176 1.52247 2.13318 2.63258 2.81875 3.01207 3.16983 3.41279 3.46845 3.49213 3.55145 3.83517 4.10738 4.36537 4.49408 4.55792 4.58707 4.83862 4.99964 5.06810 5.10724 5.18292 5.29143 5.36670 5.38783 5.49122 5.56978 5.62767 5.75795 5.82950 5.85360 5.89453 5.93491 6.03129 6.15284 6.27199 6.36839 6.46212 6.49329 6.54964 6.77058 6.90597 7.03156 7.04639 7.50190 7.61216 7.67589 8.22245 8.39154 9.50476 10.08182 10.42744 11.43565 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.026587 B = 0.002027 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.896756 B =13811.630389 C =14026.095255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.149 3.851 3 H 0.072 0.928 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.048 0.952 7 N -0.724 5.724 8 C -0.239 4.239 9 H 0.071 0.929 10 C -0.014 4.014 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.280 1.280 14 H -0.292 1.292 15 H -0.292 1.292 16 C -0.152 4.152 17 C 0.104 3.896 18 N -0.600 5.600 19 C 0.525 3.475 20 O -0.530 6.530 21 C -0.057 4.057 22 C 0.304 3.696 23 N -0.511 5.511 24 C 0.441 3.559 25 N -0.454 5.454 26 C 0.204 3.796 27 C -0.228 4.228 28 C 0.175 3.825 29 N -0.326 5.326 30 N -0.319 5.319 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.190 0.810 45 H 0.175 0.825 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.314 -1.657 -25.289 29.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.046 3.954 3 H 0.090 0.910 4 C -0.174 4.174 5 C 0.068 3.932 6 H 0.066 0.934 7 N -0.364 5.364 8 C -0.370 4.370 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.205 1.205 14 H -0.219 1.219 15 H -0.219 1.219 16 C -0.193 4.193 17 C -0.019 4.019 18 N -0.334 5.334 19 C 0.311 3.689 20 O -0.407 6.407 21 C -0.099 4.099 22 C 0.022 3.978 23 N -0.243 5.243 24 C 0.081 3.919 25 N -0.168 5.168 26 C 0.018 3.982 27 C -0.253 4.253 28 C 0.037 3.963 29 N -0.105 5.105 30 N -0.150 5.150 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.217 0.783 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.207 0.793 45 H 0.192 0.808 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -15.050 -0.798 -24.850 29.063 hybrid contribution 0.593 -1.125 0.709 1.456 sum -14.457 -1.923 -24.141 28.204 Atomic orbital electron populations 1.22191 0.92934 1.03603 1.00387 1.21325 0.95361 0.95039 0.83633 0.90959 1.22301 0.97551 1.00985 0.96546 1.20167 0.90912 0.94992 0.87108 0.93369 1.42440 1.12963 1.54219 1.26793 1.19280 0.89101 1.22059 1.06556 0.91070 1.24760 0.98180 0.99852 0.98238 1.69675 1.35309 1.33470 1.19553 0.86134 0.84483 0.77264 0.78393 1.20535 1.21897 1.21927 1.22683 1.01803 1.00067 0.94729 1.21928 0.79352 1.00838 0.99750 1.48136 1.07631 1.57512 1.20075 1.19913 0.86541 0.78504 0.83946 1.90788 1.15518 1.55307 1.79111 1.20191 0.93133 1.04242 0.92370 1.23550 0.95180 0.86568 0.92472 1.70681 1.10728 1.30030 1.12855 1.22723 0.94951 0.81290 0.92959 1.68003 1.04954 1.34126 1.09758 1.23586 0.91287 0.88546 0.94809 1.21952 1.03370 0.99997 0.99982 1.22190 0.85346 0.95802 0.92945 1.48787 1.22844 1.13333 1.25553 1.78582 1.03981 1.22656 1.09824 0.91240 0.93886 0.91485 0.91778 0.90612 0.78264 0.93555 0.90466 0.92094 0.91065 0.90409 0.85439 0.85805 0.79294 0.80811 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 7.59 37.16 0.28 -1.75 16 2 C 0.15 2.20 3.49 -67.60 -0.24 1.96 16 3 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.13 -2.26 4.84 -26.61 -0.13 -2.39 16 5 C 0.18 3.36 2.73 -67.89 -0.19 3.18 16 6 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 7 N -0.72 -17.63 5.12 -53.39 -0.27 -17.91 16 8 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 9 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 10 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 11 N -0.93 -27.92 13.06 55.49 0.72 -27.20 16 12 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 15 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 16 C -0.15 -2.44 5.66 -26.61 -0.15 -2.59 16 17 C 0.10 1.27 6.32 -3.71 -0.02 1.25 16 18 N -0.60 -8.31 2.97 -165.22 -0.49 -8.80 16 19 C 0.53 7.67 7.60 -10.98 -0.08 7.59 16 20 O -0.53 -9.42 11.43 5.56 0.06 -9.35 16 21 C -0.06 -0.67 4.73 -29.03 -0.14 -0.81 16 22 C 0.30 4.40 6.59 -157.02 -1.03 3.37 16 23 N -0.51 -8.03 11.25 -11.80 -0.13 -8.17 16 24 C 0.44 6.06 8.99 -323.14 -2.91 3.15 16 25 N -0.45 -4.96 10.48 -13.82 -0.14 -5.11 16 26 C 0.20 1.05 11.27 -17.08 -0.19 0.86 16 27 C -0.23 -0.76 10.06 -39.79 -0.40 -1.16 16 28 C 0.18 1.14 11.32 -16.60 -0.19 0.95 16 29 N -0.33 -3.92 3.91 -13.84 -0.05 -3.97 16 30 N -0.32 -4.58 12.78 32.39 0.41 -4.17 16 31 H 0.07 1.18 6.73 -51.94 -0.35 0.83 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.08 6.77 -51.93 -0.35 0.73 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 36 H 0.38 10.11 7.80 -40.82 -0.32 9.80 16 37 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 0.73 5.97 -51.93 -0.31 0.42 16 42 H 0.13 1.19 8.11 -51.93 -0.42 0.77 16 43 H 0.12 1.19 7.48 -51.93 -0.39 0.80 16 44 H 0.19 0.10 8.06 -52.49 -0.42 -0.32 16 45 H 0.17 -0.19 8.06 -52.48 -0.42 -0.61 16 46 H 0.18 0.59 8.06 -52.48 -0.42 0.17 16 LS Contribution 376.74 15.07 5.68 5.68 Total: -1.00 -38.16 376.74 -11.20 -49.36 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.33 Total: 6.06 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -5.63 Total: 6.52 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: 0.04 Total: -75.31 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.06 Total: -9.35 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.16 -11.20 -49.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044858072.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.566 kcal (2) G-P(sol) polarization free energy of solvation -38.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds