Wall clock time and date at job start Wed Apr 1 2020 03:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.70459 * 2 1 4 4 C 1.53198 * 109.58401 * 239.64672 * 2 1 3 5 5 C 1.53046 * 109.31270 * 185.57764 * 4 2 1 6 6 H 1.09003 * 109.44651 * 301.35684 * 5 4 2 7 7 N 1.46502 * 109.46244 * 181.38897 * 5 4 2 8 8 C 1.36937 * 120.00143 * 154.93244 * 7 5 4 9 9 H 1.08001 * 119.99747 * 0.02562 * 8 7 5 10 10 C 1.38802 * 119.99742 * 180.02562 * 8 7 5 11 11 N 1.31621 * 119.99719 * 180.02562 * 10 8 7 12 12 Si 1.86795 * 120.00327 * 359.97438 * 10 8 7 13 13 H 1.48504 * 109.47157 * 90.00151 * 12 10 8 14 14 H 1.48501 * 109.47159 * 209.99781 * 12 10 8 15 15 H 1.48494 * 109.47302 * 330.00028 * 12 10 8 16 16 C 1.53041 * 109.53646 * 61.36747 * 5 4 2 17 17 C 1.53198 * 109.31296 * 298.63596 * 16 5 4 18 18 N 1.46921 * 108.77501 * 54.63276 * 17 16 5 19 19 C 1.34777 * 120.62828 * 126.11567 * 18 17 16 20 20 O 1.21288 * 119.99793 * 174.22659 * 19 18 17 21 21 C 1.50699 * 120.00049 * 354.22547 * 19 18 17 22 22 C 1.50703 * 109.47131 * 179.97438 * 21 19 18 23 23 N 1.32612 * 125.18432 * 269.69533 * 22 21 19 24 24 C 1.32833 * 109.75823 * 179.88235 * 23 22 21 25 25 N 1.33808 * 132.50565 * 180.10670 * 24 23 22 26 26 C 1.31353 * 120.86518 * 180.28959 * 25 24 23 27 27 C 1.40038 * 120.31208 * 0.02562 * 26 25 24 28 28 C 1.35774 * 119.24115 * 359.97438 * 27 26 25 29 29 N 1.35976 * 119.02050 * 0.02562 * 28 27 26 30 30 N 1.31180 * 125.18535 * 89.99858 * 22 21 19 31 31 H 1.08997 * 109.46916 * 305.36710 * 1 2 3 32 32 H 1.09001 * 109.46970 * 65.36520 * 1 2 3 33 33 H 1.08994 * 109.47246 * 185.36431 * 1 2 3 34 34 H 1.08998 * 109.49530 * 65.63258 * 4 2 1 35 35 H 1.08990 * 109.53075 * 305.54643 * 4 2 1 36 36 H 0.96996 * 119.99442 * 334.93583 * 7 5 4 37 37 H 0.97001 * 120.00201 * 179.97438 * 11 10 8 38 38 H 1.09001 * 109.49639 * 178.68243 * 16 5 4 39 39 H 1.08997 * 109.52412 * 58.60305 * 16 5 4 40 40 H 1.09000 * 109.58652 * 294.84791 * 17 16 5 41 41 H 1.08995 * 109.70141 * 174.49340 * 17 16 5 42 42 H 1.09000 * 109.47490 * 299.99663 * 21 19 18 43 43 H 1.09004 * 109.46891 * 60.00144 * 21 19 18 44 44 H 1.08007 * 119.84323 * 180.02562 * 26 25 24 45 45 H 1.08005 * 120.38041 * 179.97438 * 27 26 25 46 46 H 1.07998 * 120.49165 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0434 -0.7294 -1.2455 5 6 3.5674 -0.8480 -1.1703 6 1 4.0059 0.1474 -1.0992 7 7 4.0652 -1.5157 -2.3756 8 6 5.3492 -1.2976 -2.7984 9 1 5.9951 -0.6336 -2.2431 10 6 5.8205 -1.9298 -3.9407 11 7 7.0549 -1.7205 -4.3469 12 14 4.7035 -3.0786 -4.9008 13 1 3.9677 -2.3053 -5.9332 14 1 5.5215 -4.1290 -5.5587 15 1 3.7334 -3.7148 -3.9739 16 6 3.9568 -1.6658 0.0633 17 6 3.4650 -0.9472 1.3236 18 7 2.0226 -0.6997 1.1944 19 6 1.1668 -1.1117 2.1506 20 8 -0.0064 -0.8109 2.0850 21 6 1.6676 -1.9460 3.3013 22 6 0.5203 -2.2709 4.2229 23 7 0.1421 -1.5367 5.2605 24 6 -0.9006 -2.1045 5.8561 25 7 -1.6323 -1.7583 6.9216 26 6 -2.6328 -2.5080 7.3245 27 6 -2.9510 -3.6885 6.6417 28 6 -2.2142 -4.0479 5.5594 29 7 -1.1850 -3.2503 5.1677 30 7 -0.2529 -3.3260 4.1244 31 1 -0.3633 0.5948 0.8380 32 1 -0.3633 0.4284 -0.9341 33 1 -0.3633 -1.0231 0.0961 34 1 1.7660 -0.1667 -2.1368 35 1 1.6029 -1.7252 -1.2921 36 1 3.4851 -2.1122 -2.8741 37 1 7.3844 -2.1626 -5.1449 38 1 5.0412 -1.7698 0.1034 39 1 3.4987 -2.6531 0.0053 40 1 3.9903 0.0018 1.4316 41 1 3.6520 -1.5699 2.1984 42 1 2.0998 -2.8706 2.9188 43 1 2.4274 -1.3894 3.8500 44 1 -3.2127 -2.2126 8.1865 45 1 -3.7732 -4.3060 6.9723 46 1 -2.4417 -4.9544 5.0181 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044858073.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:24 Heat of formation + Delta-G solvation = 112.153146 kcal Electronic energy + Delta-G solvation = -29684.515805 eV Core-core repulsion = 25612.022147 eV Total energy + Delta-G solvation = -4072.493657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.99606 -41.63631 -39.88025 -38.77833 -36.29240 -35.65613 -34.54681 -33.82974 -32.96199 -31.80852 -31.56853 -30.26350 -28.35028 -25.99640 -25.68311 -24.92764 -24.26192 -23.55248 -22.14131 -21.60264 -20.26774 -19.52982 -19.41903 -19.11527 -18.15506 -17.45556 -17.29088 -16.98311 -16.70921 -16.45108 -15.92833 -15.56424 -15.19313 -15.18293 -14.89147 -14.58266 -14.46454 -14.41736 -14.12454 -13.86748 -13.74704 -13.71164 -13.46905 -13.19067 -13.09411 -13.00488 -12.95566 -12.70823 -12.57950 -12.13026 -12.03137 -11.92868 -11.77278 -11.37616 -11.36800 -11.02004 -10.92851 -10.76309 -10.19370 -9.91094 -9.63434 -9.29181 -7.99938 -5.32610 -0.50489 -0.33214 0.86302 1.29366 1.38691 1.40536 1.47709 1.52533 1.95277 2.26281 2.39692 2.49579 2.80067 3.31151 3.36238 3.45248 3.50437 3.52059 3.86418 3.94633 4.01019 4.07329 4.13362 4.24089 4.26358 4.33030 4.40080 4.53215 4.56163 4.59662 4.61913 4.78470 4.80400 4.85527 5.00016 5.02503 5.06037 5.08126 5.13327 5.24128 5.37166 5.38643 5.50495 5.67914 5.80723 6.24234 6.37269 6.38479 6.79078 7.09681 7.10095 7.86961 8.05016 9.21324 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023619 B = 0.002144 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.218196 B =13056.181285 C =13214.810221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.152 3.848 3 H 0.085 0.915 4 C -0.127 4.127 5 C 0.175 3.825 6 H 0.050 0.950 7 N -0.753 5.753 8 C -0.221 4.221 9 H 0.063 0.937 10 C -0.065 4.065 11 N -0.983 5.983 12 Si 0.950 3.050 13 H -0.282 1.282 14 H -0.299 1.299 15 H -0.255 1.255 16 C -0.143 4.143 17 C 0.110 3.890 18 N -0.600 5.600 19 C 0.525 3.475 20 O -0.564 6.564 21 C -0.053 4.053 22 C 0.288 3.712 23 N -0.559 5.559 24 C 0.420 3.580 25 N -0.497 5.497 26 C 0.213 3.787 27 C -0.189 4.189 28 C 0.143 3.857 29 N -0.333 5.333 30 N -0.350 5.350 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.362 0.638 37 H 0.256 0.744 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.240 0.760 45 H 0.232 0.768 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.434 -5.740 26.605 35.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 H 0.103 0.897 4 C -0.166 4.166 5 C 0.067 3.933 6 H 0.068 0.932 7 N -0.395 5.395 8 C -0.352 4.352 9 H 0.081 0.919 10 C -0.257 4.257 11 N -0.634 5.634 12 Si 0.779 3.221 13 H -0.208 1.208 14 H -0.226 1.226 15 H -0.180 1.180 16 C -0.184 4.184 17 C -0.012 4.012 18 N -0.333 5.333 19 C 0.313 3.687 20 O -0.444 6.444 21 C -0.095 4.095 22 C 0.007 3.993 23 N -0.292 5.292 24 C 0.060 3.940 25 N -0.214 5.214 26 C 0.030 3.970 27 C -0.213 4.213 28 C 0.007 3.993 29 N -0.112 5.112 30 N -0.183 5.183 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.195 0.805 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.133 0.867 42 H 0.163 0.837 43 H 0.168 0.832 44 H 0.256 0.744 45 H 0.249 0.751 46 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -23.090 -4.855 26.340 35.362 hybrid contribution -0.248 -1.367 -1.530 2.067 sum -23.338 -6.222 24.810 34.625 Atomic orbital electron populations 1.21998 0.93072 1.02000 1.00942 1.21226 0.95080 0.95667 0.83103 0.89692 1.22202 0.95445 1.01027 0.97880 1.20406 0.92242 0.95012 0.85632 0.93164 1.42842 1.11619 1.55219 1.29809 1.19028 0.88901 1.21137 1.06126 0.91926 1.25437 0.97612 1.02710 0.99905 1.69872 1.17329 1.49239 1.26976 0.85474 0.78605 0.78980 0.79067 1.20811 1.22580 1.17993 1.22448 1.01377 0.99579 0.95004 1.22004 0.78202 1.02046 0.98952 1.48189 1.08131 1.57082 1.19907 1.20330 0.85620 0.79658 0.83125 1.90761 1.18716 1.57819 1.77119 1.20273 0.93357 1.03610 0.92221 1.23843 0.95618 0.87689 0.92162 1.70550 1.14788 1.31431 1.12479 1.22927 0.94343 0.84497 0.92217 1.68111 1.09183 1.33569 1.10489 1.24651 0.87591 0.87822 0.96939 1.22673 1.03574 1.00234 0.94825 1.23133 0.83625 0.96278 0.96225 1.48852 1.22628 1.19043 1.20718 1.78371 1.06220 1.25315 1.08375 0.91957 0.92412 0.93792 0.90404 0.92259 0.80477 0.93528 0.91429 0.92394 0.89480 0.86731 0.83689 0.83158 0.74437 0.75138 0.77212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.46 7.61 71.98 0.55 -2.91 16 2 C 0.15 4.08 3.49 44.97 0.16 4.24 16 3 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 4 C -0.13 -3.77 4.84 30.68 0.15 -3.62 16 5 C 0.17 6.11 2.73 45.02 0.12 6.23 16 6 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 7 N -0.75 -33.70 4.92 -322.80 -1.59 -35.29 16 8 C -0.22 -12.14 10.41 84.03 0.87 -11.27 16 9 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 10 C -0.07 -3.80 5.50 84.86 0.47 -3.33 16 11 N -0.98 -62.35 13.97 21.65 0.30 -62.05 16 12 Si 0.95 45.43 27.73 68.60 1.90 47.33 16 13 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 14 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 15 H -0.26 -11.09 6.52 99.48 0.65 -10.44 16 16 C -0.14 -4.21 5.66 30.67 0.17 -4.04 16 17 C 0.11 2.36 6.35 86.37 0.55 2.91 16 18 N -0.60 -15.08 2.97 -795.03 -2.36 -17.44 16 19 C 0.53 14.47 7.49 87.66 0.66 15.13 16 20 O -0.56 -19.63 11.60 -3.05 -0.04 -19.66 16 21 C -0.05 -1.17 4.68 29.10 0.14 -1.04 16 22 C 0.29 8.34 6.59 138.69 0.91 9.25 16 23 N -0.56 -17.85 11.25 -191.25 -2.15 -20.00 16 24 C 0.42 11.44 8.99 261.60 2.35 13.79 16 25 N -0.50 -10.17 10.48 -197.64 -2.07 -12.24 16 26 C 0.21 1.35 11.27 85.20 0.96 2.31 16 27 C -0.19 -0.33 10.06 22.14 0.22 -0.11 16 28 C 0.14 1.43 11.32 83.48 0.94 2.38 16 29 N -0.33 -7.69 3.91 -197.71 -0.77 -8.46 16 30 N -0.35 -9.96 12.78 -51.45 -0.66 -10.62 16 31 H 0.06 1.94 6.54 -2.39 -0.02 1.93 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 1.39 6.95 -2.39 -0.02 1.37 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.36 15.96 5.66 -92.71 -0.52 15.43 16 37 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.11 1.71 5.92 -2.39 -0.01 1.70 16 42 H 0.15 2.50 7.93 -2.39 -0.02 2.48 16 43 H 0.15 2.52 7.70 -2.39 -0.02 2.50 16 44 H 0.24 -1.09 8.06 -2.91 -0.02 -1.12 16 45 H 0.23 -2.26 8.06 -2.91 -0.02 -2.29 16 46 H 0.21 0.64 8.06 -2.91 -0.02 0.62 16 Total: -1.00 -91.41 373.68 2.23 -89.18 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.43 Total: 19.32 kcal Atomic # 6 Polarization: 20.70 SS G_CDS: 9.23 Total: 29.93 kcal Atomic # 7 Polarization: -156.80 SS G_CDS: -9.30 Total: -166.10 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.04 Total: -19.66 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.90 Total: 47.33 kcal Total: -91.41 2.23 -89.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044858073.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.333 kcal (2) G-P(sol) polarization free energy of solvation -91.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds