Wall clock time and date at job start Wed Apr 1 2020 02:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47474 * 2 1 4 4 H 1.09004 * 109.99570 * 302.38980 * 3 2 1 5 5 C 1.54318 * 109.88607 * 181.29062 * 3 2 1 6 6 H 1.09000 * 110.71853 * 336.93020 * 5 3 2 7 7 N 1.46499 * 110.72187 * 100.02503 * 5 3 2 8 8 C 1.34778 * 120.00063 * 202.55928 * 7 5 3 9 9 O 1.21278 * 120.00071 * 0.02562 * 8 7 5 10 10 C 1.50703 * 119.99747 * 180.27354 * 8 7 5 11 11 C 1.50706 * 109.46943 * 179.72425 * 10 8 7 12 12 N 1.32608 * 125.18093 * 90.02867 * 11 10 8 13 13 C 1.32827 * 109.75301 * 179.97438 * 12 11 10 14 14 N 1.33821 * 132.50342 * 180.02562 * 13 12 11 15 15 C 1.31348 * 120.86487 * 179.97438 * 14 13 12 16 16 C 1.40036 * 120.31229 * 0.02562 * 15 14 13 17 17 C 1.35778 * 119.24191 * 0.02562 * 16 15 14 18 18 N 1.35971 * 119.02040 * 359.97438 * 17 16 15 19 19 N 1.31185 * 125.18322 * 269.72073 * 11 10 8 20 20 C 1.55160 * 103.10392 * 218.47868 * 5 3 2 21 21 C 1.54914 * 101.57900 * 35.41160 * 20 5 3 22 22 N 1.47315 * 110.06251 * 63.55357 * 3 2 1 23 23 C 1.36938 * 125.61817 * 298.25487 * 22 3 2 24 24 H 1.08000 * 119.99875 * 326.21032 * 23 22 3 25 25 C 1.38814 * 120.00021 * 146.21572 * 23 22 3 26 26 N 1.31620 * 120.00132 * 162.09529 * 25 23 22 27 27 Si 1.86807 * 119.99785 * 342.08890 * 25 23 22 28 28 H 1.48503 * 109.46785 * 88.97577 * 27 25 23 29 29 H 1.48506 * 109.46963 * 208.97118 * 27 25 23 30 30 H 1.48501 * 109.47331 * 328.97402 * 27 25 23 31 31 H 1.08998 * 109.47797 * 292.17954 * 1 2 3 32 32 H 1.09002 * 109.46890 * 52.18202 * 1 2 3 33 33 H 1.09002 * 109.47133 * 172.17827 * 1 2 3 34 34 H 1.09009 * 109.47336 * 239.99965 * 2 1 3 35 35 H 1.09001 * 109.47448 * 120.00328 * 2 1 3 36 36 H 0.97000 * 119.99838 * 22.55856 * 7 5 3 37 37 H 1.08999 * 109.47713 * 299.72711 * 10 8 7 38 38 H 1.09001 * 109.46796 * 59.73078 * 10 8 7 39 39 H 1.08008 * 119.84119 * 179.97438 * 15 14 13 40 40 H 1.08011 * 120.37979 * 179.97438 * 16 15 14 41 41 H 1.07998 * 120.48854 * 179.97438 * 17 16 15 42 42 H 1.09000 * 111.00448 * 153.48665 * 20 5 3 43 43 H 1.09001 * 111.00341 * 277.30183 * 20 5 3 44 44 H 1.09000 * 110.36082 * 81.83037 * 21 20 5 45 45 H 1.09000 * 110.36145 * 204.04229 * 21 20 5 46 46 H 0.96996 * 119.99675 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6469 1.9768 -0.8650 5 6 3.5828 1.4537 -0.0327 6 1 3.9834 0.5155 0.3514 7 7 4.0707 1.7061 -1.3908 8 6 5.3129 1.3199 -1.7432 9 8 6.0267 0.7631 -0.9362 10 6 5.8170 1.5852 -3.1385 11 6 7.2253 1.0652 -3.2711 12 7 7.5543 -0.1589 -3.6605 13 6 8.8763 -0.2873 -3.6687 14 7 9.6837 -1.3081 -3.9803 15 6 10.9890 -1.1816 -3.9065 16 6 11.5596 0.0301 -3.4976 17 6 10.7484 1.0710 -3.1784 18 7 9.4013 0.9082 -3.2652 19 7 8.3126 1.7565 -3.0243 20 6 3.9460 2.6321 0.9090 21 6 2.8351 2.5254 1.9834 22 7 1.6275 2.1244 1.2389 23 6 0.3355 2.3464 1.6348 24 1 -0.4300 2.5375 0.8973 25 6 0.0097 2.3259 2.9840 26 7 -1.1139 2.8721 3.3981 27 14 1.1661 1.5229 4.2119 28 1 2.1478 2.5262 4.6965 29 1 0.3832 1.0012 5.3611 30 1 1.8863 0.4030 3.5545 31 1 -0.3634 0.3879 0.9516 32 1 -0.3633 0.6301 -0.8118 33 1 -0.3633 -1.0181 -0.1399 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 3.4996 2.1511 -2.0364 37 1 5.1739 1.0803 -3.8593 38 1 5.8062 2.6580 -3.3308 39 1 11.6251 -2.0164 -4.1615 40 1 12.6329 0.1352 -3.4361 41 1 11.1669 2.0144 -2.8603 42 1 4.9321 2.4894 1.3510 43 1 3.8906 3.5847 0.3820 44 1 3.0942 1.7676 2.7228 45 1 2.6817 3.4900 2.4673 46 1 -1.3417 2.8574 4.3409 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087827613.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:07 Heat of formation + Delta-G solvation = 131.329260 kcal Electronic energy + Delta-G solvation = -29595.059088 eV Core-core repulsion = 25523.396969 eV Total energy + Delta-G solvation = -4071.662119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.25570 -40.00942 -39.12594 -37.92542 -34.96780 -34.20893 -32.83500 -32.43944 -32.08557 -31.07089 -30.12068 -28.95115 -26.99964 -25.16903 -24.45488 -24.01920 -22.20164 -21.98347 -20.78292 -20.34427 -19.34891 -18.80336 -18.47952 -17.38750 -17.04756 -16.71074 -16.58781 -16.02451 -15.28119 -15.10705 -14.91501 -14.73198 -13.87636 -13.80289 -13.72565 -13.52317 -13.20285 -13.06060 -13.01077 -12.88500 -12.42826 -12.39773 -12.33695 -12.11099 -11.82398 -11.36799 -11.04533 -10.82491 -10.64113 -10.49596 -10.43892 -10.41418 -10.23692 -10.18113 -10.08491 -9.87456 -9.72929 -9.44713 -9.18523 -8.82774 -8.54084 -6.89127 -5.99748 -3.39814 -0.01760 0.30577 1.49253 2.10119 2.62372 2.81184 3.01270 3.28088 3.35956 3.48180 3.53451 3.54692 3.81329 4.07687 4.34430 4.53123 4.54970 4.69223 4.82213 5.00339 5.00588 5.04375 5.19349 5.22903 5.32827 5.36433 5.62128 5.72748 5.82404 5.84263 5.86756 5.93334 5.98962 6.14618 6.21282 6.34722 6.44207 6.59149 6.64842 6.68153 6.77771 6.80188 7.01198 7.07403 7.43468 7.55462 7.58313 7.85792 8.23973 8.31611 8.81897 9.64318 10.19744 11.15655 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.024025 B = 0.002205 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.186718 B =12695.044507 C =13025.409425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.155 3.845 4 H 0.047 0.953 5 C 0.134 3.866 6 H 0.095 0.905 7 N -0.712 5.712 8 C 0.523 3.477 9 O -0.533 6.533 10 C -0.054 4.054 11 C 0.302 3.698 12 N -0.510 5.510 13 C 0.442 3.558 14 N -0.453 5.453 15 C 0.204 3.796 16 C -0.227 4.227 17 C 0.174 3.826 18 N -0.326 5.326 19 N -0.321 5.321 20 C -0.140 4.140 21 C 0.117 3.883 22 N -0.598 5.598 23 C -0.234 4.234 24 H 0.088 0.912 25 C 0.031 3.969 26 N -0.905 5.905 27 Si 0.880 3.120 28 H -0.286 1.286 29 H -0.302 1.302 30 H -0.270 1.270 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.029 0.971 34 H 0.043 0.957 35 H 0.054 0.946 36 H 0.402 0.598 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.191 0.809 40 H 0.175 0.825 41 H 0.183 0.817 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.024 0.976 45 H 0.059 0.941 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.084 -2.931 -17.393 30.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.049 3.951 4 H 0.065 0.935 5 C 0.030 3.970 6 H 0.113 0.887 7 N -0.363 5.363 8 C 0.306 3.694 9 O -0.409 6.409 10 C -0.097 4.097 11 C 0.021 3.979 12 N -0.242 5.242 13 C 0.081 3.919 14 N -0.167 5.167 15 C 0.018 3.982 16 C -0.252 4.252 17 C 0.036 3.964 18 N -0.105 5.105 19 N -0.152 5.152 20 C -0.180 4.180 21 C -0.008 4.008 22 N -0.325 5.325 23 C -0.361 4.361 24 H 0.106 0.894 25 C -0.169 4.169 26 N -0.547 5.547 27 Si 0.710 3.290 28 H -0.213 1.213 29 H -0.229 1.229 30 H -0.195 1.195 31 H 0.113 0.887 32 H 0.061 0.939 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.237 0.763 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.207 0.793 40 H 0.192 0.808 41 H 0.200 0.800 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.041 0.959 45 H 0.077 0.923 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 24.350 -3.471 -16.730 29.747 hybrid contribution 1.060 0.324 0.832 1.385 sum 25.410 -3.147 -15.899 30.138 Atomic orbital electron populations 1.21905 0.95134 0.99005 1.04745 1.21881 0.97447 0.97133 0.99912 1.21307 0.89378 0.92470 0.91981 0.93510 1.22137 0.95125 0.99184 0.80597 0.88724 1.45922 1.14970 1.60779 1.14612 1.19959 0.82081 0.78818 0.88510 1.90748 1.55959 1.41629 1.52542 1.20074 0.87742 1.04145 0.97733 1.23508 0.95400 0.87249 0.91771 1.70687 1.06599 1.18946 1.27938 1.22725 0.90883 0.83118 0.95137 1.68012 1.04793 1.25678 1.18253 1.23594 0.89609 0.97129 0.87875 1.21958 1.02578 0.93498 1.07164 1.22180 0.79092 1.01822 0.93275 1.48771 1.06851 1.12690 1.42183 1.78548 0.91701 1.14088 1.30852 1.23123 0.98839 0.98185 0.97822 1.21910 0.86593 0.98546 0.93778 1.44774 1.01736 1.64403 1.21551 1.18449 0.83183 1.42461 0.92045 0.89432 1.25379 0.95664 0.98562 0.97269 1.69792 1.24507 1.44921 1.15510 0.86884 0.80254 0.80926 0.80955 1.21267 1.22943 1.19547 0.88679 0.93943 0.95199 0.93842 0.92706 0.76321 0.85206 0.85674 0.79255 0.80786 0.80013 0.91514 0.90935 0.95880 0.92274 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.03 37.15 0.34 -2.59 16 2 C -0.12 -2.32 5.49 -26.74 -0.15 -2.47 16 3 C 0.16 2.92 3.03 -66.80 -0.20 2.72 16 4 H 0.05 0.84 7.70 -51.93 -0.40 0.44 16 5 C 0.13 2.28 2.79 -66.10 -0.18 2.09 16 6 H 0.09 1.79 7.33 -51.93 -0.38 1.41 16 7 N -0.71 -9.43 5.19 -52.03 -0.27 -9.70 16 8 C 0.52 7.48 7.82 -10.98 -0.09 7.39 16 9 O -0.53 -10.15 15.72 5.56 0.09 -10.06 16 10 C -0.05 -0.58 6.33 -29.03 -0.18 -0.76 16 11 C 0.30 4.27 6.59 -157.01 -1.03 3.23 16 12 N -0.51 -8.01 11.25 -11.80 -0.13 -8.14 16 13 C 0.44 6.07 8.99 -323.14 -2.91 3.16 16 14 N -0.45 -4.99 10.48 -13.82 -0.14 -5.14 16 15 C 0.20 1.06 11.26 -17.08 -0.19 0.87 16 16 C -0.23 -0.74 10.06 -39.79 -0.40 -1.14 16 17 C 0.17 1.09 11.32 -16.60 -0.19 0.90 16 18 N -0.33 -3.85 3.91 -13.84 -0.05 -3.90 16 19 N -0.32 -4.44 12.78 32.39 0.41 -4.03 16 20 C -0.14 -2.47 6.77 -24.58 -0.17 -2.64 16 21 C 0.12 2.51 4.98 -2.52 -0.01 2.50 16 22 N -0.60 -13.68 2.73 -162.35 -0.44 -14.12 16 23 C -0.23 -6.20 7.36 -15.06 -0.11 -6.31 16 24 H 0.09 2.48 7.81 -52.49 -0.41 2.07 16 25 C 0.03 0.88 5.45 -17.43 -0.10 0.79 16 26 N -0.91 -27.04 13.97 55.49 0.78 -26.27 16 27 Si 0.88 22.46 24.71 -169.99 -4.20 18.26 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 29 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 30 H -0.27 -6.85 6.77 56.52 0.38 -6.47 16 31 H 0.09 2.20 5.60 -51.93 -0.29 1.91 16 32 H 0.04 0.78 8.13 -51.93 -0.42 0.36 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 4.05 8.34 -40.82 -0.34 3.71 16 37 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 38 H 0.13 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.19 0.11 8.06 -52.48 -0.42 -0.31 16 40 H 0.17 -0.21 8.06 -52.48 -0.42 -0.64 16 41 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.02 0.53 5.29 -51.93 -0.27 0.26 16 45 H 0.06 1.32 7.99 -51.93 -0.41 0.91 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -39.03 376.67 -10.18 -49.21 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.32 Total: 0.47 kcal Atomic # 6 Polarization: 13.32 SS G_CDS: -5.57 Total: 7.75 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: 0.14 Total: -71.30 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.20 Total: 18.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -39.03 -10.18 -49.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087827613.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.539 kcal (2) G-P(sol) polarization free energy of solvation -39.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds