Wall clock time and date at job start Wed Apr 1 2020 03:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.70459 * 2 1 4 4 C 1.53198 * 109.58401 * 239.64672 * 2 1 3 5 5 C 1.53046 * 109.31270 * 185.57764 * 4 2 1 6 6 H 1.09003 * 109.44651 * 301.35684 * 5 4 2 7 7 N 1.46502 * 109.46244 * 181.38897 * 5 4 2 8 8 C 1.36937 * 120.00143 * 154.93244 * 7 5 4 9 9 H 1.08001 * 119.99747 * 0.02562 * 8 7 5 10 10 C 1.38802 * 119.99742 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99719 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00327 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47157 * 90.00151 * 12 10 8 14 14 H 1.48501 * 109.47159 * 209.99781 * 12 10 8 15 15 H 1.48494 * 109.47302 * 330.00028 * 12 10 8 16 16 C 1.53041 * 109.53646 * 61.36747 * 5 4 2 17 17 C 1.53198 * 109.31296 * 298.63596 * 16 5 4 18 18 N 1.46921 * 108.77501 * 54.63276 * 17 16 5 19 19 C 1.34777 * 120.62828 * 126.11567 * 18 17 16 20 20 O 1.21288 * 119.99793 * 174.22659 * 19 18 17 21 21 C 1.50699 * 120.00049 * 354.22547 * 19 18 17 22 22 C 1.50703 * 109.47131 * 179.97438 * 21 19 18 23 23 N 1.32612 * 125.18432 * 269.69533 * 22 21 19 24 24 C 1.32833 * 109.75823 * 179.88235 * 23 22 21 25 25 N 1.33808 * 132.50565 * 180.10670 * 24 23 22 26 26 C 1.31353 * 120.86518 * 180.28959 * 25 24 23 27 27 C 1.40038 * 120.31208 * 0.02562 * 26 25 24 28 28 C 1.35774 * 119.24115 * 359.97438 * 27 26 25 29 29 N 1.35976 * 119.02050 * 0.02562 * 28 27 26 30 30 N 1.31180 * 125.18535 * 89.99858 * 22 21 19 31 31 H 1.08997 * 109.46916 * 305.36710 * 1 2 3 32 32 H 1.09001 * 109.46970 * 65.36520 * 1 2 3 33 33 H 1.08994 * 109.47246 * 185.36431 * 1 2 3 34 34 H 1.08998 * 109.49530 * 65.63258 * 4 2 1 35 35 H 1.08990 * 109.53075 * 305.54643 * 4 2 1 36 36 H 0.96996 * 119.99442 * 334.93583 * 7 5 4 37 37 H 0.97001 * 120.00201 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.49639 * 178.68243 * 16 5 4 39 39 H 1.08997 * 109.52412 * 58.60305 * 16 5 4 40 40 H 1.09000 * 109.58652 * 294.84791 * 17 16 5 41 41 H 1.08995 * 109.70141 * 174.49340 * 17 16 5 42 42 H 1.09000 * 109.47490 * 299.99663 * 21 19 18 43 43 H 1.09004 * 109.46891 * 60.00144 * 21 19 18 44 44 H 1.08007 * 119.84323 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.38041 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.49165 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0434 -0.7294 -1.2455 5 6 3.5674 -0.8480 -1.1703 6 1 4.0059 0.1474 -1.0992 7 7 4.0652 -1.5157 -2.3756 8 6 5.3492 -1.2976 -2.7984 9 1 5.9951 -0.6336 -2.2431 10 6 5.8205 -1.9298 -3.9407 11 7 7.0549 -1.7205 -4.3469 12 14 4.7035 -3.0786 -4.9008 13 1 3.9677 -2.3053 -5.9332 14 1 5.5215 -4.1290 -5.5587 15 1 3.7334 -3.7148 -3.9739 16 6 3.9568 -1.6658 0.0633 17 6 3.4650 -0.9472 1.3236 18 7 2.0226 -0.6997 1.1944 19 6 1.1668 -1.1117 2.1506 20 8 -0.0064 -0.8109 2.0850 21 6 1.6676 -1.9460 3.3013 22 6 0.5203 -2.2709 4.2229 23 7 0.1421 -1.5367 5.2605 24 6 -0.9006 -2.1045 5.8561 25 7 -1.6323 -1.7583 6.9216 26 6 -2.6328 -2.5080 7.3245 27 6 -2.9510 -3.6885 6.6417 28 6 -2.2142 -4.0479 5.5594 29 7 -1.1850 -3.2503 5.1677 30 7 -0.2529 -3.3260 4.1244 31 1 -0.3633 0.5948 0.8380 32 1 -0.3633 0.4284 -0.9341 33 1 -0.3633 -1.0231 0.0961 34 1 1.7660 -0.1667 -2.1368 35 1 1.6029 -1.7252 -1.2921 36 1 3.4851 -2.1122 -2.8741 37 1 7.3844 -2.1626 -5.1449 38 1 5.0412 -1.7698 0.1034 39 1 3.4987 -2.6531 0.0053 40 1 3.9903 0.0018 1.4316 41 1 3.6520 -1.5699 2.1984 42 1 2.0998 -2.8706 2.9188 43 1 2.4274 -1.3894 3.8500 44 1 -3.2127 -2.2126 8.1865 45 1 -3.7732 -4.3060 6.9723 46 1 -2.4417 -4.9544 5.0181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044858073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:25 Heat of formation + Delta-G solvation = 138.362815 kcal Electronic energy + Delta-G solvation = -29683.379268 eV Core-core repulsion = 25612.022147 eV Total energy + Delta-G solvation = -4071.357121 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.25933 -40.54204 -39.20060 -37.50124 -34.98595 -34.67404 -33.52494 -32.14104 -31.96823 -31.06214 -30.02730 -29.28935 -27.10104 -25.17068 -24.46061 -24.14600 -22.76113 -22.48927 -21.09983 -20.19620 -19.10200 -18.77576 -18.45832 -17.60792 -17.18779 -16.73785 -16.52994 -16.06175 -15.41171 -15.04026 -14.83779 -14.24489 -14.21203 -13.95253 -13.78036 -13.59500 -13.42639 -13.25436 -13.01594 -12.95762 -12.61329 -12.40129 -12.34423 -12.28825 -12.02109 -11.85448 -11.47117 -11.02654 -10.97034 -10.84702 -10.55663 -10.49588 -10.42253 -10.30623 -10.05688 -9.92260 -9.62191 -9.19328 -9.06732 -8.95744 -8.50170 -7.31350 -5.80233 -3.16142 -0.02570 0.30320 1.49188 2.09990 2.57068 2.78730 2.97758 3.12453 3.35542 3.38927 3.43658 3.51780 3.80684 4.07661 4.33827 4.44691 4.55200 4.56405 4.80890 4.95937 4.96715 5.04186 5.06492 5.15845 5.26548 5.35569 5.40970 5.51168 5.55277 5.72499 5.73861 5.78034 5.84420 5.86897 5.90592 6.01962 6.05426 6.25539 6.31960 6.37079 6.43204 6.65928 6.79445 6.92985 7.00482 7.43415 7.58274 7.95302 8.16007 8.38849 9.16975 9.89855 10.09551 11.37884 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.002144 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.218196 B =13056.181285 C =13214.810221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.150 3.850 3 H 0.075 0.925 4 C -0.139 4.139 5 C 0.183 3.817 6 H 0.058 0.942 7 N -0.748 5.748 8 C -0.244 4.244 9 H 0.091 0.909 10 C 0.005 3.995 11 N -0.933 5.933 12 Si 0.884 3.116 13 H -0.284 1.284 14 H -0.291 1.291 15 H -0.278 1.278 16 C -0.152 4.152 17 C 0.104 3.896 18 N -0.601 5.601 19 C 0.526 3.474 20 O -0.530 6.530 21 C -0.057 4.057 22 C 0.304 3.696 23 N -0.511 5.511 24 C 0.442 3.558 25 N -0.454 5.454 26 C 0.204 3.796 27 C -0.227 4.227 28 C 0.175 3.825 29 N -0.326 5.326 30 N -0.320 5.320 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.077 0.923 35 H 0.062 0.938 36 H 0.361 0.639 37 H 0.259 0.741 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.125 0.875 43 H 0.128 0.872 44 H 0.190 0.810 45 H 0.175 0.825 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.345 -4.257 24.280 31.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 H 0.093 0.907 4 C -0.178 4.178 5 C 0.073 3.927 6 H 0.076 0.924 7 N -0.390 5.390 8 C -0.374 4.374 9 H 0.109 0.891 10 C -0.191 4.191 11 N -0.580 5.580 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.218 1.218 15 H -0.204 1.204 16 C -0.193 4.193 17 C -0.019 4.019 18 N -0.335 5.335 19 C 0.312 3.688 20 O -0.407 6.407 21 C -0.100 4.100 22 C 0.022 3.978 23 N -0.243 5.243 24 C 0.081 3.919 25 N -0.168 5.168 26 C 0.018 3.982 27 C -0.253 4.253 28 C 0.037 3.963 29 N -0.105 5.105 30 N -0.151 5.151 31 H 0.094 0.906 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.193 0.807 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.207 0.793 45 H 0.192 0.808 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -19.920 -3.351 23.939 31.323 hybrid contribution -0.992 -1.839 -1.049 2.338 sum -20.913 -5.189 22.890 31.436 Atomic orbital electron populations 1.22184 0.92953 1.03340 1.00892 1.21282 0.95325 0.95273 0.83398 0.90714 1.22353 0.97557 1.00960 0.96946 1.20144 0.90739 0.95425 0.86352 0.92424 1.42797 1.13224 1.54809 1.28145 1.19061 0.87695 1.23313 1.07288 0.89127 1.24674 0.96110 1.00106 0.98230 1.69699 1.15077 1.47159 1.26113 0.86562 0.80333 0.81287 0.80393 1.21099 1.21788 1.20378 1.22655 1.02289 0.99784 0.94614 1.21940 0.79241 1.01096 0.99606 1.48160 1.07625 1.57425 1.20290 1.19917 0.86108 0.80050 0.82720 1.90774 1.17172 1.56582 1.76218 1.20186 0.93481 1.02961 0.93327 1.23547 0.94879 0.87522 0.91834 1.70687 1.12811 1.29635 1.11135 1.22723 0.94024 0.83814 0.91329 1.68005 1.07053 1.31370 1.10380 1.23590 0.89701 0.88333 0.96590 1.21952 1.04308 1.01343 0.97656 1.22184 0.84227 0.95352 0.94560 1.48787 1.21882 1.18543 1.21306 1.78575 1.05162 1.24664 1.06714 0.90604 0.93721 0.92034 0.90480 0.91914 0.80658 0.93054 0.89973 0.92197 0.90767 0.90223 0.85732 0.85403 0.79274 0.80805 0.80032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.61 37.15 0.28 -1.67 16 2 C 0.15 2.09 3.49 -67.60 -0.24 1.86 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 4 C -0.14 -2.15 4.84 -26.61 -0.13 -2.28 16 5 C 0.18 3.27 2.73 -67.88 -0.19 3.08 16 6 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 7 N -0.75 -16.97 4.92 -53.38 -0.26 -17.23 16 8 C -0.24 -6.62 10.41 -15.06 -0.16 -6.78 16 9 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 10 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 11 N -0.93 -28.80 13.97 55.49 0.78 -28.03 16 12 Si 0.88 21.88 27.73 -169.99 -4.71 17.17 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 15 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 16 C -0.15 -2.33 5.66 -26.61 -0.15 -2.48 16 17 C 0.10 1.22 6.35 -3.71 -0.02 1.20 16 18 N -0.60 -7.96 2.97 -165.22 -0.49 -8.45 16 19 C 0.53 7.41 7.49 -10.99 -0.08 7.32 16 20 O -0.53 -9.09 11.60 5.55 0.06 -9.03 16 21 C -0.06 -0.66 4.68 -29.03 -0.14 -0.79 16 22 C 0.30 4.31 6.59 -157.01 -1.03 3.28 16 23 N -0.51 -7.90 11.25 -11.80 -0.13 -8.04 16 24 C 0.44 5.96 8.99 -323.14 -2.91 3.05 16 25 N -0.45 -4.87 10.48 -13.82 -0.14 -5.01 16 26 C 0.20 1.01 11.27 -17.08 -0.19 0.82 16 27 C -0.23 -0.71 10.06 -39.79 -0.40 -1.11 16 28 C 0.17 1.09 11.32 -16.60 -0.19 0.90 16 29 N -0.33 -3.82 3.91 -13.84 -0.05 -3.88 16 30 N -0.32 -4.49 12.78 32.39 0.41 -4.07 16 31 H 0.08 1.18 6.54 -51.93 -0.34 0.84 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.98 6.95 -51.93 -0.36 0.61 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.36 8.20 5.66 -40.82 -0.23 7.97 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.71 5.92 -51.93 -0.31 0.41 16 42 H 0.12 1.17 7.93 -51.93 -0.41 0.76 16 43 H 0.13 1.16 7.70 -51.93 -0.40 0.76 16 44 H 0.19 0.07 8.06 -52.48 -0.42 -0.36 16 45 H 0.17 -0.23 8.06 -52.48 -0.42 -0.65 16 46 H 0.18 0.54 8.06 -52.49 -0.42 0.11 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -38.80 373.68 -10.84 -49.64 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -6.29 Total: 4.86 kcal Atomic # 6 Polarization: 12.07 SS G_CDS: -5.63 Total: 6.43 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: 0.10 Total: -74.71 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.06 Total: -9.03 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.71 Total: 17.17 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -38.80 -10.84 -49.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044858073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.005 kcal (2) G-P(sol) polarization free energy of solvation -38.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds