Wall clock time and date at job start Wed Apr 1 2020 02:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46669 * 2 1 4 4 H 1.09001 * 109.99937 * 307.03337 * 3 2 1 5 5 C 1.54326 * 109.87994 * 185.93641 * 3 2 1 6 6 H 1.09003 * 110.87445 * 336.82326 * 5 3 2 7 7 N 1.46505 * 110.71895 * 100.02852 * 5 3 2 8 8 C 1.34770 * 119.99661 * 199.97571 * 7 5 3 9 9 O 1.21575 * 120.00572 * 359.97438 * 8 7 5 10 10 C 1.47717 * 120.00086 * 179.97438 * 8 7 5 11 11 C 1.40119 * 120.35311 * 359.97438 * 10 8 7 12 12 N 1.31255 * 121.15646 * 180.02562 * 11 10 8 13 13 C 1.32723 * 121.79956 * 359.97438 * 12 11 10 14 14 C 1.40781 * 120.67865 * 359.74126 * 13 12 11 15 15 C 1.39437 * 120.35638 * 179.97438 * 10 8 7 16 16 N 1.35334 * 107.75726 * 179.81872 * 14 13 12 17 17 N 1.28666 * 109.99474 * 0.39135 * 16 14 13 18 18 N 1.37116 * 133.40702 * 180.02562 * 13 12 11 19 19 C 1.46498 * 126.58849 * 0.02562 * 18 13 12 20 20 C 1.55157 * 102.94283 * 218.38904 * 5 3 2 21 21 C 1.54913 * 101.58151 * 35.50134 * 20 5 3 22 22 N 1.47018 * 109.88419 * 68.12856 * 3 2 1 23 23 C 1.36940 * 125.65075 * 298.39277 * 22 3 2 24 24 H 1.07998 * 119.99491 * 334.93591 * 23 22 3 25 25 C 1.38804 * 120.00223 * 154.93921 * 23 22 3 26 26 N 1.31618 * 120.00196 * 159.56290 * 25 23 22 27 27 Si 1.86805 * 120.00155 * 339.55853 * 25 23 22 28 28 H 1.48490 * 109.47154 * 84.87626 * 27 25 23 29 29 H 1.48495 * 109.47174 * 204.87887 * 27 25 23 30 30 H 1.48505 * 109.46915 * 324.87450 * 27 25 23 31 31 H 1.08999 * 109.47580 * 292.17899 * 1 2 3 32 32 H 1.09002 * 109.47336 * 52.18671 * 1 2 3 33 33 H 1.09007 * 109.46837 * 172.18240 * 1 2 3 34 34 H 1.08993 * 109.47763 * 240.00101 * 2 1 3 35 35 H 1.09000 * 109.46987 * 119.99597 * 2 1 3 36 36 H 0.96992 * 119.99873 * 19.97675 * 7 5 3 37 37 H 1.08011 * 119.42081 * 0.03850 * 11 10 8 38 38 H 1.07995 * 120.94652 * 359.95994 * 15 10 8 39 39 H 1.08992 * 109.47448 * 89.99871 * 19 18 13 40 40 H 1.09005 * 109.47075 * 210.00011 * 19 18 13 41 41 H 1.09006 * 109.47429 * 329.99793 * 19 18 13 42 42 H 1.08991 * 111.00797 * 153.57487 * 20 5 3 43 43 H 1.09002 * 111.00425 * 277.43369 * 20 5 3 44 44 H 1.08997 * 110.36539 * 81.83309 * 21 20 5 45 45 H 1.09000 * 110.36423 * 204.15460 * 21 20 5 46 46 H 0.97003 * 120.00084 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5825 1.9996 -0.8177 5 6 3.5758 1.4563 -0.1501 6 1 4.0066 0.5102 0.1779 7 7 3.9587 1.7459 -1.5342 8 6 5.1890 1.4174 -1.9758 9 8 5.9812 0.8813 -1.2254 10 6 5.5750 1.7089 -3.3715 11 6 4.6678 2.3260 -4.2429 12 7 4.9939 2.5918 -5.4862 13 6 6.1908 2.2913 -5.9748 14 6 7.1634 1.6753 -5.1645 15 6 6.8460 1.3728 -3.8359 16 7 8.2704 1.4863 -5.9198 17 7 8.0727 1.9338 -7.1098 18 7 6.7750 2.4555 -7.2044 19 6 6.1610 3.0604 -8.3890 20 6 4.0067 2.6115 0.7918 21 6 2.9807 2.4724 1.9441 22 7 1.7209 2.0856 1.2830 23 6 0.4623 2.2907 1.7819 24 1 -0.3804 2.3591 1.1098 25 6 0.2694 2.4107 3.1512 26 7 -0.8165 2.9925 3.6144 27 14 1.5512 1.7465 4.3368 28 1 2.6136 2.7642 4.5383 29 1 0.9080 1.4378 5.6391 30 1 2.1508 0.5094 3.7753 31 1 -0.3634 0.3879 0.9516 32 1 -0.3634 0.6301 -0.8119 33 1 -0.3633 -1.0182 -0.1398 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.3269 2.1739 -2.1328 37 1 3.6828 2.5879 -3.8852 38 1 7.5665 0.8970 -3.1872 39 1 6.3586 4.1322 -8.3935 40 1 6.5829 2.6094 -9.2872 41 1 5.0847 2.8894 -8.3679 42 1 5.0236 2.4616 1.1541 43 1 3.9086 3.5772 0.2959 44 1 3.2967 1.6970 2.6418 45 1 2.8607 3.4240 2.4620 46 1 -0.9511 3.0767 4.5714 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087659867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:51 Heat of formation + Delta-G solvation = 125.568863 kcal Electronic energy + Delta-G solvation = -29739.309316 eV Core-core repulsion = 25667.397408 eV Total energy + Delta-G solvation = -4071.911908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.78705 -40.34691 -38.85589 -37.88615 -35.33937 -34.43508 -32.66035 -32.58605 -32.23537 -31.14547 -29.35486 -28.19029 -27.23539 -25.46677 -24.76478 -23.94788 -22.21857 -21.92412 -21.55997 -20.57659 -19.80650 -18.76238 -18.28716 -17.39975 -16.93125 -16.88378 -16.51392 -15.96623 -15.12878 -15.06195 -14.73126 -14.47285 -14.14043 -13.98317 -13.74142 -13.59433 -13.46002 -13.41141 -13.14353 -12.91580 -12.87624 -12.50155 -12.25966 -12.13945 -11.93869 -11.50486 -11.41136 -11.14485 -10.94035 -10.70991 -10.53343 -10.41570 -10.35580 -10.10063 -9.95202 -9.83505 -9.73874 -9.39909 -9.39208 -8.95596 -8.63828 -7.05879 -6.00091 -3.34712 -0.23946 0.19395 1.30436 1.62191 2.49830 2.83909 3.29484 3.30572 3.33824 3.47438 3.49812 3.65813 3.82486 4.07773 4.17108 4.43002 4.51320 4.58323 4.73319 4.87228 4.90730 4.92045 5.08504 5.15668 5.24940 5.27438 5.37780 5.53681 5.62988 5.75279 5.83121 5.87447 5.87793 6.03675 6.10509 6.23763 6.33663 6.47789 6.56330 6.58151 6.68366 6.70955 6.96866 6.99344 7.26727 7.33890 7.38767 7.72081 8.04519 8.27039 8.77746 9.62918 10.12676 11.15244 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.023750 B = 0.002331 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.668023 B =12011.459631 C =12459.171161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C 0.158 3.842 4 H 0.047 0.953 5 C 0.134 3.866 6 H 0.099 0.901 7 N -0.707 5.707 8 C 0.569 3.431 9 O -0.530 6.530 10 C -0.204 4.204 11 C 0.213 3.787 12 N -0.486 5.486 13 C 0.287 3.713 14 C -0.075 4.075 15 C 0.083 3.917 16 N -0.196 5.196 17 N 0.010 4.990 18 N -0.385 5.385 19 C 0.100 3.900 20 C -0.141 4.141 21 C 0.114 3.886 22 N -0.598 5.598 23 C -0.236 4.236 24 H 0.094 0.906 25 C 0.026 3.974 26 N -0.906 5.906 27 Si 0.880 3.120 28 H -0.285 1.285 29 H -0.303 1.303 30 H -0.274 1.274 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.399 0.601 37 H 0.180 0.820 38 H 0.166 0.834 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.099 0.901 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.026 0.974 45 H 0.061 0.939 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.023 -0.630 -21.512 24.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C 0.051 3.949 4 H 0.065 0.935 5 C 0.030 3.970 6 H 0.117 0.883 7 N -0.358 5.358 8 C 0.354 3.646 9 O -0.407 6.407 10 C -0.213 4.213 11 C 0.039 3.961 12 N -0.199 5.199 13 C 0.043 3.957 14 C -0.200 4.200 15 C 0.052 3.948 16 N -0.076 5.076 17 N 0.029 4.971 18 N -0.181 5.181 19 C -0.040 4.040 20 C -0.180 4.180 21 C -0.011 4.011 22 N -0.324 5.324 23 C -0.363 4.363 24 H 0.112 0.888 25 C -0.173 4.173 26 N -0.549 5.549 27 Si 0.711 3.289 28 H -0.212 1.212 29 H -0.231 1.231 30 H -0.200 1.200 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.235 0.765 37 H 0.197 0.803 38 H 0.184 0.816 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.125 -0.766 -22.279 25.869 hybrid contribution -0.048 -0.276 1.310 1.340 sum 13.077 -1.042 -20.969 24.734 Atomic orbital electron populations 1.21918 0.95337 0.99323 1.04406 1.21918 0.97275 0.97225 1.00104 1.21208 0.89814 0.92782 0.91131 0.93512 1.22194 0.96192 0.99341 0.79300 0.88349 1.45925 1.14252 1.61649 1.13995 1.17653 0.82391 0.78843 0.85689 1.90818 1.50602 1.42630 1.56676 1.20809 0.96081 1.07744 0.96685 1.23112 0.98698 0.88288 0.86028 1.66652 1.15621 1.22118 1.15540 1.19560 0.91910 0.96738 0.87446 1.20383 0.92783 1.09735 0.97125 1.21086 0.94840 0.88193 0.90632 1.74889 1.21302 1.13381 0.98024 1.81777 0.93601 1.09093 1.12625 1.50012 1.11104 1.47895 1.09084 1.22116 0.99203 0.98819 0.83890 1.23143 0.99208 0.98266 0.97381 1.21943 0.86245 0.98785 0.94153 1.44760 1.01901 1.66702 1.19078 1.18534 0.83203 1.43685 0.90833 0.88810 1.25144 0.96160 0.99310 0.96706 1.69806 1.27993 1.43544 1.13598 0.86967 0.81178 0.80294 0.80509 1.21198 1.23095 1.19981 0.88935 0.93956 0.94920 0.93789 0.92339 0.76542 0.80315 0.81616 0.89643 0.88272 0.88220 0.91117 0.90851 0.95621 0.92043 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.10 37.16 0.34 -2.34 16 2 C -0.13 -2.11 5.44 -26.73 -0.15 -2.26 16 3 C 0.16 2.70 2.97 -66.95 -0.20 2.50 16 4 H 0.05 0.76 7.67 -51.93 -0.40 0.36 16 5 C 0.13 2.01 2.76 -66.09 -0.18 1.82 16 6 H 0.10 1.60 7.41 -51.93 -0.38 1.22 16 7 N -0.71 -8.04 5.16 -53.01 -0.27 -8.31 16 8 C 0.57 6.86 7.77 -12.39 -0.10 6.76 16 9 O -0.53 -8.28 16.12 5.30 0.09 -8.19 16 10 C -0.20 -1.99 5.88 -104.87 -0.62 -2.61 16 11 C 0.21 1.73 10.69 -17.09 -0.18 1.55 16 12 N -0.49 -4.62 10.37 -12.03 -0.12 -4.74 16 13 C 0.29 2.99 8.05 -155.93 -1.26 1.73 16 14 C -0.07 -0.83 7.27 -84.74 -0.62 -1.45 16 15 C 0.08 0.86 9.76 -38.51 -0.38 0.48 16 16 N -0.20 -2.34 12.40 32.17 0.40 -1.94 16 17 N 0.01 0.11 13.71 60.35 0.83 0.94 16 18 N -0.39 -3.50 4.10 -67.18 -0.28 -3.78 16 19 C 0.10 0.44 11.54 59.85 0.69 1.13 16 20 C -0.14 -2.26 6.77 -24.58 -0.17 -2.43 16 21 C 0.11 2.32 4.75 -2.53 -0.01 2.31 16 22 N -0.60 -12.94 2.85 -162.57 -0.46 -13.41 16 23 C -0.24 -6.03 7.98 -15.06 -0.12 -6.15 16 24 H 0.09 2.54 7.25 -52.49 -0.38 2.16 16 25 C 0.03 0.72 5.45 -17.43 -0.09 0.62 16 26 N -0.91 -26.61 13.97 55.49 0.78 -25.83 16 27 Si 0.88 21.78 24.35 -169.99 -4.14 17.64 16 28 H -0.29 -6.87 6.73 56.52 0.38 -6.49 16 29 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 30 H -0.27 -6.71 6.78 56.52 0.38 -6.33 16 31 H 0.09 1.97 5.49 -51.93 -0.29 1.68 16 32 H 0.04 0.69 8.12 -51.93 -0.42 0.27 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.40 3.37 6.35 -40.82 -0.26 3.11 16 37 H 0.18 0.89 6.39 -52.48 -0.34 0.56 16 38 H 0.17 1.60 7.71 -52.49 -0.40 1.20 16 39 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.03 0.56 5.44 -51.93 -0.28 0.28 16 45 H 0.06 1.33 7.29 -51.93 -0.38 0.95 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 372.38 15.07 5.61 5.61 Total: -1.00 -32.93 372.38 -6.70 -39.63 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.09 Total: 0.70 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -3.03 Total: 1.68 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.86 Total: -57.07 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.14 Total: 17.64 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.93 -6.70 -39.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087659867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.199 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds