Wall clock time and date at job start Wed Apr 1 2020 02:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47317 * 2 1 4 4 H 1.09005 * 109.99446 * 56.20501 * 3 2 1 5 5 C 1.54322 * 109.88525 * 295.11126 * 3 2 1 6 6 H 1.08994 * 110.87109 * 336.82061 * 5 3 2 7 7 N 1.46499 * 110.72222 * 100.02116 * 5 3 2 8 8 C 1.34782 * 120.00203 * 199.97550 * 7 5 3 9 9 O 1.21538 * 119.99644 * 0.02562 * 8 7 5 10 10 C 1.47875 * 120.00081 * 179.97438 * 8 7 5 11 11 C 1.39451 * 121.11394 * 359.83119 * 10 8 7 12 12 C 1.38617 * 119.37433 * 179.70533 * 11 10 8 13 13 N 1.31596 * 121.63468 * 0.23684 * 12 11 10 14 14 C 1.32205 * 121.86525 * 0.02562 * 13 12 11 15 15 C 1.40863 * 121.11351 * 180.02562 * 10 8 7 16 16 N 1.34391 * 135.14771 * 359.97228 * 15 10 8 17 17 N 1.28688 * 109.15382 * 180.29365 * 16 15 10 18 18 N 1.28777 * 111.75854 * 0.02562 * 17 16 15 19 19 C 1.46499 * 125.87221 * 179.97438 * 18 17 16 20 20 C 1.55159 * 102.94313 * 218.38593 * 5 3 2 21 21 C 1.54914 * 101.57832 * 35.50071 * 20 5 3 22 22 N 1.47023 * 109.88567 * 177.29506 * 3 2 1 23 23 C 1.36933 * 125.64990 * 298.32941 * 22 3 2 24 24 H 1.08000 * 119.99993 * 348.10909 * 23 22 3 25 25 C 1.38817 * 119.99655 * 168.11142 * 23 22 3 26 26 N 1.31611 * 120.00184 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 119.99425 * 179.97438 * 25 23 22 28 28 H 1.48496 * 109.47108 * 60.00543 * 27 25 23 29 29 H 1.48506 * 109.46672 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47211 * 299.99906 * 27 25 23 31 31 H 1.09001 * 109.46991 * 185.49143 * 1 2 3 32 32 H 1.09001 * 109.46893 * 305.48900 * 1 2 3 33 33 H 1.08989 * 109.47511 * 65.48996 * 1 2 3 34 34 H 1.08999 * 109.46765 * 240.00391 * 2 1 3 35 35 H 1.09000 * 109.47298 * 120.00509 * 2 1 3 36 36 H 0.97000 * 120.00263 * 19.97967 * 7 5 3 37 37 H 1.08003 * 120.31595 * 359.92296 * 11 10 8 38 38 H 1.07996 * 119.18676 * 180.21595 * 12 11 10 39 39 H 1.09006 * 109.47137 * 90.02275 * 19 18 17 40 40 H 1.08996 * 109.47554 * 210.02200 * 19 18 17 41 41 H 1.08995 * 109.46946 * 330.02542 * 19 18 17 42 42 H 1.08993 * 111.00327 * 153.57247 * 20 5 3 43 43 H 1.08998 * 111.00122 * 277.42883 * 20 5 3 44 44 H 1.09000 * 110.36887 * 81.82927 * 21 20 5 45 45 H 1.09000 * 110.36013 * 204.15133 * 21 20 5 46 46 H 0.97005 * 120.00119 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6271 1.9838 0.8513 5 6 1.6344 2.1427 -1.3140 6 1 1.4536 1.4129 -2.1031 7 7 0.4534 2.9851 -1.1094 8 6 -0.2994 3.3578 -2.1634 9 8 0.0013 2.9947 -3.2836 10 6 -1.4917 4.2077 -1.9567 11 6 -1.8606 4.6338 -0.6812 12 6 -2.9817 5.4348 -0.5296 13 7 -3.7127 5.8013 -1.5607 14 6 -3.4181 5.4260 -2.7937 15 6 -2.2953 4.6105 -3.0412 16 7 -2.2722 4.4107 -4.3700 17 7 -3.2657 5.0277 -4.9071 18 7 -3.9764 5.6443 -4.0279 19 6 -5.1751 6.4417 -4.2988 20 6 2.8775 3.0107 -1.6434 21 6 4.0311 2.1010 -1.1519 22 7 3.5088 1.4536 0.0652 23 6 4.2661 0.9471 1.0875 24 1 3.7974 0.6670 2.0193 25 6 5.6363 0.7936 0.9260 26 7 6.2075 1.1353 -0.2093 27 14 6.6694 0.1032 2.3209 28 1 6.1932 -1.2615 2.6611 29 1 8.0918 0.0397 1.8987 30 1 6.5447 0.9823 3.5113 31 1 -0.3633 -1.0230 0.0983 32 1 -0.3633 0.5966 0.8368 33 1 -0.3634 0.4263 -0.9349 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.2133 3.2747 -0.2153 37 1 -1.2762 4.3455 0.1801 38 1 -3.2626 5.7659 0.4592 39 1 -6.0561 5.8016 -4.2496 40 1 -5.2600 7.2343 -3.5554 41 1 -5.1013 6.8824 -5.2930 42 1 2.9536 3.1934 -2.7152 43 1 2.8567 3.9490 -1.0891 44 1 4.2715 1.3521 -1.9066 45 1 4.9113 2.6989 -0.9156 46 1 7.1650 1.0284 -0.3220 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087703961.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:53 Heat of formation + Delta-G solvation = 130.325599 kcal Electronic energy + Delta-G solvation = -30132.377401 eV Core-core repulsion = 26060.671760 eV Total energy + Delta-G solvation = -4071.705641 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.63968 -40.16626 -39.00572 -37.66442 -35.31090 -34.19829 -32.99497 -32.52407 -31.55487 -31.10116 -29.00730 -28.31617 -26.80590 -25.72252 -24.46653 -23.94783 -22.88909 -21.88328 -20.59019 -20.22738 -19.67863 -19.03419 -17.93687 -17.59981 -17.28993 -16.83990 -15.93663 -15.54670 -15.05320 -14.88437 -14.74285 -14.30356 -14.04798 -13.94651 -13.75197 -13.62872 -13.33979 -13.21147 -13.05929 -12.71500 -12.51357 -12.06890 -11.95388 -11.78750 -11.66976 -11.36224 -11.16590 -10.90395 -10.84354 -10.62188 -10.49284 -10.39919 -10.17596 -10.11042 -9.77885 -9.65147 -9.59264 -9.56017 -9.26629 -8.69633 -8.58845 -6.84417 -5.74729 -3.11651 -0.22533 0.54862 1.57523 1.95061 2.71243 2.99277 3.33077 3.38665 3.43359 3.44641 3.45729 3.90155 4.02535 4.24644 4.25851 4.47516 4.56515 4.58997 4.85534 4.92458 5.14262 5.23787 5.27126 5.34271 5.46548 5.49531 5.53758 5.72432 5.78383 5.79804 5.84195 6.01494 6.04052 6.21055 6.24603 6.38959 6.45043 6.54296 6.68525 6.70463 6.91849 7.11131 7.13342 7.52096 7.56260 7.62006 7.79228 7.95550 8.24039 8.28305 9.17100 9.78205 10.44900 11.36032 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.024463 B = 0.002407 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.311229 B =11629.681509 C =11909.541952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.036 0.964 5 C 0.139 3.861 6 H 0.095 0.905 7 N -0.704 5.704 8 C 0.548 3.452 9 O -0.500 6.500 10 C -0.003 4.003 11 C -0.144 4.144 12 C 0.159 3.841 13 N -0.460 5.460 14 C 0.209 3.791 15 C 0.003 3.997 16 N -0.212 5.212 17 N -0.007 5.007 18 N -0.312 5.312 19 C 0.091 3.909 20 C -0.156 4.156 21 C 0.172 3.828 22 N -0.594 5.594 23 C -0.228 4.228 24 H 0.076 0.924 25 C -0.004 4.004 26 N -0.917 5.917 27 Si 0.911 3.089 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.396 0.604 37 H 0.159 0.841 38 H 0.182 0.818 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.026 0.974 45 H 0.080 0.920 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.076 11.087 -0.959 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.172 4.172 3 C 0.054 3.946 4 H 0.053 0.947 5 C 0.035 3.965 6 H 0.113 0.887 7 N -0.356 5.356 8 C 0.332 3.668 9 O -0.374 6.374 10 C -0.020 4.020 11 C -0.168 4.168 12 C -0.013 4.013 13 N -0.173 5.173 14 C -0.034 4.034 15 C -0.127 4.127 16 N -0.086 5.086 17 N 0.011 4.989 18 N -0.113 5.113 19 C -0.049 4.049 20 C -0.196 4.196 21 C 0.047 3.953 22 N -0.319 5.319 23 C -0.356 4.356 24 H 0.093 0.907 25 C -0.201 4.201 26 N -0.564 5.564 27 Si 0.741 3.259 28 H -0.211 1.211 29 H -0.216 1.216 30 H -0.211 1.211 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.232 0.768 37 H 0.176 0.824 38 H 0.199 0.801 39 H 0.109 0.891 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.098 0.902 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -23.230 11.009 -3.277 25.914 hybrid contribution 0.816 -0.434 2.070 2.267 sum -22.413 10.575 -1.207 24.812 Atomic orbital electron populations 1.21778 0.97271 1.00595 1.00888 1.22026 0.93560 0.99137 1.02501 1.21050 0.87151 0.93342 0.93046 0.94681 1.22181 0.83087 0.92306 0.98942 0.88692 1.45979 1.28233 1.52257 1.09145 1.17835 0.82434 0.81007 0.85537 1.90878 1.70081 1.53606 1.22830 1.19800 0.94732 0.96539 0.90923 1.22435 0.98818 0.98756 0.96751 1.22820 0.89614 0.92316 0.96579 1.66270 1.31623 1.23209 0.96235 1.19794 0.94422 1.00516 0.88624 1.20130 0.97321 1.01946 0.93270 1.75587 1.11633 1.16242 1.05116 1.78285 0.99673 1.04187 1.16739 1.47036 1.23463 1.38425 1.02426 1.22278 0.82395 0.95144 1.05087 1.23442 0.96551 0.99039 1.00588 1.21503 0.93375 0.92986 0.87449 1.44448 0.98249 1.68393 1.20764 1.18895 0.89092 1.35756 0.91875 0.90664 1.24874 0.97023 1.01100 0.97116 1.69909 1.10183 1.52480 1.23789 0.86226 0.79473 0.79012 0.81171 1.21121 1.21620 1.21148 0.93641 0.93435 0.93315 0.92274 0.91674 0.76841 0.82352 0.80108 0.89101 0.87961 0.87764 0.91709 0.91984 0.95595 0.90167 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.57 37.16 0.36 -1.72 16 2 C -0.13 -2.37 5.41 -26.73 -0.14 -2.51 16 3 C 0.16 3.07 2.94 -66.95 -0.20 2.87 16 4 H 0.04 0.63 7.69 -51.93 -0.40 0.23 16 5 C 0.14 2.42 1.92 -66.10 -0.13 2.30 16 6 H 0.10 1.82 7.34 -51.93 -0.38 1.44 16 7 N -0.70 -9.72 4.89 -52.97 -0.26 -9.98 16 8 C 0.55 8.42 7.79 -12.31 -0.10 8.32 16 9 O -0.50 -9.85 16.00 5.33 0.09 -9.77 16 10 C 0.00 -0.04 5.92 -104.51 -0.62 -0.66 16 11 C -0.14 -1.15 9.61 -38.99 -0.37 -1.52 16 12 C 0.16 1.11 11.14 -17.51 -0.20 0.91 16 13 N -0.46 -4.44 10.35 -12.38 -0.13 -4.57 16 14 C 0.21 2.47 8.08 -156.21 -1.26 1.21 16 15 C 0.00 0.04 6.97 -84.72 -0.59 -0.55 16 16 N -0.21 -3.47 11.92 32.23 0.38 -3.08 16 17 N -0.01 -0.10 13.07 60.35 0.79 0.69 16 18 N -0.31 -3.32 3.79 -67.23 -0.26 -3.57 16 19 C 0.09 0.45 11.41 59.85 0.68 1.13 16 20 C -0.16 -3.02 6.77 -24.58 -0.17 -3.19 16 21 C 0.17 4.09 5.46 -2.53 -0.01 4.08 16 22 N -0.59 -14.25 3.13 -162.57 -0.51 -14.76 16 23 C -0.23 -6.02 9.77 -15.06 -0.15 -6.16 16 24 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 25 C 0.00 -0.11 5.47 -17.43 -0.10 -0.21 16 26 N -0.92 -26.30 10.47 55.49 0.58 -25.72 16 27 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.70 7.38 -51.94 -0.38 0.32 16 34 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 35 H 0.06 1.24 7.91 -51.93 -0.41 0.83 16 36 H 0.40 4.18 6.46 -40.82 -0.26 3.92 16 37 H 0.16 0.75 6.53 -52.48 -0.34 0.41 16 38 H 0.18 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.03 0.68 8.11 -51.93 -0.42 0.25 16 45 H 0.08 2.12 6.73 -51.93 -0.35 1.78 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -35.52 380.15 -7.90 -43.42 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.30 Total: 0.85 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: -2.99 Total: 4.29 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.60 Total: -60.99 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.52 -7.90 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087703961.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.743 kcal (2) G-P(sol) polarization free energy of solvation -35.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds