Wall clock time and date at job start Wed Apr 1 2020 03:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 110.88992 * 2 1 4 4 C 1.54912 * 111.00086 * 236.11516 * 2 1 3 5 5 N 1.47426 * 104.82994 * 204.87731 * 4 2 1 6 6 C 1.36935 * 125.64890 * 204.09486 * 5 4 2 7 7 H 1.08000 * 120.00518 * 179.75587 * 6 5 4 8 8 C 1.38817 * 119.99990 * 0.02562 * 6 5 4 9 9 N 1.31617 * 119.99869 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99909 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47361 * 0.02562 * 10 8 6 12 12 H 1.48508 * 109.46860 * 120.00310 * 10 8 6 13 13 H 1.48500 * 109.47264 * 240.00123 * 10 8 6 14 14 C 1.47022 * 108.70625 * 24.35934 * 5 4 2 15 15 C 1.54335 * 107.26195 * 358.58545 * 14 5 4 16 16 H 1.09000 * 110.51842 * 96.45537 * 15 14 5 17 17 C 1.53004 * 111.00070 * 219.59791 * 15 14 5 18 18 C 1.52996 * 109.47125 * 288.78390 * 17 15 14 19 19 N 1.46508 * 109.46707 * 179.97438 * 18 17 15 20 20 C 1.34776 * 119.99579 * 179.97438 * 19 18 17 21 21 O 1.21517 * 120.00282 * 359.97438 * 20 19 18 22 22 C 1.48130 * 119.99691 * 179.97438 * 20 19 18 23 23 N 1.33465 * 125.32437 * 359.68958 * 22 20 19 24 24 C 1.32500 * 109.75258 * 179.88114 * 23 22 20 25 25 N 1.33993 * 132.34345 * 180.08721 * 24 23 22 26 26 C 1.31257 * 120.87905 * 180.32431 * 25 24 23 27 27 C 1.40167 * 120.36062 * 359.97438 * 26 25 24 28 28 C 1.35688 * 119.27287 * 0.02562 * 27 26 25 29 29 N 1.36175 * 119.02464 * 359.97438 * 28 27 26 30 30 N 1.31990 * 125.32197 * 180.02562 * 22 20 19 31 31 H 1.08996 * 109.47303 * 182.42955 * 1 2 3 32 32 H 1.09006 * 109.46537 * 302.42803 * 1 2 3 33 33 H 1.08996 * 109.47165 * 62.42956 * 1 2 3 34 34 H 1.08998 * 110.36455 * 86.04455 * 4 2 1 35 35 H 1.08995 * 110.37228 * 323.71591 * 4 2 1 36 36 H 0.96996 * 119.99743 * 179.97438 * 9 8 6 37 37 H 1.09007 * 109.88188 * 118.12720 * 14 5 4 38 38 H 1.09002 * 109.88437 * 239.29313 * 14 5 4 39 39 H 1.09009 * 109.46621 * 48.78194 * 17 15 14 40 40 H 1.09003 * 109.47118 * 168.77881 * 17 15 14 41 41 H 1.09000 * 109.47127 * 299.99186 * 18 17 15 42 42 H 1.08993 * 109.47568 * 60.00281 * 18 17 15 43 43 H 0.96996 * 120.00130 * 359.97438 * 19 18 17 44 44 H 1.08000 * 119.81676 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.36690 * 180.02562 * 27 26 25 46 46 H 1.07996 * 120.48822 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0852 -0.8063 -1.2006 5 7 3.4274 -1.2421 -0.7741 6 6 4.4642 -1.5651 -1.6083 7 1 5.4143 -1.8707 -1.1957 8 6 4.2957 -1.4944 -2.9844 9 7 3.1396 -1.1164 -3.4873 10 14 5.7102 -1.9344 -4.1224 11 1 6.8932 -2.3243 -3.3139 12 1 5.3104 -3.0691 -4.9931 13 1 6.0512 -0.7601 -4.9651 14 6 3.4667 -1.2785 0.6951 15 6 2.0870 -0.8078 1.2019 16 1 1.4481 -1.6634 1.4209 17 6 2.2317 0.0866 2.4349 18 6 2.6628 -0.7620 3.6327 19 7 2.8019 0.0947 4.8131 20 6 3.1751 -0.4393 5.9930 21 8 3.3957 -1.6313 6.0778 22 6 3.3163 0.4269 7.1863 23 7 3.1073 1.7448 7.2123 24 6 3.3187 2.2077 8.4357 25 7 3.2398 3.4376 8.9615 26 6 3.5100 3.6470 10.2288 27 6 3.8871 2.5819 11.0582 28 6 3.9704 1.3321 10.5366 29 7 3.6841 1.1459 9.2183 30 7 3.6745 0.0170 8.3887 31 1 -0.3634 -1.0267 0.0436 32 1 -0.3632 0.5511 0.8675 33 1 -0.3633 0.4756 -0.9109 34 1 2.1553 -0.1715 -2.0839 35 1 1.4522 -1.6703 -1.4026 36 1 3.0220 -1.0667 -4.4488 37 1 3.6616 -2.2956 1.0356 38 1 4.2431 -0.6073 1.0620 39 1 2.9836 0.8519 2.2422 40 1 1.2757 0.5631 2.6523 41 1 1.9108 -1.5272 3.8253 42 1 3.6187 -1.2383 3.4154 43 1 2.6254 1.0460 4.7454 44 1 3.4412 4.6455 10.6346 45 1 4.1091 2.7540 12.1011 46 1 4.2595 0.4972 11.1577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103554331.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:29 Heat of formation + Delta-G solvation = 128.206568 kcal Electronic energy + Delta-G solvation = -28563.658367 eV Core-core repulsion = 24491.860838 eV Total energy + Delta-G solvation = -4071.797529 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.48101 -40.11328 -38.97776 -38.07991 -35.41964 -35.15184 -33.26017 -32.12892 -31.34047 -31.01728 -30.62162 -27.40504 -26.08056 -25.54342 -24.89642 -24.06251 -23.37568 -21.95133 -20.83017 -19.69619 -19.28396 -19.01445 -18.74360 -17.70538 -17.26866 -16.80213 -16.55804 -15.91306 -15.71071 -15.17106 -15.02947 -14.41369 -14.19243 -13.94199 -13.83415 -13.58014 -13.31946 -13.25208 -12.94314 -12.77921 -12.63436 -12.05308 -11.99191 -11.62939 -11.46086 -11.08472 -10.99350 -10.90160 -10.82500 -10.71734 -10.68703 -10.55625 -10.36884 -10.04093 -9.84107 -9.77635 -9.66664 -9.48253 -9.28381 -9.22156 -8.59326 -6.75383 -5.59219 -3.00315 -0.28720 -0.00442 1.13786 1.33301 2.41641 2.61804 2.79030 3.03857 3.43561 3.49167 3.51645 3.52676 3.62079 3.98188 4.18973 4.46481 4.54333 4.61885 4.92985 5.07223 5.13547 5.32380 5.34770 5.40749 5.49925 5.52695 5.57971 5.60431 5.70487 5.79373 5.94788 6.01605 6.14591 6.25312 6.31850 6.33462 6.39891 6.62006 6.67937 6.73414 6.75358 6.89038 7.03464 7.08355 7.34616 7.62086 7.70668 7.84823 7.93415 8.43412 9.29069 9.90058 10.55610 11.44546 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020384 B = 0.001780 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.270587 B =15724.533392 C =16149.717120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.115 4.115 3 H 0.069 0.931 4 C 0.158 3.842 5 N -0.606 5.606 6 C -0.219 4.219 7 H 0.077 0.923 8 C -0.014 4.014 9 N -0.922 5.922 10 Si 0.913 3.087 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.138 3.862 15 C -0.092 4.092 16 H 0.073 0.927 17 C -0.117 4.117 18 C 0.117 3.883 19 N -0.698 5.698 20 C 0.607 3.393 21 O -0.505 6.505 22 C 0.244 3.756 23 N -0.498 5.498 24 C 0.442 3.558 25 N -0.448 5.448 26 C 0.210 3.790 27 C -0.219 4.219 28 C 0.173 3.827 29 N -0.329 5.329 30 N -0.267 5.267 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.105 0.895 35 H 0.011 0.989 36 H 0.250 0.750 37 H 0.020 0.980 38 H 0.023 0.977 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.413 0.587 44 H 0.194 0.806 45 H 0.179 0.821 46 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 11.031 32.160 34.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.087 0.913 4 C 0.034 3.966 5 N -0.331 5.331 6 C -0.347 4.347 7 H 0.095 0.905 8 C -0.209 4.209 9 N -0.572 5.572 10 Si 0.744 3.256 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.012 3.988 15 C -0.112 4.112 16 H 0.092 0.908 17 C -0.155 4.155 18 C -0.005 4.005 19 N -0.350 5.350 20 C 0.386 3.614 21 O -0.376 6.376 22 C -0.040 4.040 23 N -0.232 5.232 24 C 0.082 3.918 25 N -0.163 5.163 26 C 0.023 3.977 27 C -0.244 4.244 28 C 0.037 3.963 29 N -0.110 5.110 30 N -0.101 5.101 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.029 0.971 36 H 0.061 0.939 37 H 0.038 0.962 38 H 0.041 0.959 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.249 0.751 44 H 0.211 0.789 45 H 0.196 0.804 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.666 10.010 30.917 32.607 hybrid contribution 0.928 -0.245 0.316 1.010 sum -1.739 9.765 31.233 32.770 Atomic orbital electron populations 1.21635 0.95759 1.01120 1.00591 1.22631 0.94375 0.99410 0.97022 0.91306 1.21966 0.84060 0.95857 0.94752 1.44511 1.10525 1.78904 0.99189 1.19142 0.90989 1.37354 0.87236 0.90505 1.24783 0.97271 1.02217 0.96622 1.69816 1.22357 1.54126 1.10856 0.86012 0.81206 0.77562 0.80832 1.20564 1.21819 1.21816 1.21391 0.93741 0.97245 0.86382 1.22151 0.98199 0.97610 0.93219 0.90839 1.21810 1.01869 0.98542 0.93319 1.21695 1.02839 0.93252 0.82706 1.45830 1.67468 1.13459 1.08251 1.16297 0.78820 0.85494 0.80796 1.90881 1.49090 1.13771 1.83903 1.24300 0.96138 0.89426 0.94099 1.70838 1.28030 1.08365 1.16004 1.22701 0.95556 0.85564 0.88001 1.68121 1.18327 1.15497 1.14324 1.23708 0.86248 1.00845 0.86880 1.22055 1.07061 0.91241 1.03994 1.22280 0.92513 1.00246 0.81303 1.49050 1.42857 1.09432 1.09627 1.78974 1.28035 1.01775 1.01277 0.93097 0.93802 0.92818 0.87772 0.97080 0.93882 0.96210 0.95913 0.90878 0.91249 0.90755 0.90303 0.75079 0.78881 0.80417 0.79607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.30 37.16 0.35 -1.73 16 2 C -0.11 -2.13 3.09 -88.47 -0.27 -2.41 16 3 H 0.07 1.29 8.05 -51.93 -0.42 0.87 16 4 C 0.16 3.88 5.36 -2.53 -0.01 3.87 16 5 N -0.61 -15.85 3.39 -170.06 -0.58 -16.42 16 6 C -0.22 -6.25 10.27 -15.06 -0.15 -6.41 16 7 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 8 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 9 N -0.92 -27.35 10.09 55.49 0.56 -26.79 16 10 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 14 C 0.14 2.93 6.25 -3.06 -0.02 2.91 16 15 C -0.09 -1.56 2.38 -88.77 -0.21 -1.78 16 16 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 17 C -0.12 -1.55 4.74 -26.73 -0.13 -1.68 16 18 C 0.12 1.55 5.56 -4.04 -0.02 1.52 16 19 N -0.70 -8.78 5.55 -61.16 -0.34 -9.12 16 20 C 0.61 8.91 7.84 -12.20 -0.10 8.82 16 21 O -0.50 -8.89 17.07 5.35 0.09 -8.80 16 22 C 0.24 3.41 7.92 -156.79 -1.24 2.17 16 23 N -0.50 -6.64 10.89 -12.23 -0.13 -6.77 16 24 C 0.44 4.99 8.99 -323.04 -2.90 2.09 16 25 N -0.45 -3.82 10.48 -13.79 -0.14 -3.96 16 26 C 0.21 0.60 11.27 -17.07 -0.19 0.41 16 27 C -0.22 -0.23 10.06 -39.77 -0.40 -0.63 16 28 C 0.17 0.72 11.32 -16.54 -0.19 0.53 16 29 N -0.33 -3.24 3.91 -13.80 -0.05 -3.29 16 30 N -0.27 -3.57 12.78 32.02 0.41 -3.16 16 31 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.10 2.88 5.87 -51.93 -0.31 2.58 16 35 H 0.01 0.29 8.04 -51.93 -0.42 -0.12 16 36 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 38 H 0.02 0.48 7.70 -51.93 -0.40 0.08 16 39 H 0.07 0.99 7.95 -51.92 -0.41 0.57 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.08 1.15 7.69 -51.93 -0.40 0.75 16 43 H 0.41 4.55 8.14 -40.82 -0.33 4.22 16 44 H 0.19 -0.30 8.06 -52.49 -0.42 -0.73 16 45 H 0.18 -0.59 8.06 -52.49 -0.42 -1.01 16 46 H 0.19 0.17 8.06 -52.49 -0.42 -0.25 16 LS Contribution 385.46 15.07 5.81 5.81 Total: -1.00 -38.11 385.46 -11.44 -49.56 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -6.45 Total: -1.81 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: -5.59 Total: 7.20 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -0.28 Total: -69.52 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -38.11 -11.44 -49.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103554331.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.765 kcal (2) G-P(sol) polarization free energy of solvation -38.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds